CsaV3_6G005810 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G005810
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 4998575 .. 4998976 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGAGAAAGGTAGAGATGGAAAGAAAAAGAGCCTCGGAGTTTGCAATAAGAAAGTAACACAAAGTTTATCTATTAAACACCTTATTGTTGCTGAATTGAAGAAAGAGAGATCGGGATTTGATTGTATTCGTGGGAAAGTAGAAAGCGTCAGCGATTCGTTGTCTTTCCTTCTTCTCCTCCAAAATGGCGCATGGTTGGTTGTTAGTGACGACGTTAACCCCGCGTTTGCTTTGCCTATCCAAATTGCCTTTCTTCCTATGGACGATGGCGATGCTCATAATTTCCTTAATCCTGATTGTGACCGTTTGATTATCATACAAGAATTTGGTGGCACACCTTCCAATGACCTCCTCATCATCGATGTTTTCTTTAGTCCAAATCCCAACTTTGTTTGGTAG

mRNA sequence

ATGATAGAGAAAGGTAGAGATGGAAAGAAAAAGAGCCTCGGAGTTTGCAATAAGAAAGTAACACAAAGTTTATCTATTAAACACCTTATTGTTGCTGAATTGAAGAAAGAGAGATCGGGATTTGATTGTATTCGTGGGAAAGTAGAAAGCGTCAGCGATTCGTTGTCTTTCCTTCTTCTCCTCCAAAATGGCGCATGGTTGGTTGTTAGTGACGACGTTAACCCCGCGTTTGCTTTGCCTATCCAAATTGCCTTTCTTCCTATGGACGATGGCGATGCTCATAATTTCCTTAATCCTGATTGTGACCGTTTGATTATCATACAAGAATTTGGTGGCACACCTTCCAATGACCTCCTCATCATCGATGTTTTCTTTAGTCCAAATCCCAACTTTGTTTGGTAG

Coding sequence (CDS)

ATGATAGAGAAAGGTAGAGATGGAAAGAAAAAGAGCCTCGGAGTTTGCAATAAGAAAGTAACACAAAGTTTATCTATTAAACACCTTATTGTTGCTGAATTGAAGAAAGAGAGATCGGGATTTGATTGTATTCGTGGGAAAGTAGAAAGCGTCAGCGATTCGTTGTCTTTCCTTCTTCTCCTCCAAAATGGCGCATGGTTGGTTGTTAGTGACGACGTTAACCCCGCGTTTGCTTTGCCTATCCAAATTGCCTTTCTTCCTATGGACGATGGCGATGCTCATAATTTCCTTAATCCTGATTGTGACCGTTTGATTATCATACAAGAATTTGGTGGCACACCTTCCAATGACCTCCTCATCATCGATGTTTTCTTTAGTCCAAATCCCAACTTTGTTTGGTAG

Protein sequence

MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLLLQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLIIDVFFSPNPNFVW
Homology
[Close]
BLAST of CsaV3_6G005810 vs. NCBI nr
Match: KGN46201.1 (hypothetical protein Csa_6G074540 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 6.6e-70
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60
           MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL
Sbjct: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60

Query: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120
           LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI
Sbjct: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120

Query: 121 IDVFFSPNPNFVW 134
           IDVFFSPNPNFVW
Sbjct: 121 IDVFFSPNPNFVW 133

[Close]
BLAST of CsaV3_6G005810 vs. TrEMBL
Match: tr|A0A0A0KEK2|A0A0A0KEK2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G074540 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 4.4e-70
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60
           MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL
Sbjct: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60

Query: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120
           LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI
Sbjct: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120

Query: 121 IDVFFSPNPNFVW 134
           IDVFFSPNPNFVW
Sbjct: 121 IDVFFSPNPNFVW 133

The following BLAST results are available for this feature:
BLAST of CsaV3_6G005810 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46201.16.6e-70100.00hypothetical protein Csa_6G074540 [Cucumis sativus][more]
BLAST of CsaV3_6G005810 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G005810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G005810 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KEK2|A0A0A0KEK2_CUCSA4.4e-70100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G074540 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G005810.1CsaV3_6G005810.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G005810CSPI06G05500Wild cucumber (PI 183967)cpicucB364
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G005810Watermelon (97103) v2cucwmbB478
CsaV3_6G005810Watermelon (97103) v2cucwmbB487
CsaV3_6G005810Wax gourdcucwgoB574
CsaV3_6G005810Wax gourdcucwgoB670
CsaV3_6G005810Cucumber (Chinese Long) v3cuccucB137
CsaV3_6G005810Cucumber (Chinese Long) v3cuccucB152
CsaV3_6G005810Silver-seed gourdcarcucB0262
CsaV3_6G005810Silver-seed gourdcarcucB0654
CsaV3_6G005810Silver-seed gourdcarcucB1129
CsaV3_6G005810Cucumber (Gy14) v2cgybcucB142
CsaV3_6G005810Cucumber (Gy14) v2cgybcucB298
CsaV3_6G005810Cucumber (Gy14) v1cgycucB398
CsaV3_6G005810Cucumber (Gy14) v1cgycucB556
CsaV3_6G005810Cucurbita maxima (Rimu)cmacucB0313
CsaV3_6G005810Cucurbita maxima (Rimu)cmacucB0411
CsaV3_6G005810Cucurbita maxima (Rimu)cmacucB0454
CsaV3_6G005810Cucurbita maxima (Rimu)cmacucB0996
CsaV3_6G005810Cucurbita maxima (Rimu)cmacucB1065
CsaV3_6G005810Cucurbita moschata (Rifu)cmocucB0308
CsaV3_6G005810Cucurbita moschata (Rifu)cmocucB0407
CsaV3_6G005810Cucurbita moschata (Rifu)cmocucB0447
CsaV3_6G005810Cucurbita moschata (Rifu)cmocucB0980
CsaV3_6G005810Cucurbita moschata (Rifu)cmocucB1047
CsaV3_6G005810Cucurbita pepo (Zucchini)cpecucB0179
CsaV3_6G005810Cucurbita pepo (Zucchini)cpecucB0281
CsaV3_6G005810Cucurbita pepo (Zucchini)cpecucB0405
CsaV3_6G005810Cucurbita pepo (Zucchini)cpecucB0785
CsaV3_6G005810Cucurbita pepo (Zucchini)cpecucB1077
CsaV3_6G005810Wild cucumber (PI 183967)cpicucB178
CsaV3_6G005810Wild cucumber (PI 183967)cpicucB190
CsaV3_6G005810Bottle gourd (USVL1VR-Ls)cuclsiB424
CsaV3_6G005810Bottle gourd (USVL1VR-Ls)cuclsiB490
CsaV3_6G005810Bottle gourd (USVL1VR-Ls)cuclsiB491
CsaV3_6G005810Melon (DHL92) v3.5.1cucmeB444
CsaV3_6G005810Melon (DHL92) v3.5.1cucmeB506
CsaV3_6G005810Melon (DHL92) v3.5.1cucmeB512
CsaV3_6G005810Melon (DHL92) v3.6.1cucmedB435
CsaV3_6G005810Melon (DHL92) v3.6.1cucmedB493
CsaV3_6G005810Melon (DHL92) v3.6.1cucmedB500
CsaV3_6G005810Watermelon (Charleston Gray)cucwcgB490
CsaV3_6G005810Watermelon (Charleston Gray)cucwcgB497
CsaV3_6G005810Watermelon (97103) v1cucwmB517
CsaV3_6G005810Watermelon (97103) v1cucwmB524
CsaV3_6G005810Watermelon (97103) v1cucwmB562