CsaV3_6G006440 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G006440
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 5361399 .. 5361708 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATGAATGATCAGCGAGATCATAGGGTGGGAGGTAAGAGACTGATCAGTCCCGGGACCTTATCTTTCGGCAGTGGAGGAAGTCCTTCCGGTTTTAGCTCTCTTGAATATATCATTCTTGAGTAAGGCCTACATAAAGGCTGATTTCTCTTTTTAGTTACGTAGCTGATTTCTCTTTTTAGTTACGTAATCAAAGGAAAACTCGTTTTAACCCATTTGCCTCAGACGATCGAACAAGCGCAACTTCAGCGTAAACAAAACAGCATCAGCAGCCGGAAGAACAAGAGCAACTGCCCCTTCAACTTAG

mRNA sequence

ATGAGAATGAATGATCAGCGAGATCATAGGGTGGGAGGTAAGAGACTGATCAGTCCCGGGACCTTATCTTTCGGCAGTGGAGGAAGTCCTTCCGGTTTTAGCTCTCTTGAATATATCATTCTTGAACGATCGAACAAGCGCAACTTCAGCGTAAACAAAACAGCATCAGCAGCCGGAAGAACAAGAGCAACTGCCCCTTCAACTTAG

Coding sequence (CDS)

ATGAGAATGAATGATCAGCGAGATCATAGGGTGGGAGGTAAGAGACTGATCAGTCCCGGGACCTTATCTTTCGGCAGTGGAGGAAGTCCTTCCGGTTTTAGCTCTCTTGAATATATCATTCTTGAACGATCGAACAAGCGCAACTTCAGCGTAAACAAAACAGCATCAGCAGCCGGAAGAACAAGAGCAACTGCCCCTTCAACTTAG

Protein sequence

MRMNDQRDHRVGGKRLISPGTLSFGSGGSPSGFSSLEYIILERSNKRNFSVNKTASAAGRTRATAPST
Homology
[Close]
BLAST of CsaV3_6G006440 vs. NCBI nr
Match: KGN46269.1 (hypothetical protein Csa_6G078640 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 3.2e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MRMNDQRDHRVGGKRLISPGTLSFGSGGSPSGFSSLEYIILERSNKRNFSVNKTASAAGR 60
          MRMNDQRDHRVGGKRLISPGTLSFGSGGSPSGFSSLEYIILERSNKRNFSVNKTASAAGR
Sbjct: 1  MRMNDQRDHRVGGKRLISPGTLSFGSGGSPSGFSSLEYIILERSNKRNFSVNKTASAAGR 60

Query: 61 TRATAPST 69
          TRATAPST
Sbjct: 61 TRATAPST 68

[Close]
BLAST of CsaV3_6G006440 vs. TrEMBL
Match: tr|A0A0A0KBP0|A0A0A0KBP0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G078640 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MRMNDQRDHRVGGKRLISPGTLSFGSGGSPSGFSSLEYIILERSNKRNFSVNKTASAAGR 60
          MRMNDQRDHRVGGKRLISPGTLSFGSGGSPSGFSSLEYIILERSNKRNFSVNKTASAAGR
Sbjct: 1  MRMNDQRDHRVGGKRLISPGTLSFGSGGSPSGFSSLEYIILERSNKRNFSVNKTASAAGR 60

Query: 61 TRATAPST 69
          TRATAPST
Sbjct: 61 TRATAPST 68

The following BLAST results are available for this feature:
BLAST of CsaV3_6G006440 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46269.13.2e-28100.00hypothetical protein Csa_6G078640 [Cucumis sativus][more]
BLAST of CsaV3_6G006440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G006440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G006440 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KBP0|A0A0A0KBP0_CUCSA2.1e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G078640 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G006440.1CsaV3_6G006440.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G006440CsGy6G006110Cucumber (Gy14) v2cgybcucB298
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G006440Silver-seed gourdcarcucB0263
CsaV3_6G006440Silver-seed gourdcarcucB0654
CsaV3_6G006440Silver-seed gourdcarcucB1129
CsaV3_6G006440Silver-seed gourdcarcucB1004
CsaV3_6G006440Silver-seed gourdcarcucB1128
CsaV3_6G006440Cucumber (Gy14) v2cgybcucB142
CsaV3_6G006440Cucumber (Gy14) v1cgycucB398
CsaV3_6G006440Cucumber (Gy14) v1cgycucB556
CsaV3_6G006440Cucurbita maxima (Rimu)cmacucB0313
CsaV3_6G006440Cucurbita maxima (Rimu)cmacucB0441
CsaV3_6G006440Cucurbita maxima (Rimu)cmacucB0996
CsaV3_6G006440Cucurbita maxima (Rimu)cmacucB1065
CsaV3_6G006440Cucurbita maxima (Rimu)cmacucB1075
CsaV3_6G006440Cucurbita moschata (Rifu)cmocucB0308
CsaV3_6G006440Cucurbita moschata (Rifu)cmocucB0434
CsaV3_6G006440Cucurbita moschata (Rifu)cmocucB0980
CsaV3_6G006440Cucurbita moschata (Rifu)cmocucB1047
CsaV3_6G006440Cucurbita moschata (Rifu)cmocucB1057
CsaV3_6G006440Cucurbita pepo (Zucchini)cpecucB0167
CsaV3_6G006440Cucurbita pepo (Zucchini)cpecucB0396
CsaV3_6G006440Cucurbita pepo (Zucchini)cpecucB0785
CsaV3_6G006440Cucurbita pepo (Zucchini)cpecucB1077
CsaV3_6G006440Wild cucumber (PI 183967)cpicucB178
CsaV3_6G006440Wild cucumber (PI 183967)cpicucB364
CsaV3_6G006440Bottle gourd (USVL1VR-Ls)cuclsiB424
CsaV3_6G006440Bottle gourd (USVL1VR-Ls)cuclsiB491
CsaV3_6G006440Melon (DHL92) v3.5.1cucmeB444
CsaV3_6G006440Melon (DHL92) v3.5.1cucmeB506
CsaV3_6G006440Melon (DHL92) v3.6.1cucmedB435
CsaV3_6G006440Melon (DHL92) v3.6.1cucmedB493
CsaV3_6G006440Watermelon (Charleston Gray)cucwcgB490
CsaV3_6G006440Watermelon (Charleston Gray)cucwcgB497
CsaV3_6G006440Watermelon (97103) v1cucwmB517
CsaV3_6G006440Watermelon (97103) v1cucwmB562
CsaV3_6G006440Watermelon (97103) v2cucwmbB478
CsaV3_6G006440Watermelon (97103) v2cucwmbB487
CsaV3_6G006440Wax gourdcucwgoB561
CsaV3_6G006440Wax gourdcucwgoB572
CsaV3_6G006440Cucumber (Chinese Long) v3cuccucB137