CsaV3_6G005950 (gene) Cucumber (Chinese Long) v3

NameCsaV3_6G005950
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 5055603 .. 5055776 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCTAGAGGATATGGTTGAACGGTCAGATCCAGCAATTGGGCTGGACCCACCCCAACACAAAAGTGACGGACACGGGAAGCTTGGTAGGGTGCATCACATGCGAGTAACCCCTACATTCCCCACGAATGAGATTCTTAGTGGGCTACGTAAAAAGCCCATCCACGTTTGA

mRNA sequence

ATGGGCCTAGAGGATATGGTTGAACGGTCAGATCCAGCAATTGGGCTGGACCCACCCCAACACAAAAGTGACGGACACGGGAAGCTTGGTAGGGTGCATCACATGCGAGTAACCCCTACATTCCCCACGAATGAGATTCTTAGTGGGCTACGTAAAAAGCCCATCCACGTTTGA

Coding sequence (CDS)

ATGGGCCTAGAGGATATGGTTGAACGGTCAGATCCAGCAATTGGGCTGGACCCACCCCAACACAAAAGTGACGGACACGGGAAGCTTGGTAGGGTGCATCACATGCGAGTAACCCCTACATTCCCCACGAATGAGATTCTTAGTGGGCTACGTAAAAAGCCCATCCACGTTTGA

Protein sequence

MGLEDMVERSDPAIGLDPPQHKSDGHGKLGRVHHMRVTPTFPTNEILSGLRKKPIHV
BLAST of CsaV3_6G005950 vs. NCBI nr
Match: KGN46216.1 (hypothetical protein Csa_6G075170 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 4.3e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MGLEDMVERSDPAIGLDPPQHKSDGHGKLGRVHHMRVTPTFPTNEILSGLRKKPIHV 58
          MGLEDMVERSDPAIGLDPPQHKSDGHGKLGRVHHMRVTPTFPTNEILSGLRKKPIHV
Sbjct: 1  MGLEDMVERSDPAIGLDPPQHKSDGHGKLGRVHHMRVTPTFPTNEILSGLRKKPIHV 57

BLAST of CsaV3_6G005950 vs. TrEMBL
Match: tr|A0A0A0KEL7|A0A0A0KEL7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G075170 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.9e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MGLEDMVERSDPAIGLDPPQHKSDGHGKLGRVHHMRVTPTFPTNEILSGLRKKPIHV 58
          MGLEDMVERSDPAIGLDPPQHKSDGHGKLGRVHHMRVTPTFPTNEILSGLRKKPIHV
Sbjct: 1  MGLEDMVERSDPAIGLDPPQHKSDGHGKLGRVHHMRVTPTFPTNEILSGLRKKPIHV 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN46216.14.3e-26100.00hypothetical protein Csa_6G075170 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KEL7|A0A0A0KEL7_CUCSA2.9e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G075170 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G005950.1CsaV3_6G005950.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G005950CSPI06G05630Wild cucumber (PI 183967)cpicucB364
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G005950Cucumber (Chinese Long) v3cuccucB137
CsaV3_6G005950Cucumber (Chinese Long) v3cuccucB152
CsaV3_6G005950Silver-seed gourdcarcucB0262
CsaV3_6G005950Silver-seed gourdcarcucB0263
CsaV3_6G005950Silver-seed gourdcarcucB0654
CsaV3_6G005950Silver-seed gourdcarcucB1129
CsaV3_6G005950Cucumber (Gy14) v2cgybcucB142
CsaV3_6G005950Cucumber (Gy14) v2cgybcucB298
CsaV3_6G005950Cucumber (Gy14) v1cgycucB398
CsaV3_6G005950Cucumber (Gy14) v1cgycucB556
CsaV3_6G005950Cucurbita maxima (Rimu)cmacucB0313
CsaV3_6G005950Cucurbita maxima (Rimu)cmacucB0411
CsaV3_6G005950Cucurbita maxima (Rimu)cmacucB0441
CsaV3_6G005950Cucurbita maxima (Rimu)cmacucB0454
CsaV3_6G005950Cucurbita maxima (Rimu)cmacucB0996
CsaV3_6G005950Cucurbita maxima (Rimu)cmacucB1065
CsaV3_6G005950Cucurbita moschata (Rifu)cmocucB0308
CsaV3_6G005950Cucurbita moschata (Rifu)cmocucB0407
CsaV3_6G005950Cucurbita moschata (Rifu)cmocucB0434
CsaV3_6G005950Cucurbita moschata (Rifu)cmocucB0447
CsaV3_6G005950Cucurbita moschata (Rifu)cmocucB0980
CsaV3_6G005950Cucurbita moschata (Rifu)cmocucB1047
CsaV3_6G005950Cucurbita pepo (Zucchini)cpecucB0167
CsaV3_6G005950Cucurbita pepo (Zucchini)cpecucB0179
CsaV3_6G005950Cucurbita pepo (Zucchini)cpecucB0281
CsaV3_6G005950Cucurbita pepo (Zucchini)cpecucB0405
CsaV3_6G005950Cucurbita pepo (Zucchini)cpecucB0785
CsaV3_6G005950Cucurbita pepo (Zucchini)cpecucB1077
CsaV3_6G005950Wild cucumber (PI 183967)cpicucB178
CsaV3_6G005950Wild cucumber (PI 183967)cpicucB190
CsaV3_6G005950Bottle gourd (USVL1VR-Ls)cuclsiB424
CsaV3_6G005950Bottle gourd (USVL1VR-Ls)cuclsiB490
CsaV3_6G005950Bottle gourd (USVL1VR-Ls)cuclsiB491
CsaV3_6G005950Melon (DHL92) v3.5.1cucmeB444
CsaV3_6G005950Melon (DHL92) v3.5.1cucmeB506
CsaV3_6G005950Melon (DHL92) v3.5.1cucmeB512
CsaV3_6G005950Melon (DHL92) v3.6.1cucmedB435
CsaV3_6G005950Melon (DHL92) v3.6.1cucmedB493
CsaV3_6G005950Melon (DHL92) v3.6.1cucmedB500
CsaV3_6G005950Watermelon (Charleston Gray)cucwcgB490
CsaV3_6G005950Watermelon (Charleston Gray)cucwcgB497
CsaV3_6G005950Watermelon (97103) v1cucwmB517
CsaV3_6G005950Watermelon (97103) v1cucwmB524
CsaV3_6G005950Watermelon (97103) v1cucwmB562
CsaV3_6G005950Watermelon (97103) v2cucwmbB478
CsaV3_6G005950Watermelon (97103) v2cucwmbB484
CsaV3_6G005950Watermelon (97103) v2cucwmbB487
CsaV3_6G005950Wax gourdcucwgoB574
CsaV3_6G005950Wax gourdcucwgoB670