CsaV3_6G008880 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G008880
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 7139748 .. 7140341 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTATGTTCAACATTCCCATGAAAGCTCTGGATGATGGAATTTCCCTTATCCTTACAATTGAACCACTGGTGAATATGAAATGCACAACAAAAATGTTCTCCATGATATTACCCTCAACACCCGATCGCTCCTTTACAGCTTCCTTTCAAATGGACCCAAAATTCTTCACTCAATTTACTTGCAATTATTATCACTATGCAATTATTCCCCTCGGTGACTTATACCTTCTCATGTTGGATATGCAACGCCGTGGCTTCTTTGCCCTAACCCTTAATCTTTCTGAACATTTCAATGATCGCCGTGTAGTTGCTGCTCTTGAATTTCATACTTATGGTTAGTTTGATTTGATGTATCATTTCTTGTTGTTTCTTTCTCTTCAAGAATCAATAATAATAAATACTAATCTTGTTTCTTGGATTTTTCTTGCAACTTTGTTATAGGTGACGAGGAGAAACTTTCATTGGCAATGTTGCCTAATTTTATGTCCAAGAATGAGGAGGATGTAGGGGAAATTGATTATACTTACTTTGTCTCGATTGAAATTGAAGATTTCAGAAATTTGGTGAAAGAGTTCAAAAACGAGGATGAAG

mRNA sequence

ATGCTTATGTTCAACATTCCCATGAAAGCTCTGGATGATGGAATTTCCCTTATCCTTACAATTGAACCACTGGTGAATATGAAATGCACAACAAAAATGTTCTCCATGATATTACCCTCAACACCCGATCGCTCCTTTACAGCTTCCTTTCAAATGGACCCAAAATTCTTCACTCAATTTACTTGCAATTATTATCACTATGCAATTATTCCCCTCGGTGACTTATACCTTCTCATGTTGGATATGCAACGCCGTGGCTTCTTTGCCCTAACCCTTAATCTTTCTGAACATTTCAATGATCGCCGTGTAGTTGCTGCTCTTGAATTTCATACTTATGGTGACGAGGAGAAACTTTCATTGGCAATGTTGCCTAATTTTATGTCCAAGAATGAGGAGGATGTAGGGGAAATTGATTATACTTACTTTGTCTCGATTGAAATTGAAGATTTCAGAAATTTGGTGAAAGAGTTCAAAAACGAGGATGAAG

Coding sequence (CDS)

ATGCTTATGTTCAACATTCCCATGAAAGCTCTGGATGATGGAATTTCCCTTATCCTTACAATTGAACCACTGGTGAATATGAAATGCACAACAAAAATGTTCTCCATGATATTACCCTCAACACCCGATCGCTCCTTTACAGCTTCCTTTCAAATGGACCCAAAATTCTTCACTCAATTTACTTGCAATTATTATCACTATGCAATTATTCCCCTCGGTGACTTATACCTTCTCATGTTGGATATGCAACGCCGTGGCTTCTTTGCCCTAACCCTTAATCTTTCTGAACATTTCAATGATCGCCGTGTAGTTGCTGCTCTTGAATTTCATACTTATGGTGACGAGGAGAAACTTTCATTGGCAATGTTGCCTAATTTTATGTCCAAGAATGAGGAGGATGTAGGGGAAATTGATTATACTTACTTTGTCTCGATTGAAATTGAAGATTTCAGAAATTTGGTGAAAGAGTTCAAAAACGAGGATGAAG

Protein sequence

MLMFNIPMKALDDGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHYAIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFMSKNEEDVGEIDYTYFVSIEIEDFRNLVKEFKNEDEX

Homology

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BLAST of CsaV3_6G008880 vs. NCBI nr
Match: KGN46535.1 (hypothetical protein Csa_6G107850 [Cucumis sativus])

HSP 1 Score: 310.5 bits (794), Expect = 3.5e-81
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 8   MKALDDGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHY 67
           MKALDDGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHY
Sbjct: 1   MKALDDGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHY 60

Query: 68  AIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFM 127
           AIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFM
Sbjct: 61  AIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFM 120

Query: 128 SKNEEDVGEIDYTYFVSIEIEDFRNLVKEFKNEDE 163
           SKNEEDVGEIDYTYFVSIEIEDFRNLVKEFKNEDE
Sbjct: 121 SKNEEDVGEIDYTYFVSIEIEDFRNLVKEFKNEDE 155

[Close]

BLAST of CsaV3_6G008880 vs. NCBI nr
Match: XP_022947834.1 (uncharacterized protein LOC111451595 [Cucurbita moschata])

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10
Identity = 49/148 (33.11%), Postives = 76/148 (51.35%), Query Frame = 0


Query: 15  ISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHYAIIPLGD 74
           +S++  +  + ++K T   F++I+P    R   A  ++DP+FF QF+CN  HY    L D
Sbjct: 16  LSMMHRLHDIADIKSTPSSFAIIIPQNFIRCAVA-LKIDPQFFNQFSCNQRHYFTASLTD 75

