CsaV3_6G008750 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G008750
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	major pollen allergen Ole e 6-like
Location	chr6 : 7039175 .. 7040144 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAATTTAGCTTTACTAAATCCCTACCTATAAAAAGGGGTTTCTCATCCTTCAAAAACTTCATCCTCTCTCAGAATTTTCATCCTCTCTAAGAATTAATAATCAATAAGACACCAAAGGCCAAAAATTTTCAAGAGGAAAAAGATGGCCAAGAAAATGATGGCAGTCTTTTTGATGTGCATCGTGGTGGTAGCTACTTTGCAATTTGTCATGGCCAATGAGGAGGATGGAGTGACCAAATATGAGGCCAAATTTGATGCCAAATACAAGTCTTGCTATGAAACTTGTGAGAAGGAATGCCTTAGAAATGACACTAACGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTAGCGAAAAGGAAGCTGCTGGTACGTATTACCATCTTTATAATAAGCGTTCTCTGTAATTTTTGCATGAATTATGTTAATTTATGATCATAGAAAAAAAACCATGTATCAAAATTTTTCATTAGACCACCAAAAAAGAACCACATATAACAAAAATATAAACTAAAATTGTGAATCTAAATACTTGTACGCATTTTTTATTCTTAAATTTTTGGATAAAGTATTATTTATTATATTAATTTTGATTGTTGTTTTTTGTTTTTTTACAGATAAATTGCACATCGAATTGCACTGAATGATGGAGAGCAAAAAGAAAAAACACCTCTTGAGAAGGATCAAGTACTAAAATTGTATTGAAATCGAGCTTGTACTTTGATTTTAATATTGAAATTTATAAAATTTTTGGTTTTTGGTGACATTGATATGTGAATCAACCATTGAAACTAATTAACATATATGGGGATCGACACATTCTATAAATCTTATATACAATGAGAAGATACTACAGGGCGCAATTCAAAAAGACAAAATATAATTATAATTATAATTTACTACATAATGATCAACACTAATACCGATTTACATTTTTGTTCAATATATCTTTATTAATCTCAC

mRNA sequence

ATGGCCAAGAAAATGATGGCAGTCTTTTTGATGTGCATCGTGGTGGTAGCTACTTTGCAATTTGTCATGGCCAATGAGGAGGATGGAGTGACCAAATATGAGGCCAAATTTGATGCCAAATACAAGTCTTGCTATGAAACTTGTGAGAAGGAATGCCTTAGAAATGACACTAACGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTAGCGAAAAGGAAGCTGCTGATAAATTGCACATCGAATTGCACTGA

Coding sequence (CDS)

ATGGCCAAGAAAATGATGGCAGTCTTTTTGATGTGCATCGTGGTGGTAGCTACTTTGCAATTTGTCATGGCCAATGAGGAGGATGGAGTGACCAAATATGAGGCCAAATTTGATGCCAAATACAAGTCTTGCTATGAAACTTGTGAGAAGGAATGCCTTAGAAATGACACTAACGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTAGCGAAAAGGAAGCTGCTGATAAATTGCACATCGAATTGCACTGA

Protein sequence

MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGESFCEVKCDEDCSEKEAADKLHIELH

Homology

[Close]

BLAST of CsaV3_6G008750 vs. NCBI nr
Match: KGN46520.1 (hypothetical protein Csa_6G106720 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 4.9e-10
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXXXXEAADKLHIELH 86
          XXXXXXXXXXXXXXEAADKLHIELH
Sbjct: 61 XXXXXXXXXXXXXXEAADKLHIELH 85

[Close]

BLAST of CsaV3_6G008750 vs. NCBI nr
Match: XP_008459802.1 (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYE 35
          MAKKMMAVFLMCIVVVATLQF  AN+ED V  YE
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFATANKEDEVANYE 34

[Close]

BLAST of CsaV3_6G008750 vs. TrEMBL
Match: tr|A0A0A0K9Z9|A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-10
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXXXXEAADKLHIELH 86
          XXXXXXXXXXXXXXEAADKLHIELH
Sbjct: 61 XXXXXXXXXXXXXXEAADKLHIELH 85

[Close]

BLAST of CsaV3_6G008750 vs. TrEMBL
Match: tr|A0A1S3CAJ3|A0A1S3CAJ3_CUCME (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103498825 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.7e-04
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYE 35
          MAKKMMAVFLMCIVVVATLQF  AN+ED V  YE
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFATANKEDEVANYE 34

The following BLAST results are available for this feature:

BLAST of CsaV3_6G008750 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46520.1	4.9e-10	100.00	hypothetical protein Csa_6G106720 [Cucumis sativus]	[more]
XP_008459802.1	4.1e-04	82.35	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]

BLAST of CsaV3_6G008750 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G008750 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G008750 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K9Z9\|A0A0A0K9Z9_CUCSA	3.3e-10	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106720 PE=4 SV=1	[more]
tr\|A0A1S3CAJ3\|A0A1S3CAJ3_CUCME	2.7e-04	82.35	major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103498825 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015333	Pollen_allergen_ole-e-6
IPR036466	Pollen_allergen_ole-e-6_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G008750.1	CsaV3_6G008750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	G3DSA:1.10.287.720		coord: 37..83 e-value: 2.4E-15 score: 57.7
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	SSF111388	Pollen allergen ole e 6	coord: 38..80
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole-e-6	coord: 44..81 e-value: 5.0E-11 score: 42.3
IPR015333	Pollen allergen ole e 6	PANTHER	PTHR35632	FAMILY NOT NAMED	coord: 1..81

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G008750	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G008750	Cucumber (Gy14) v1	cgycucB159
CsaV3_6G008750	Cucurbita maxima (Rimu)	cmacucB1083
CsaV3_6G008750	Cucurbita moschata (Rifu)	cmocucB1065
CsaV3_6G008750	Cucurbita pepo (Zucchini)	cpecucB0176
CsaV3_6G008750	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G008750	Bottle gourd (USVL1VR-Ls)	cuclsiB424
CsaV3_6G008750	Watermelon (Charleston Gray)	cucwcgB497
CsaV3_6G008750	Watermelon (97103) v1	cucwmB570
CsaV3_6G008750	Watermelon (97103) v2	cucwmbB487
CsaV3_6G008750	Wax gourd	cucwgoB551
CsaV3_6G008750	Silver-seed gourd	carcucB0100