CsaV3_6G009490 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G009490
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 7659061 .. 7659305 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTGGTGTGTGGTCCATGATTTTCATTATCTATAATTATTATGATAATCAGAAACGTATGCGACGCTCCTGGACACGTGCTGCACATGCACCTTCATTCTTGCCAATTAATAGTTGTCCGGGGTGGCCGTCCGATCACTCACCGGCCGCCACCGACCCTTTACATCTTCTCACTCCCCGGAATCCTTATCCTACGCTTCATATTCCTCACTTTATTATCCACTCACCACTGTGGTTATAA

mRNA sequence

ATGGATGTGAAACGTATGCGACGCTCCTGGACACGTGCTGCACATGCACCTTCATTCTTGCCAATTAATAGTTGTCCGGGGTGGCCGTCCGATCACTCACCGGCCGCCACCGACCCTTTACATCTTCTCACTCCCCGGAATCCTTATCCTACGCTTCATATTCCTCACTTTATTATCCACTCACCACTGTGGTTATAA

Coding sequence (CDS)

ATGGATGTGAAACGTATGCGACGCTCCTGGACACGTGCTGCACATGCACCTTCATTCTTGCCAATTAATAGTTGTCCGGGGTGGCCGTCCGATCACTCACCGGCCGCCACCGACCCTTTACATCTTCTCACTCCCCGGAATCCTTATCCTACGCTTCATATTCCTCACTTTATTATCCACTCACCACTGTGGTTATAA

Protein sequence

MDVKRMRRSWTRAAHAPSFLPINSCPGWPSDHSPAATDPLHLLTPRNPYPTLHIPHFIIHSPLWL
Homology
[Close]
BLAST of CsaV3_6G009490 vs. NCBI nr
Match: KGN46597.1 (hypothetical protein Csa_6G111380 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 9.3e-33
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MDVKRMRRSWTRAAHAPSFLPINSCPGWPSDHSPAATDPLHLLTPRNPYPTLHIPHFIIH 60
          MDVKRMRRSWTRAAHAPSFLPINSCPGWPSDHSPAATDPLHLLTPRNPYPTLHIPHFIIH
Sbjct: 1  MDVKRMRRSWTRAAHAPSFLPINSCPGWPSDHSPAATDPLHLLTPRNPYPTLHIPHFIIH 60

Query: 61 SPLWL 66
          SPLWL
Sbjct: 61 SPLWL 65

[Close]
BLAST of CsaV3_6G009490 vs. TrEMBL
Match: tr|A0A0A0KDX9|A0A0A0KDX9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G111380 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.1e-33
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MDVKRMRRSWTRAAHAPSFLPINSCPGWPSDHSPAATDPLHLLTPRNPYPTLHIPHFIIH 60
          MDVKRMRRSWTRAAHAPSFLPINSCPGWPSDHSPAATDPLHLLTPRNPYPTLHIPHFIIH
Sbjct: 1  MDVKRMRRSWTRAAHAPSFLPINSCPGWPSDHSPAATDPLHLLTPRNPYPTLHIPHFIIH 60

Query: 61 SPLWL 66
          SPLWL
Sbjct: 61 SPLWL 65

The following BLAST results are available for this feature:
BLAST of CsaV3_6G009490 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46597.19.3e-33100.00hypothetical protein Csa_6G111380 [Cucumis sativus][more]
BLAST of CsaV3_6G009490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G009490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G009490 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KDX9|A0A0A0KDX9_CUCSA6.1e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G111380 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G009490.1CsaV3_6G009490.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G009490CSPI06G09100Wild cucumber (PI 183967)cpicucB364
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G009490Cucumber (Chinese Long) v3cuccucB214
CsaV3_6G009490Silver-seed gourdcarcucB0231
CsaV3_6G009490Silver-seed gourdcarcucB0382
CsaV3_6G009490Silver-seed gourdcarcucB0847
CsaV3_6G009490Cucumber (Gy14) v2cgybcucB298
CsaV3_6G009490Cucumber (Gy14) v2cgybcucB344
CsaV3_6G009490Cucumber (Gy14) v1cgycucB115
CsaV3_6G009490Cucumber (Gy14) v1cgycucB159
CsaV3_6G009490Cucurbita maxima (Rimu)cmacucB0632
CsaV3_6G009490Cucurbita maxima (Rimu)cmacucB0667
CsaV3_6G009490Cucurbita maxima (Rimu)cmacucB0741
CsaV3_6G009490Cucurbita moschata (Rifu)cmocucB0617
CsaV3_6G009490Cucurbita moschata (Rifu)cmocucB0653
CsaV3_6G009490Cucurbita moschata (Rifu)cmocucB0730
CsaV3_6G009490Cucurbita pepo (Zucchini)cpecucB0316
CsaV3_6G009490Cucurbita pepo (Zucchini)cpecucB0361
CsaV3_6G009490Cucurbita pepo (Zucchini)cpecucB0935
CsaV3_6G009490Wild cucumber (PI 183967)cpicucB411
CsaV3_6G009490Bottle gourd (USVL1VR-Ls)cuclsiB441
CsaV3_6G009490Bottle gourd (USVL1VR-Ls)cuclsiB455
CsaV3_6G009490Melon (DHL92) v3.5.1cucmeB431
CsaV3_6G009490Melon (DHL92) v3.5.1cucmeB469
CsaV3_6G009490Melon (DHL92) v3.6.1cucmedB421
CsaV3_6G009490Melon (DHL92) v3.6.1cucmedB459
CsaV3_6G009490Watermelon (Charleston Gray)cucwcgB464
CsaV3_6G009490Watermelon (Charleston Gray)cucwcgB471
CsaV3_6G009490Watermelon (97103) v1cucwmB553
CsaV3_6G009490Watermelon (97103) v1cucwmB541
CsaV3_6G009490Watermelon (97103) v2cucwmbB450
CsaV3_6G009490Watermelon (97103) v2cucwmbB460
CsaV3_6G009490Wax gourdcucwgoB579
CsaV3_6G009490Wax gourdcucwgoB629