Query: 75  LYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFMSKNEEDV 134
           L   + DM R G   LTL+         +V   E H   +   +S   +P  +    +DV
Sbjct: 76  LVTNLADMDREGSNLLTLSFVRF--QPHMVLEFEKHVLDEVHHVSTLEIPISIPSYRQDV 135

Query: 135 GEIDYTYFVSIEIEDFRNLVKEFKNEDE 163
           GEIDY+ FVSIE++ F+ L +   N  E
Sbjct: 136 GEIDYSSFVSIELDLFKTLARWLDNAYE 160

[Close]

BLAST of CsaV3_6G008880 vs. NCBI nr
Match: XP_023533108.1 (uncharacterized protein LOC111795095 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 47/148 (31.76%), Postives = 74/148 (50.00%), Query Frame = 0


Query: 15  ISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHYAIIPLGD 74
           +S++  +  + ++K T   F++I+P         +  +DP+FF QF+CN  HY    L D
Sbjct: 16  LSMMHRLHDIADIKSTPSSFAIIIPQN-FICCAVALNIDPQFFNQFSCNQRHYFTTSLTD 75

Query: 75  LYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFMSKNEEDV 134
           L   + DM R G   LTL+         +V   E H   +   +S   +P  +    +DV
Sbjct: 76  LVTNLADMDREGSNLLTLSFVRF--QPHMVLEFEKHVLDEVHNVSTFEIPISIPSYRQDV 135

Query: 135 GEIDYTYFVSIEIEDFRNLVKEFKNEDE 163
           GEIDY+ FVSIE++ F+ L +   N  E
Sbjct: 136 GEIDYSSFVSIELDLFKTLARWLDNAYE 160

[Close]

BLAST of CsaV3_6G008880 vs. NCBI nr
Match: XP_022156121.1 (uncharacterized protein LOC111023086 [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 5.1e-08
Identity = 48/158 (30.38%), Postives = 78/158 (49.37%), Query Frame = 0


Query: 1   MLMFNIPMKALDDGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQF 60
           M++F I    L + + +++      ++ CT  M S+I   T DR FTA+ ++ P FF  +
Sbjct: 35  MILFGINTIPLINAMLVLVQFALKADLNCTPGMVSLISTPTSDR-FTAALRLAPPFFIYY 94

Query: 61  TCNYYHYAIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLS- 120
             N Y    I     Y ++ +M  RG+  + L+  E  N+ R++          EE L+ 
Sbjct: 95  PLNRYFRCTIYADAFYRILFNMLCRGYSRMVLDYDERINEDRILLVFRSLMRDAEEPLTS 154

Query: 121 -LAMLPNFMSKNEEDVGEIDYTYFVSIEIEDFRNLVKE 157
            L +LP+      + V EIDY YF SI+ E F ++V E
Sbjct: 155 GLVVLPH----ENQVVAEIDYRYFFSIDSEKFAHIVTE 187

[Close]

BLAST of CsaV3_6G008880 vs. NCBI nr
Match: XP_022959375.1 (uncharacterized protein LOC111460364 [Cucurbita moschata])

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 47/156 (30.13%), Postives = 79/156 (50.64%), Query Frame = 0


Query: 1   MLMFNIPMKALDDGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQF 60
           ML F++P+ A+++   ++  +    N K    M    +  T    F  SFQM P FFTQ+
Sbjct: 1   MLSFDVPIDAIEEATLILKRMNDSGNFKSFRGMLIFTISQTSPICF-VSFQMMPSFFTQY 60

Query: 61  TCNYYHYAIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEF--HTYGDEEKL 120
            C+ +H A   +  L+  + ++++ GFFA T +L E+    R    L F  H  G     
Sbjct: 61  LCDQHHCANFSVDQLFRTLTNLKQVGFFAFTFSLDEY----RHCVHLTFTSHVRGATMTT 120

Query: 121 SLAMLPNFMSKNEEDVGEIDYTYFVSIEIEDFRNLV 155
              ++P  +  +EE + ++DY+ F SI+ E F+ LV
Sbjct: 121 IPTLIP-VVPIDEELIAKVDYSSFFSIDSEQFKLLV 150

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BLAST of CsaV3_6G008880 vs. TrEMBL
Match: tr|A0A0A0KA10|A0A0A0KA10_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G107850 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 2.3e-81
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 8   MKALDDGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHY 67
           MKALDDGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHY
Sbjct: 1   MKALDDGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHY 60

Query: 68  AIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFM 127
           AIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFM
Sbjct: 61  AIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFM 120

Query: 128 SKNEEDVGEIDYTYFVSIEIEDFRNLVKEFKNEDE 163
           SKNEEDVGEIDYTYFVSIEIEDFRNLVKEFKNEDE
Sbjct: 121 SKNEEDVGEIDYTYFVSIEIEDFRNLVKEFKNEDE 155

[Close]

BLAST of CsaV3_6G008880 vs. TrEMBL
Match: tr|A0A1S4E1P6|A0A1S4E1P6_CUCME (uncharacterized protein LOC103497437 OS=Cucumis melo OX=3656 GN=LOC103497437 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.4e-07
Identity = 50/154 (32.47%), Postives = 74/154 (48.05%), Query Frame = 0


