CsaV3_6G003760 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G003760
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Ribosomal protein
Location	chr6 : 3127618 .. 3130717 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATAAATAGGAGGCCAAAACCCGGGGATAAAGTTGGGGTTAAATCTGGCAAATTTATATTCTGGGATTTTTGAAAACTAGCCCTTCAATTAAACAATCCCCACAGTGGTGAAGTGAACGCTCGAAACTGACTCTTCTGCTGCCCCGCTCTTCCGCCGATCACTAACTTCTCGAATCGTCCTAGGGCTGTCCCAACTACTGCTCTCCCGGTGTTCAAACACGCCGCAGGTTAAATTACAATCAATTTCCATTCCCTATTTTCCTTTTCCATTTGTCTTGCCTCACAATTTTCTCGGTAACGTAGGAAAATGGTATGATAAACGAAATTTGCTCTCAGGTTTTGTATATTTTCGTGTACTGTAAGATATGGGAAGGAGGATTTTGAACGACGCATTAAGATCTATTGTCAATGCTGAGAGGAGGGGAAACTCTATGGTGGAACTCAAACCCATTTCCACTGTCATGGCTTCTTTTCTTAAAGTCATGAAAGATCATGGTAAGACCTGTGTCTCTCTAGCTTTTTGGGTGATGAACTGACATGGTTTTTCACCTTTTCTTACGCCCTATTTATTTGCTTAGAATTTATGCTCCGGTGTTTTACTTCATGCTGTCAAGTGATAGATTCATATTGGCATTTCCTTCGTGTTGAGATCATTCGTGATTACTTTGTAGATTCGTAGATTTGTTGCTGCTGTGAAATGTGAGTGTTAAACCTCTTTTGTGATGTACAATATGCAGAAAATTGAAACAACCTTGGGCTTTACACTCTAGACTAGATTATAACTTCATCCAGCTCCTTATTAATTAGAATGCATCCTGGCATGATTTTACTTCTATGTTTAACATGACAGAGGTTATAATTGAAATGACCTTGCCTATATCCTTAATTCATTGAAAATTTTCCAGTGTGTATTAGCTTTGACAATATGGTAAATGAGTCCTTCCTGCTTCCACGCTCAATGGATCATATTATTCTAGTTTTACTAGGATCTAACGAAGGGGGAAGGAAGTTTGTTGAATACGTTTAAATTGAAATTTATTTCTTCAATTGAACTAATCATCTCATATTGAATTGACCTTTTGTAGTCATAAAAAAATAGGATTGAATTGCAAGTCACTTGTAGTCCAAAAGTTTGATATCTGCCTATCCTAGGGTGCTATTACCATTGGAAACCATTGTAGTTCTAATGGAACAGGGAGGGGAAAATCCGAATATTAGCAATATTGGAAGTTATATAATGTGAACACATTAGTTTGCTGGTTGGTATGTGTCTTTTCCATCAGAAAGTTTATGAAAATATAAATAGGTATGCCACTTTCTTTTCCAGACTTTGCTTATTTGTTATTTTGATGTCATTGAGTTGTAAAATATCCATCTTCACCATTAATAGTGATGGTTGTAATATTACAACCGTCAAGGTGCTAAGCTGGCCCGGACATTCACGAATATTAAAAAAAAAAAACATTGACTGTTGTAATGCTACTGATATTTTCCTAATAATTAACAGTAAATGTATGATGCTACTGTAAAGGGTTTCATATTGATGATCTACTCTGTACTTTCATCTCATTTTTGGAGTCTTCAAATTTTATGTAAAGGGTATATCAAGGACTATCAAGTTCACAATCCACAAAGAGTCGGAAGGATAACAGTTGAGCTGCAAGGTAGGATCAAGGATTGCAAGGCAATCACCTACAGGCAGGACATCAAGGCAAAGGATATTGAAGCTTACAGTTTACGAACACTTCCAACACGTCAGGTGTTTTAATTATTATATTTTGCTTTCAAATCTGAATGGATTTGTCAGTCAATCTTTATTATATCTAGTTGTCCTCTTTGGTCATTTGTCTACCCATGTTGAATCAACTCAACCAATATGGTCAATATGCATGCCATTAACTTAAGATTATAGTCTGGCAAAGACAAAGTAGGATCATAATTCAAAATTTAGAGACAAATGATTAAGGCGCCATTTGGTGACCAATTTGTTTTTGTTTTTGCTTCTGTTTTTTAAAGTTAAGCCTATAAACATAACTTTCACCCAACCTTCTTCTGTTATTATTTATGTTTTACCAATAGTTTAAAAAACCAAGCCAATTTTTTAAAACAAAAATAAAAGTAGCTTTAAAAAATTGTTTTTATTTTTGGAATTTGGCTAAGAATTCAACGTAGTACTTTGGGAATACGCAAATCATTATAAGAAATGGAGAGGAACTAGACTTCATTTTCAAAAACTAAAAACAAAAAACAAAATAGTTTCCAAGGGCCTAATTTTTACTTTTTGAAGTTGAAAAGCTAAATAAACCTAACCGTCAAAAATTTATGACCACACTCTTGTTGCTAAGAAACTTGGCCAAGTAGGTCTTGTTTATTTAACCAAATTTCTCACTCTCCAACCTCTCCGCTTTGTCTGCTGTGGGGCAATGTTATGTTTTCTAATTAGCCTATTCCAAGGATAAATACTTGGAACTTGTTATTTTGTTTATATTAACCAAATATTTTACTTTCGTCTCTACAGTGGGGTTATGTTGTGATTACTACTCCAGAAGGCATCTTGGATCATGAAGAGGCAATGAAAAGGAATGTTGGGGGTCAGGTTCTTGGATTCTTTCATTAGAGAGCCTCCTAGTTTGGCTGTTCCTTGATTTGTGAGTTTTTTTTTTTCTTTTTCAAATGTTTCCCATGTTGCATTGGGATCTTCTTATGGCTTAGTTTTCTTATTTGTGGCCTTTTGATTTTGTATTATCAAGGCAGTGCTGTACACCTCTCTTTGAGTGTTGTTGCTCCCATCATGAATGTAAGCATAATGTCAGTTTTGAACTTTCAGAAAATGAAAAGAAAAACTTTATACAATATCTTGCAGTCCTGATGGATGTGAATGAGAGTTGAAAATGAGGATACTGCTTTCATTAGTAACGAGTCCAATATAACCTATATGGGGCCTTTGCCAATGACTAACATTGGATTAGGGAAGAAAAAAGAGGCAGATATTTCTCAGCTGAAAAGTGGTAATAATATGATTAACATTTAGCAATACCTGTGCTTTTTTGTTAGAACTAAAGCAAACTGCGGATTTATTGCAAGATTATGTTGGTCGAAG

