CsaV3_6G009620 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G009620
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 7783641 .. 7783952 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTTAAATATCCTAATTACGTCAAAAGCAAGGGGAGGCACACAACTGGCGCTGGGCAGAGCGCAACTGCTCTGTTCAGCACTCTTAGCCACAATCTTACAAAAGCATGGCGTCGTTTTGAGCACCAGAGCGCTGAGGAAGCATGCTCGTGCGCAACTGCGCTCCAACTGTTCTCTAAATGCAATTGTTCCTGATTTTAAGTCAATAAAAGCCCGAAATTTATCCAATCTTCACCTCCATTTTCTGTATTCTTCATCCCCCTCGTCAATCTCCCCCATTCTTCACTTGTATTTTCCTACATTTTATTGA

mRNA sequence

ATGCACTTAAATATCCTAATTACGTCAAAAGCAAGGGGAGGCACACAACTGGCGCTGGGCAGAGCGCAACTGCTCTGTTCAGCACTCTTAGCCACAATCTTACAAAAGCATGGCGTCGTTTTGAGCACCAGAGCGCTGAGGAAGCATGCTCGTGCGCAACTGCGCTCCAACTGTTCTCTAAATGCAATTGTTCCTGATTTTAAGTCAATAAAAGCCCGAAATTTATCCAATCTTCACCTCCATTTTCTGTATTCTTCATCCCCCTCGTCAATCTCCCCCATTCTTCACTTGTATTTTCCTACATTTTATTGA

Coding sequence (CDS)

ATGCACTTAAATATCCTAATTACGTCAAAAGCAAGGGGAGGCACACAACTGGCGCTGGGCAGAGCGCAACTGCTCTGTTCAGCACTCTTAGCCACAATCTTACAAAAGCATGGCGTCGTTTTGAGCACCAGAGCGCTGAGGAAGCATGCTCGTGCGCAACTGCGCTCCAACTGTTCTCTAAATGCAATTGTTCCTGATTTTAAGTCAATAAAAGCCCGAAATTTATCCAATCTTCACCTCCATTTTCTGTATTCTTCATCCCCCTCGTCAATCTCCCCCATTCTTCACTTGTATTTTCCTACATTTTATTGA

Protein sequence

MHLNILITSKARGGTQLALGRAQLLCSALLATILQKHGVVLSTRALRKHARAQLRSNCSLNAIVPDFKSIKARNLSNLHLHFLYSSSPSSISPILHLYFPTFY
Homology
[Close]
BLAST of CsaV3_6G009620 vs. NCBI nr
Match: KGN46607.1 (hypothetical protein Csa_6G112455 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 1.6e-47
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MHLNILITSKARGGTQLALGRAQLLCSALLATILQKHGVVLSTRALRKHARAQLRSNCSL 60
           MHLNILITSKARGGTQLALGRAQLLCSALLATILQKHGVVLSTRALRKHARAQLRSNCSL
Sbjct: 1   MHLNILITSKARGGTQLALGRAQLLCSALLATILQKHGVVLSTRALRKHARAQLRSNCSL 60

Query: 61  NAIVPDFKSIKARNLSNLHLHFLYSSSPSSISPILHLYFPTFY 104
           NAIVPDFKSIKARNLSNLHLHFLYSSSPSSISPILHLYFPTFY
Sbjct: 61  NAIVPDFKSIKARNLSNLHLHFLYSSSPSSISPILHLYFPTFY 103

[Close]
BLAST of CsaV3_6G009620 vs. TrEMBL
Match: tr|A0A0A0KDY6|A0A0A0KDY6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112455 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-47
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MHLNILITSKARGGTQLALGRAQLLCSALLATILQKHGVVLSTRALRKHARAQLRSNCSL 60
           MHLNILITSKARGGTQLALGRAQLLCSALLATILQKHGVVLSTRALRKHARAQLRSNCSL
Sbjct: 1   MHLNILITSKARGGTQLALGRAQLLCSALLATILQKHGVVLSTRALRKHARAQLRSNCSL 60

Query: 61  NAIVPDFKSIKARNLSNLHLHFLYSSSPSSISPILHLYFPTFY 104
           NAIVPDFKSIKARNLSNLHLHFLYSSSPSSISPILHLYFPTFY
Sbjct: 61  NAIVPDFKSIKARNLSNLHLHFLYSSSPSSISPILHLYFPTFY 103

The following BLAST results are available for this feature:
BLAST of CsaV3_6G009620 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46607.11.6e-47100.00hypothetical protein Csa_6G112455 [Cucumis sativus][more]
BLAST of CsaV3_6G009620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G009620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G009620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KDY6|A0A0A0KDY6_CUCSA1.1e-47100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112455 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G009620.1CsaV3_6G009620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G009620Cucumber (Chinese Long) v3cuccucB214
CsaV3_6G009620Silver-seed gourdcarcucB0231
CsaV3_6G009620Silver-seed gourdcarcucB0382
CsaV3_6G009620Silver-seed gourdcarcucB0847
CsaV3_6G009620Cucumber (Gy14) v2cgybcucB298
CsaV3_6G009620Cucumber (Gy14) v2cgybcucB344
CsaV3_6G009620Cucumber (Gy14) v1cgycucB115
CsaV3_6G009620Cucumber (Gy14) v1cgycucB159
CsaV3_6G009620Cucurbita maxima (Rimu)cmacucB0632
CsaV3_6G009620Cucurbita maxima (Rimu)cmacucB0667
CsaV3_6G009620Cucurbita maxima (Rimu)cmacucB0741
CsaV3_6G009620Cucurbita moschata (Rifu)cmocucB0617
CsaV3_6G009620Cucurbita moschata (Rifu)cmocucB0653
CsaV3_6G009620Cucurbita moschata (Rifu)cmocucB0730
CsaV3_6G009620Cucurbita pepo (Zucchini)cpecucB0316
CsaV3_6G009620Cucurbita pepo (Zucchini)cpecucB0361
CsaV3_6G009620Cucurbita pepo (Zucchini)cpecucB0935
CsaV3_6G009620Wild cucumber (PI 183967)cpicucB364
CsaV3_6G009620Wild cucumber (PI 183967)cpicucB411
CsaV3_6G009620Bottle gourd (USVL1VR-Ls)cuclsiB441
CsaV3_6G009620Bottle gourd (USVL1VR-Ls)cuclsiB455
CsaV3_6G009620Melon (DHL92) v3.5.1cucmeB431
CsaV3_6G009620Melon (DHL92) v3.5.1cucmeB469
CsaV3_6G009620Melon (DHL92) v3.6.1cucmedB421
CsaV3_6G009620Melon (DHL92) v3.6.1cucmedB459
CsaV3_6G009620Watermelon (Charleston Gray)cucwcgB464
CsaV3_6G009620Watermelon (Charleston Gray)cucwcgB471
CsaV3_6G009620Watermelon (97103) v1cucwmB541
CsaV3_6G009620Watermelon (97103) v2cucwmbB450
CsaV3_6G009620Watermelon (97103) v2cucwmbB460
CsaV3_6G009620Wax gourdcucwgoB579
CsaV3_6G009620Wax gourdcucwgoB629