Query: 7   PMKALDDGISLILTIEPLVNMKCTTKMFSM-ILPSTPDRSFTASFQMDPKFFTQFTCNYY 66
           P +   D +S++   +      C   MFS+ I  STP    T +  M P+FFT+F C+  
Sbjct: 8   PFEPFSDIVSIMHRFDYFAYFHCNPNMFSIFIRESTPPSIITLT--MLPQFFTRFFCDQN 67

Query: 67  HYAIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPN 126
           HYA   +   Y  ++  +R G+ +L   L+E     R   ALEFH+          +   
Sbjct: 68  HYAQFSMDGFYSQLVLHKRLGYESLIFGLAEF----RFHMALEFHSSSFVHPSPQLLRTW 127

Query: 127 FMSKNEEDVGEIDYTYFVSIEIEDFRNLVKEFKN 160
             S + E  G+I Y  FVS+E+ DFRN+V  F N
Sbjct: 128 QPSYHYEFPGKIGYGPFVSLELHDFRNVVLIFDN 155

[Close]

BLAST of CsaV3_6G008880 vs. TrEMBL
Match: tr|A0A1S3C8E9|A0A1S3C8E9_CUCME (uncharacterized protein LOC103498005 OS=Cucumis melo OX=3656 GN=LOC103498005 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-05
Identity = 51/140 (36.43%), Postives = 68/140 (48.57%), Query Frame = 0


Query: 26  NMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTC-NYYHYAIIPLGDLYLLMLDMQR 85
           ++KC+ KMFS+I+ S        S Q+ P FFT F C N      IP+   Y +M  M  
Sbjct: 26  DLKCSPKMFSLII-SRHFPLIITSLQILPPFFTNFLCQNQIFQFQIPIKSFYDIMNSMTH 85

Query: 86  RGFFALTLNLSEHFNDRRVVAALEF---HTYGDEEKLSLAMLPNFMSKNEEDVGEIDYTY 145
           R + ++TL+L  H     +  AL+F       D+E L  A         EEDVGEIDY  
Sbjct: 86  RLYSSMTLSL--HPQQPLIQIALQFRNPRVVDDQEALYHAF--PLSPSREEDVGEIDYGI 145

Query: 146 FVSIEIEDFRNLVKEFKNED 162
           F SIE   FR +  E  + D
Sbjct: 146 FFSIESLVFRFIAIELDDFD 160

The following BLAST results are available for this feature:

BLAST of CsaV3_6G008880 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46535.1	3.5e-81	100.00	hypothetical protein Csa_6G107850 [Cucumis sativus]	[more]
XP_022947834.1	1.9e-10	33.11	uncharacterized protein LOC111451595 [Cucurbita moschata]	[more]
XP_023533108.1	1.6e-09	31.76	uncharacterized protein LOC111795095 [Cucurbita pepo subsp. pepo]	[more]
XP_022156121.1	5.1e-08	30.38	uncharacterized protein LOC111023086 [Momordica charantia]	[more]
XP_022959375.1	1.5e-07	30.13	uncharacterized protein LOC111460364 [Cucurbita moschata]	[more]

BLAST of CsaV3_6G008880 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G008880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G008880 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KA10\|A0A0A0KA10_CUCSA	2.3e-81	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G107850 PE=4 SV=1	[more]
tr\|A0A1S4E1P6\|A0A1S4E1P6_CUCME	6.4e-07	32.47	uncharacterized protein LOC103497437 OS=Cucumis melo OX=3656 GN=LOC103497437 PE=...	[more]
tr\|A0A1S3C8E9\|A0A1S3C8E9_CUCME	2.1e-05	36.43	uncharacterized protein LOC103498005 OS=Cucumis melo OX=3656 GN=LOC103498005 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G008880.1	CsaV3_6G008880.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G008880	Cla006698	Watermelon (97103) v1	cucwmB570
CsaV3_6G008880	ClCG06G002720	Watermelon (Charleston Gray)	cucwcgB497
CsaV3_6G008880	Lsi09G016460	Bottle gourd (USVL1VR-Ls)	cuclsiB422
CsaV3_6G008880	Cla97C06G112080	Watermelon (97103) v2	cucwmbB487

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G008880	Silver-seed gourd	carcucB0100
CsaV3_6G008880	Silver-seed gourd	carcucB0938
CsaV3_6G008880	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G008880	Cucumber (Gy14) v1	cgycucB159
CsaV3_6G008880	Cucurbita maxima (Rimu)	cmacucB0451
CsaV3_6G008880	Cucurbita moschata (Rifu)	cmocucB0444
CsaV3_6G008880	Cucurbita moschata (Rifu)	cmocucB1065
CsaV3_6G008880	Cucurbita pepo (Zucchini)	cpecucB0176
CsaV3_6G008880	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G008880	Bottle gourd (USVL1VR-Ls)	cuclsiB424
CsaV3_6G008880	Melon (DHL92) v3.5.1	cucmeB446
CsaV3_6G008880	Melon (DHL92) v3.6.1	cucmedB438
CsaV3_6G008880	Wax gourd	cucwgoB551
CsaV3_6G008880	Wax gourd	cucwgoB562