mRNA sequence

ATGGGAAGGAGGATTTTGAACGACGCATTAAGATCTATTGTCAATGCTGAGAGGAGGGGAAACTCTATGGTGGAACTCAAACCCATTTCCACTGTCATGGCTTCTTTTCTTAAAGTCATGAAAGATCATGGGTATATCAAGGACTATCAAGTTCACAATCCACAAAGAGTCGGAAGGATAACAGTTGAGCTGCAAGGTAGGATCAAGGATTGCAAGGCAATCACCTACAGGCAGGACATCAAGGCAAAGGATATTGAAGCTTACAGTTTACGAACACTTCCAACACGTCAGTGGGGTTATGTTGTGATTACTACTCCAGAAGGCATCTTGGATCATGAAGAGGCAATGAAAAGGAATGTTGGGGGTCAGGTTCTTGGATTCTTTCATTAG

Coding sequence (CDS)

ATGGGAAGGAGGATTTTGAACGACGCATTAAGATCTATTGTCAATGCTGAGAGGAGGGGAAACTCTATGGTGGAACTCAAACCCATTTCCACTGTCATGGCTTCTTTTCTTAAAGTCATGAAAGATCATGGGTATATCAAGGACTATCAAGTTCACAATCCACAAAGAGTCGGAAGGATAACAGTTGAGCTGCAAGGTAGGATCAAGGATTGCAAGGCAATCACCTACAGGCAGGACATCAAGGCAAAGGATATTGAAGCTTACAGTTTACGAACACTTCCAACACGTCAGTGGGGTTATGTTGTGATTACTACTCCAGAAGGCATCTTGGATCATGAAGAGGCAATGAAAAGGAATGTTGGGGGTCAGGTTCTTGGATTCTTTCATTAG

Protein sequence

MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRITVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGGQVLGFFH

Homology

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BLAST of CsaV3_6G003760 vs. NCBI nr
Match: XP_004140873.1 (PREDICTED: 40S ribosomal protein S15a-2-like [Cucumis sativus] >KGN45986.1 hypothetical protein Csa_6G041710 [Cucumis sativus])

HSP 1 Score: 265.4 bits (677), Expect = 1.0e-67
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI
Sbjct: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV
Sbjct: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLGFFH
Sbjct: 121 GGQVLGFFH 129

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BLAST of CsaV3_6G003760 vs. NCBI nr
Match: XP_008445702.1 (PREDICTED: 40S ribosomal protein S15a-2-like [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 1.1e-64
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALR+IVNAERRG SMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI
Sbjct: 1   MGRRILNDALRAIVNAERRGKSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGRIKDCKA+TYRQDIKAKDIEAY LRTLPT QWGYVVITTPEGILDHEEAMKRNV
Sbjct: 61  TVDLQGRIKDCKALTYRQDIKAKDIEAYRLRTLPTLQWGYVVITTPEGILDHEEAMKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLGFFH
Sbjct: 121 GGQVLGFFH 129

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BLAST of CsaV3_6G003760 vs. NCBI nr
Match: XP_022150338.1 (40S ribosomal protein S15a-5-like isoform X2 [Momordica charantia])

HSP 1 Score: 247.7 bits (631), Expect = 2.2e-62
Identity = 119/129 (92.25%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALRSIVNAERRG SMVELKPISTVM+SFLKVMKDHGYIKDYQV++P RVGRI
Sbjct: 1   MGRRILNDALRSIVNAERRGKSMVELKPISTVMSSFLKVMKDHGYIKDYQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRIKDCKAIT+RQDIKAKDIEAY LRTLPT QWGYVVITTPEGILDHEEAM+RNV
Sbjct: 61  TVELQGRIKDCKAITHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMRRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGYFH 129

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BLAST of CsaV3_6G003760 vs. NCBI nr
Match: XP_022959550.1 (40S ribosomal protein S15a-2-like [Cucurbita moschata] >XP_022959551.1 40S ribosomal protein S15a-2-like [Cucurbita moschata])

HSP 1 Score: 241.5 bits (615), Expect = 1.6e-60
Identity = 113/129 (87.60%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALR+IVNAERRG + VELKPIS+VM++FLKVMKDHGYI D+QVH+PQRVGRI
Sbjct: 1   MGRRILNDALRAIVNAERRGKATVELKPISSVMSAFLKVMKDHGYINDFQVHDPQRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRIKDCKA+TYRQDIKAK+IEAY +RTLPTRQWGYVVITTPEGILDHEEA+KRNV
Sbjct: 61  TVELQGRIKDCKALTYRQDIKAKEIEAYRIRTLPTRQWGYVVITTPEGILDHEEAIKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGYFH 129

[Close]

BLAST of CsaV3_6G003760 vs. NCBI nr
Match: XP_023005097.1 (40S ribosomal protein S15a-5-like [Cucurbita maxima] >XP_023005098.1 40S ribosomal protein S15a-5-like [Cucurbita maxima])

