CsaV3_6G007660 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G007660
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 6169317 .. 6170000 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACAAGTATAGTATAACTGTGTATGTGTGTATATCTAACCACACGATGCTTTGCAAAATGAACGTGCAAAATTTGGGTGAGCCAAGTTTAGAAGAAATTAAATAGGGCGGAGGTGGAAGAGAAATCAGACGCTGCTGCCCATCTATTCCAGAAATGTTCATAAATATCAATTACCAATGAACAAGAAAAACGTGGTAATTCAAGTCAAGAACAATATGGAGGAACGGCTGACGGAATTAGTACCGGTGAACGAGTTTGGATCATCAAGAAAAACCATCAAACCTTCCATTTACAAAATACCAAAGTTCATGAAAGATATCCAACCGAATGCGGACAAGCCACAGTTGGTTGTCGTTTGGGCCATACCATCATGGGGACGAGGATTTGGTTACAATGGAACAGGAAAAACTGAAAGTGTTTTGGCATCTGGTAAAGGGTGATGTTGCCACTTACGAGTCGATTTTGAGTCAAGTGTCGAACATTTTGGAAGATCTATATGCAGCATAAGATCATCTTGAAGAGTATTGGAGGGAGAATGCTGTCAAGTTCATGGAGATGATGATTATAGATGCGTGTTTCGTGCTGGTTTTCTTCTCGAAAGATAAAATTTACAAGTCGCTAATTACTTTCAAATCAGATATAAAACGAGACATTTTGTTGCTTGAGAATCAGCTGCCTTTCC

mRNA sequence

ATGAACAAGAAAAACGTGGTAATTCAAGTCAAGAACAATATGGAGGAACGGCTGACGGAATTAGTACCGGTGAACGAGTTTGGATCATCAAGAAAAACCATCAAACCTTCCATTTACAAAATACCAAAGTTCATGAAAGATATCCAACCGAATGCGGACAAGCCACAGTTGGTTGTCGTTTGGGCCATACCATCATGGGGACGAGGATTTGGTTACAATGGAACAGGAAAAACTGAAAGTGTTTTGGCATCTGGTAAAGGGTGA

Coding sequence (CDS)

ATGAACAAGAAAAACGTGGTAATTCAAGTCAAGAACAATATGGAGGAACGGCTGACGGAATTAGTACCGGTGAACGAGTTTGGATCATCAAGAAAAACCATCAAACCTTCCATTTACAAAATACCAAAGTTCATGAAAGATATCCAACCGAATGCGGACAAGCCACAGTTGGTTGTCGTTTGGGCCATACCATCATGGGGACGAGGATTTGGTTACAATGGAACAGGAAAAACTGAAAGTGTTTTGGCATCTGGTAAAGGGTGA

Protein sequence

MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVVVWAIPSWGRGFGYNGTGKTESVLASGKG

Homology

[Close]

BLAST of CsaV3_6G007660 vs. NCBI nr
Match: KGN46401.1 (hypothetical protein Csa_6G089770 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 4.7e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVVV 60
          MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVVV
Sbjct: 1  MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVVV 60

Query: 61 WAIPSWGRGFGYNGTGKTESVLAS 85
          WAIPSWGRGFGYNGTGKTESVLAS
Sbjct: 61 WAIPSWGRGFGYNGTGKTESVLAS 84

[Close]

BLAST of CsaV3_6G007660 vs. NCBI nr
Match: KGN46402.1 (hypothetical protein Csa_6G090770 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 8.6e-18
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVV 60
          MNKK+VVIQVKNN+E++LTELV V+EFGSS KTIKPSIYKIPKFMKDIQPNA KPQLV+
Sbjct: 25 MNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKPSIYKIPKFMKDIQPNAYKPQLVL 83

[Close]

BLAST of CsaV3_6G007660 vs. NCBI nr
Match: ADN33691.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 65.9 bits (159), Expect = 8.1e-08
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 1  MNKKNVVIQVKNNMEERLTEL-VPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLV 59
          M+K +VVI VK+ ++E L +  VPVNE  SS KTIKPSIYKIPKFMKDIQ  A +P LV
Sbjct: 25 MDKNDVVINVKDCLKELLMKRPVPVNESPSSEKTIKPSIYKIPKFMKDIQLKAYEPYLV 83

[Close]

BLAST of CsaV3_6G007660 vs. NCBI nr
Match: XP_016902479.1 (PREDICTED: uncharacterized protein LOC103499077 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 8.1e-08
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 1   MNKKNVVIQVKNNMEERLTEL-VPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLV 59
           M+K +VVI VK+ ++E L +  VPVNE  SS KTIKPSIYKIPKFMKDIQ  A +P LV
Sbjct: 501 MDKNDVVINVKDCLKELLMKRPVPVNESPSSEKTIKPSIYKIPKFMKDIQLKAYEPYLV 559

[Close]

BLAST of CsaV3_6G007660 vs. NCBI nr
Match: KGN46400.1 (hypothetical protein Csa_6G089270 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 9.9e-06
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 6  VVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLV 59
          VV++VK+N+++ L + V V + GSS KTIKPSIYKIP F+KD+   A  P +V
Sbjct: 31 VVVEVKDNLKKLLMKSVAVEKLGSSGKTIKPSIYKIPNFIKDVHKEAYMPHMV 83

[Close]

