CsaV3_6G001240 (gene) Cucumber (Chinese Long) v3

NameCsaV3_6G001240
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 827168 .. 828516 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTACACGTACGTCCACACGTGCGGTGTGACATTGGGGTTAAACCATAGGCATCGCAATTCTTCCAAACGAGCGCTGAATCCCGCCGCTTATGGCCAACAGCAGCCGCTACGATCCGACCCGCACCCGATATTTCGTCTCACAATCGCCCCGATTTTTCCCCATTTCCCCTTCTGGGTTCGTGCTTTTCAATCTTTTTCTCCGCTCAGAACTCCATCTTTTCAATCTACATTTCTGGGTGGTTGCAAGTTTTTTTTTTTTTTTTTTTTTTTTGTATTATATAAAGTAGTAAGATTATCGAAATGAATGGAGTGGAGTATAGAGCTTTGAAGTTTGGTAAAGGGAAAATTCTCTCAATTTATTTCTTCAACTTGTTTCTTTTCTTGCTCTTGCATCGTTCTTTGTACTACTATCTTGCTTTTGCTTCTGTTATTTGATGCAGCTTCTTTTGCATTTATTTTTATCAAATTACTGTTTCTTTCCCTTCTTTTGATGTTAGGGTTCGATTTTATGAATTATGCTCTCGTTTATATATATCAAATTTCCCTCCTTTTGTTTTTCTGATGTACACCTTCTGGTTCTGGCACATTGGTTTTCTTTTTCTTTTTTCGTTCTTTTGTTTTTCGTTTTTTTTTTCAAAGAACAAGAATTAATTAGGAAAAGTATTTGATTTCTTTCCCTTCTTTCTTGATTTAAGGATCGTTTATGTAGACTCATTTGGTTTTCTTTCTGTTGGAGACTGATCTTTTTTCACAATTTCAACCGTAGGTAAGACAAAGAAGAAACTCATAGGTGGAAGTAATTCTTGGATCTCAATTTTCAAAAGTAAAGAACCAAAAACTCTAAGGTACGTTTAAGAACCATTTTGTTTTTGGTTTTGTTCTTTTGAAAATTATGTTCGTTTCCATACAGTTTTTTGGTATATGTTTCCCACCTTCCTTGGACACACATTTGAATTTTAAGCAAAATTTCAATTACAAAGTCTTTAAGTTTTCAAATTTTACTTATTATTTGTCTTTAAAATTTGACTGGGTTTTTTATTACATGATTTTAAAAGTAGGTAATAAATCAAGAAAACTAGAGGCAGAGAAGTAATGATGATAAGCTTTGGTTATCAAATAAAGCTTAAGGTTTTGGGTGTCCGTTTTGAGGTTAATATTTAAACAGTTTAGAGTATCAAACACCGAACTTTGTATGTGTATGGTTTGGACTGCTTTCCTTGATTGTGTTTGATCTGATAAACTTGAAATGGTTCAAAACAAATGGAGTCTTGCATTCTTGCTTGAAACGTTGCCTAGTTCTGATAAATTTATGTTTATTTATTTGATCCAGTATATTCACACCTGGTGA

mRNA sequence

TACACGTACGTCCACACGTGCGGTGTGACATTGGGGTTAAACCATAGGCATCGCAATTCTTCCAAACGAGCGCTGAATCCCGCCGCTTATGGCCAACAGCAGCCGCTACGATCCGACCCGCACCCGATATTTCGTCTCACAATCGCCCCGATTTTTCCCCATTTCCCCTTCTGGTATATTCACACCTGGTG

Coding sequence (CDS)

TACACGTACGTCCACACGTGCGGTGTGACATTGGGGTTAAACCATAGGCATCGCAATTCTTCCAAACGAGCGCTGAATCCCGCCGCTTATGGCCAACAGCAGCCGCTACGATCCGACCCGCACCCGATATTTCGTCTCACAATCGCCCCGATTTTTCCCCATTTCCCCTTCTGGTATATTCACACCTGGTG

Protein sequence

YTYVHTCGVTLGLNHRHRNSSKRALNPAAYGQQQPLRSDPHPIFRLTIAPIFPHFPFWYIHTWX
BLAST of CsaV3_6G001240 vs. NCBI nr
Match: KGN45730.1 (hypothetical protein Csa_6G008610 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 3.3e-27
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  YTYVHTCGVTLGLNHRHRNSSKRALNPAAYGQQQPLRSDPHPIFRLTIAPIFPHFPFW 59
          YTYVHTCGVTLGLNHRHRNSSKRALNPAAYGQQQPLRSDPHPIFRLTIAPIFPHFPFW
Sbjct: 15 YTYVHTCGVTLGLNHRHRNSSKRALNPAAYGQQQPLRSDPHPIFRLTIAPIFPHFPFW 72

BLAST of CsaV3_6G001240 vs. TrEMBL
Match: tr|A0A0A0K7L2|A0A0A0K7L2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008610 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.2e-27
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  YTYVHTCGVTLGLNHRHRNSSKRALNPAAYGQQQPLRSDPHPIFRLTIAPIFPHFPFW 59
          YTYVHTCGVTLGLNHRHRNSSKRALNPAAYGQQQPLRSDPHPIFRLTIAPIFPHFPFW
Sbjct: 15 YTYVHTCGVTLGLNHRHRNSSKRALNPAAYGQQQPLRSDPHPIFRLTIAPIFPHFPFW 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN45730.13.3e-27100.00hypothetical protein Csa_6G008610 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0K7L2|A0A0A0K7L2_CUCSA2.2e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008610 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G001240.1CsaV3_6G001240.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G001240CsGy6G001170Cucumber (Gy14) v2cgybcucB298
The following gene(s) are paralogous to this gene:

None