HSP 1 Score: 240.7 bits (613), Expect = 2.7e-60
Identity = 112/129 (86.82%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALR+IVNAERRG + VELKPISTVM+SFLKVMKDHGYI D+QVH+PQRVGRI
Sbjct: 1   MGRRILNDALRAIVNAERRGKATVELKPISTVMSSFLKVMKDHGYINDFQVHDPQRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRIKDCKA+T+RQDIKAK++EAY +RTLPTRQWGYVVITTPEGI+DHEEA+KRNV
Sbjct: 61  TVELQGRIKDCKALTHRQDIKAKELEAYRIRTLPTRQWGYVVITTPEGIMDHEEAIKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGYFH 129

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BLAST of CsaV3_6G003760 vs. TAIR10
Match: AT2G19720.1 (ribosomal protein S15A B)

HSP 1 Score: 223.4 bits (568), Expect = 8.1e-59
Identity = 101/129 (78.29%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALR+IVNAE+RG + VELKP+STVM+SFLK+MK+ GYIK++QVH+P RVGRI
Sbjct: 1   MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGR+ DCKA+TYRQD+KA +I  Y+ RTLPTRQWGY+VITTP+GILDHEEA+KRNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLGFFH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of CsaV3_6G003760 vs. TAIR10
Match: AT4G29430.1 (ribosomal protein S15A E)

HSP 1 Score: 223.0 bits (567), Expect = 1.1e-58
Identity = 102/129 (79.07%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALR+IVNAERRG + VELKPISTVM+SFL++MK+ GYIK++QV++P RVGRI
Sbjct: 1   MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGR+ DCKA+TYRQD++AK+IE Y+ RTLPTRQWGYVVITTP+GILDHEEA+KRNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLGFF+
Sbjct: 121 GGQVLGFFY 129

[Close]

BLAST of CsaV3_6G003760 vs. TAIR10
Match: AT1G07770.1 (ribosomal protein S15A)

HSP 1 Score: 142.9 bits (359), Expect = 1.4e-34
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 5   ILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRITVEL 64
           +LNDAL+S+ NAE+RG   V ++P S V+  FL VM+ HGYI +++  +  R G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+  C  I+ R D+  K+IE ++ R LP+RQ+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGFFH 130
           LGFF+
Sbjct: 126 LGFFY 130

[Close]

BLAST of CsaV3_6G003760 vs. TAIR10
Match: AT5G59850.1 (Ribosomal protein S8 family protein)

HSP 1 Score: 142.9 bits (359), Expect = 1.4e-34
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 5   ILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRITVEL 64
           +LNDAL+S+ NAE+RG   V ++P S V+  FL VM+ HGYI +++  +  R G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+  C  I+ R D+  K+IE ++ R LP+RQ+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGFFH 130
           LGFF+
Sbjct: 126 LGFFY 130

[Close]

BLAST of CsaV3_6G003760 vs. TAIR10
Match: AT2G39590.1 (Ribosomal protein S8 family protein)

HSP 1 Score: 141.7 bits (356), Expect = 3.1e-34
Identity = 62/125 (49.60%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 5   ILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRITVEL 64
           +LND L+S+ NAE++G   V ++P S V+  FL VM+ HGYI +++  +  R G+I VEL
Sbjct: 12  VLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVEL 71

Query: 65  QGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+ +C  I+ R D+  K+IE ++ + LP+RQ+GY+V+TT  GI+DHEEA K+NVGG+V
Sbjct: 72  NGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKV 131

Query: 125 LGFFH 130
           LGFF+
Sbjct: 132 LGFFY 136

[Close]