BLAST of CsaV3_6G007660 vs. TrEMBL
Match: tr|A0A0A0KF61|A0A0A0KF61_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G089770 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.1e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVVV 60
          MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVVV
Sbjct: 1  MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVVV 60

Query: 61 WAIPSWGRGFGYNGTGKTESVLAS 85
          WAIPSWGRGFGYNGTGKTESVLAS
Sbjct: 61 WAIPSWGRGFGYNGTGKTESVLAS 84

[Close]

BLAST of CsaV3_6G007660 vs. TrEMBL
Match: tr|A0A0A0KDE1|A0A0A0KDE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G090770 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.7e-18
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVV 60
          MNKK+VVIQVKNN+E++LTELV V+EFGSS KTIKPSIYKIPKFMKDIQPNA KPQLV+
Sbjct: 25 MNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKPSIYKIPKFMKDIQPNAYKPQLVL 83

[Close]

BLAST of CsaV3_6G007660 vs. TrEMBL
Match: tr|A0A1S4E2L7|A0A1S4E2L7_CUCME (uncharacterized protein LOC103499077 OS=Cucumis melo OX=3656 GN=LOC103499077 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.3e-08
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 1   MNKKNVVIQVKNNMEERLTEL-VPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLV 59
           M+K +VVI VK+ ++E L +  VPVNE  SS KTIKPSIYKIPKFMKDIQ  A +P LV
Sbjct: 501 MDKNDVVINVKDCLKELLMKRPVPVNESPSSEKTIKPSIYKIPKFMKDIQLKAYEPYLV 559

[Close]

BLAST of CsaV3_6G007660 vs. TrEMBL
Match: tr|E5GB49|E5GB49_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.3e-08
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 1  MNKKNVVIQVKNNMEERLTEL-VPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLV 59
          M+K +VVI VK+ ++E L +  VPVNE  SS KTIKPSIYKIPKFMKDIQ  A +P LV
Sbjct: 25 MDKNDVVINVKDCLKELLMKRPVPVNESPSSEKTIKPSIYKIPKFMKDIQLKAYEPYLV 83

[Close]

BLAST of CsaV3_6G007660 vs. TrEMBL
Match: tr|A0A0A0K9F5|A0A0A0K9F5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G089270 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.5e-06
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 6  VVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLV 59
          VV++VK+N+++ L + V V + GSS KTIKPSIYKIP F+KD+   A  P +V
Sbjct: 31 VVVEVKDNLKKLLMKSVAVEKLGSSGKTIKPSIYKIPNFIKDVHKEAYMPHMV 83

The following BLAST results are available for this feature:

BLAST of CsaV3_6G007660 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46401.1	4.7e-40	100.00	hypothetical protein Csa_6G089770 [Cucumis sativus]	[more]
KGN46402.1	8.6e-18	84.75	hypothetical protein Csa_6G090770 [Cucumis sativus]	[more]
ADN33691.1	8.1e-08	64.41	hypothetical protein [Cucumis melo subsp. melo]	[more]
XP_016902479.1	8.1e-08	64.41	PREDICTED: uncharacterized protein LOC103499077 [Cucumis melo]	[more]
KGN46400.1	9.9e-06	52.83	hypothetical protein Csa_6G089270 [Cucumis sativus]	[more]

BLAST of CsaV3_6G007660 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G007660 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G007660 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KF61\|A0A0A0KF61_CUCSA	3.1e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G089770 PE=4 SV=1	[more]
tr\|A0A0A0KDE1\|A0A0A0KDE1_CUCSA	5.7e-18	84.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G090770 PE=4 SV=1	[more]
tr\|A0A1S4E2L7\|A0A1S4E2L7_CUCME	5.3e-08	64.41	uncharacterized protein LOC103499077 OS=Cucumis melo OX=3656 GN=LOC103499077 PE=...	[more]
tr\|E5GB49\|E5GB49_CUCME	5.3e-08	64.41	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0K9F5\|A0A0A0K9F5_CUCSA	6.5e-06	52.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G089270 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G007660.1	CsaV3_6G007660.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G007660	CsGy6G007260	Cucumber (Gy14) v2	cgybcucB298

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G007660	Silver-seed gourd	carcucB0012
CsaV3_6G007660	Silver-seed gourd	carcucB1024
CsaV3_6G007660	Cucumber (Gy14) v1	cgycucB532
CsaV3_6G007660	Cucurbita maxima (Rimu)	cmacucB0439
CsaV3_6G007660	Cucurbita maxima (Rimu)	cmacucB1072
CsaV3_6G007660	Cucurbita moschata (Rifu)	cmocucB0433
CsaV3_6G007660	Cucurbita moschata (Rifu)	cmocucB1054
CsaV3_6G007660	Cucurbita pepo (Zucchini)	cpecucB0166
CsaV3_6G007660	Cucurbita pepo (Zucchini)	cpecucB0403
CsaV3_6G007660	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G007660	Bottle gourd (USVL1VR-Ls)	cuclsiB424
CsaV3_6G007660	Melon (DHL92) v3.5.1	cucmeB444
CsaV3_6G007660	Melon (DHL92) v3.6.1	cucmedB435
CsaV3_6G007660	Watermelon (Charleston Gray)	cucwcgB497
CsaV3_6G007660	Watermelon (97103) v1	cucwmB562
CsaV3_6G007660	Watermelon (97103) v2	cucwmbB487
CsaV3_6G007660	Wax gourd	cucwgoB549