BLAST of CsaV3_6G003760 vs. Swiss-Prot
Match: sp|O82205|R15A2_ARATH (40S ribosomal protein S15a-2 OS=Arabidopsis thaliana OX=3702 GN=RPS15AB PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.5e-57
Identity = 101/129 (78.29%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALR+IVNAE+RG + VELKP+STVM+SFLK+MK+ GYIK++QVH+P RVGRI
Sbjct: 1   MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGR+ DCKA+TYRQD+KA +I  Y+ RTLPTRQWGY+VITTP+GILDHEEA+KRNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLGFFH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of CsaV3_6G003760 vs. Swiss-Prot
Match: sp|Q9M0E0|R15A5_ARATH (40S ribosomal protein S15a-5 OS=Arabidopsis thaliana OX=3702 GN=RPS15AE PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.9e-57
Identity = 102/129 (79.07%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALR+IVNAERRG + VELKPISTVM+SFL++MK+ GYIK++QV++P RVGRI
Sbjct: 1   MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGR+ DCKA+TYRQD++AK+IE Y+ RTLPTRQWGYVVITTP+GILDHEEA+KRNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLGFF+
Sbjct: 121 GGQVLGFFY 129

[Close]

BLAST of CsaV3_6G003760 vs. Swiss-Prot
Match: sp|Q9AT34|RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota OX=4039 GN=RPS15A PE=2 SV=3)

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-33
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 5   ILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRITVEL 64
           +LNDAL+S+ NAE+RG   V ++P S V+  FL VM+ HGYI +++  +  R G+I VEL
Sbjct: 6   VLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+  C  I+ R D+  K+IE ++ R LP+RQ+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGFFH 130
           LGFF+
Sbjct: 126 LGFFY 130

[Close]

BLAST of CsaV3_6G003760 vs. Swiss-Prot
Match: sp|P42798|R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 142.9 bits (359), Expect = 2.5e-33
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 5   ILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRITVEL 64
           +LNDAL+S+ NAE+RG   V ++P S V+  FL VM+ HGYI +++  +  R G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+  C  I+ R D+  K+IE ++ R LP+RQ+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGFFH 130
           LGFF+
Sbjct: 126 LGFFY 130

[Close]

BLAST of CsaV3_6G003760 vs. Swiss-Prot
Match: sp|Q00332|RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus OX=3708 GN=RPS15A PE=2 SV=3)

HSP 1 Score: 142.9 bits (359), Expect = 2.5e-33
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 5   ILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRITVEL 64
           +LNDAL+S+ NAE+RG   V ++P S V+  FL VM+ HGYI +++  +  R G+I VEL
Sbjct: 6   VLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+  C  I+ R D+  K+IE ++ R LP+RQ+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGFFH 130
           LGFF+
Sbjct: 126 LGFFY 130

[Close]

BLAST of CsaV3_6G003760 vs. TrEMBL
Match: tr|A0A0A0KDZ7|A0A0A0KDZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G041710 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 6.8e-68
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI
Sbjct: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV
Sbjct: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLGFFH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of CsaV3_6G003760 vs. TrEMBL
Match: tr|A0A1S3BDC0|A0A1S3BDC0_CUCME (40S ribosomal protein S15a-2-like OS=Cucumis melo OX=3656 GN=LOC103488655 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 7.0e-65
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALR+IVNAERRG SMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI
Sbjct: 1   MGRRILNDALRAIVNAERRGKSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGRIKDCKA+TYRQDIKAKDIEAY LRTLPT QWGYVVITTPEGILDHEEAMKRNV
Sbjct: 61  TVDLQGRIKDCKALTYRQDIKAKDIEAYRLRTLPTLQWGYVVITTPEGILDHEEAMKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLGFFH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of CsaV3_6G003760 vs. TrEMBL
Match: tr|A0A0L9VSX5|A0A0L9VSX5_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan11g090200 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.4e-57
Identity = 104/129 (80.62%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALRS+VNAERRG +MVELKPISTVM+SFL++MK+HGYIKD+QV++P RVGRI
Sbjct: 1   MGRRILNDALRSMVNAERRGKAMVELKPISTVMSSFLRIMKNHGYIKDFQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRI DCKA+TYR+D+KA+D+EAY L+TLPT QWGYVVITTP+G+LDHEEA+K+NV
Sbjct: 61  TVELQGRINDCKALTYRKDMKARDLEAYRLQTLPTHQWGYVVITTPDGVLDHEEAIKKNV 120

Query: 121 GGQVLGFFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGYFH 129

[Close]

BLAST of CsaV3_6G003760 vs. TrEMBL
Match: tr|A0A0S3QX35|A0A0S3QX35_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G035200 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.4e-57
Identity = 104/129 (80.62%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALRS+VNAERRG +MVELKPISTVM+SFL++MK+HGYIKD+QV++P RVGRI
Sbjct: 1   MGRRILNDALRSMVNAERRGKAMVELKPISTVMSSFLRIMKNHGYIKDFQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRI DCKA+TYR+D+KA+D+EAY L+TLPT QWGYVVITTP+G+LDHEEA+K+NV
Sbjct: 61  TVELQGRINDCKALTYRKDMKARDLEAYRLQTLPTHQWGYVVITTPDGVLDHEEAIKKNV 120

Query: 121 GGQVLGFFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGYFH 129

[Close]

BLAST of CsaV3_6G003760 vs. TrEMBL
Match: tr|A0A2P5A6V4|A0A2P5A6V4_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_362790 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.4e-57
Identity = 105/129 (81.40%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILN+ALRSIVNAERRG SMVELKPISTVM+SFL +MKD GYIKD+QV++P RVGRI
Sbjct: 1   MGRRILNEALRSIVNAERRGKSMVELKPISTVMSSFLNIMKDRGYIKDFQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGRI DC+A+T+RQDIKA+DIE Y +RTLPTRQWGYVVITTP+G+LDHEEA++RNV
Sbjct: 61  TVQLQGRINDCRALTFRQDIKARDIEEYKIRTLPTRQWGYVVITTPDGVLDHEEALRRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGYFH 129

The following BLAST results are available for this feature:

BLAST of CsaV3_6G003760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140873.1	1.0e-67	100.00	PREDICTED: 40S ribosomal protein S15a-2-like [Cucumis sativus] >KGN45986.1 hypot...	[more]
XP_008445702.1	1.1e-64	95.35	PREDICTED: 40S ribosomal protein S15a-2-like [Cucumis melo]	[more]
XP_022150338.1	2.2e-62	92.25	40S ribosomal protein S15a-5-like isoform X2 [Momordica charantia]	[more]
XP_022959550.1	1.6e-60	87.60	40S ribosomal protein S15a-2-like [Cucurbita moschata] >XP_022959551.1 40S ribos...	[more]
XP_023005097.1	2.7e-60	86.82	40S ribosomal protein S15a-5-like [Cucurbita maxima] >XP_023005098.1 40S ribosom...	[more]

BLAST of CsaV3_6G003760 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G19720.1	8.1e-59	78.29	ribosomal protein S15A B	[more]
AT4G29430.1	1.1e-58	79.07	ribosomal protein S15A E	[more]
AT1G07770.1	1.4e-34	51.20	ribosomal protein S15A	[more]
AT5G59850.1	1.4e-34	51.20	Ribosomal protein S8 family protein	[more]
AT2G39590.1	3.1e-34	49.60	Ribosomal protein S8 family protein	[more]

BLAST of CsaV3_6G003760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82205\|R15A2_ARATH	1.5e-57	78.29	40S ribosomal protein S15a-2 OS=Arabidopsis thaliana OX=3702 GN=RPS15AB PE=2 SV=...	[more]
sp\|Q9M0E0\|R15A5_ARATH	1.9e-57	79.07	40S ribosomal protein S15a-5 OS=Arabidopsis thaliana OX=3702 GN=RPS15AE PE=2 SV=...	[more]
sp\|Q9AT34\|RS15A_DAUCA	1.9e-33	51.20	40S ribosomal protein S15a OS=Daucus carota OX=4039 GN=RPS15A PE=2 SV=3	[more]
sp\|P42798\|R15A1_ARATH	2.5e-33	51.20	40S ribosomal protein S15a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15AA PE=2 SV=...	[more]
sp\|Q00332\|RS15A_BRANA	2.5e-33	51.20	40S ribosomal protein S15a OS=Brassica napus OX=3708 GN=RPS15A PE=2 SV=3	[more]

BLAST of CsaV3_6G003760 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KDZ7\|A0A0A0KDZ7_CUCSA	6.8e-68	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G041710 PE=4 SV=1	[more]
tr\|A0A1S3BDC0\|A0A1S3BDC0_CUCME	7.0e-65	95.35	40S ribosomal protein S15a-2-like OS=Cucumis melo OX=3656 GN=LOC103488655 PE=4 S...	[more]
tr\|A0A0L9VSX5\|A0A0L9VSX5_PHAAN	2.4e-57	80.62	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan11g090200 PE...	[more]
tr\|A0A0S3QX35\|A0A0S3QX35_PHAAN	2.4e-57	80.62	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G...	[more]
tr\|A0A2P5A6V4\|A0A2P5A6V4_PARAD	2.4e-57	81.40	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_362790 PE=3 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR035987	Ribosomal_S8_sf
IPR000630	Ribosomal_S8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005773	vacuole
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G003760.1	CsaV3_6G003760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.1490.10		coord: 69..129 e-value: 3.6E-29 score: 102.4
None	No IPR available	GENE3D	G3DSA:3.30.1370.30		coord: 2..68 e-value: 2.6E-23 score: 83.5
None	No IPR available	PANTHER	PTHR11758:SF11	40S RIBOSOMAL PROTEIN S15A-2-RELATED	coord: 1..129
IPR000630	Ribosomal protein S8	PFAM	PF00410	Ribosomal_S8	coord: 6..127 e-value: 1.2E-21 score: 76.9
IPR000630	Ribosomal protein S8	PANTHER	PTHR11758	40S RIBOSOMAL PROTEIN S15A	coord: 1..129
IPR035987	Ribosomal protein S8 superfamily	SUPERFAMILY	SSF56047	Ribosomal protein S8	coord: 3..128

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G003760	CSPI06G03470	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G003760	Cucsa.365110	Cucumber (Gy14) v1	cgycucB556
CsaV3_6G003760	CmaCh08G000790	Cucurbita maxima (Rimu)	cmacucB1080
CsaV3_6G003760	CmoCh08G000820	Cucurbita moschata (Rifu)	cmocucB1061
CsaV3_6G003760	Cp4.1LG17g09900	Cucurbita pepo (Zucchini)	cpecucB0412
CsaV3_6G003760	CsGy6G003460	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G003760	Carg04908	Silver-seed gourd	carcucB0099
CsaV3_6G003760	Cla007215	Watermelon (97103) v1	cucwmB499
CsaV3_6G003760	MELO3C011626	Melon (DHL92) v3.5.1	cucmeB486
CsaV3_6G003760	ClCG08G004310	Watermelon (Charleston Gray)	cucwcgB520
CsaV3_6G003760	Lsi08G003530	Bottle gourd (USVL1VR-Ls)	cuclsiB503
CsaV3_6G003760	MELO3C011626.2	Melon (DHL92) v3.6.1	cucmedB473
CsaV3_6G003760	Cla97C08G147540	Watermelon (97103) v2	cucwmbB511
CsaV3_6G003760	Bhi04G001640	Wax gourd	cucwgoB608

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G003760	Silver-seed gourd	carcucB0252
CsaV3_6G003760	Cucurbita maxima (Rimu)	cmacucB0443
CsaV3_6G003760	Cucurbita moschata (Rifu)	cmocucB0438
CsaV3_6G003760	Cucurbita pepo (Zucchini)	cpecucB0170
CsaV3_6G003760	Watermelon (97103) v2	cucwmbB524