CsaV3_6G000940 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G000940
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 632526 .. 633130 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAGAAGTAACTTATTGGTTAACGACATTCTTCTATTTATATAAAAAAAAAGTTATGATTTCGCTAAATTAGATAAATACACTTAGTTGAACTATAGCTGAATTGTAATTCCTCTAGATTTGATTCACAAATTCAACAATGTTACAATTAAAAATCTAAATTTGTAATTAATTTTATAATGTACTAAGAACACAATATTATTTTCAGAAAACCCCCTAGAAATGATCATATTGTTATAATTAGCCCACATCTCCTCTATTTTCTTTTGCTTATTAGTTAATGAACCGCTAAAACAGCTCCCCGCCACCGCTTGCTCTATTACTCCCCTTCTCAGATCCTCACTCTTCACACTCCAACTCCCTCCAGTCTTCAACAACCGTCGGTGGAGCTCCACTTTCCGACGATAAGGTAAAATTTCTAACAAATTTTGATGTATAAGTCATGTGCCTTCTTTGGTTACTTTTAGCTTACCAATTCATGTTCTGAATCATGCCCATCCAATTTCAGATCACATTGTTTCATTGGAATTTCCCCTGGTTAACTGCAGCTGATCTGTATGTCATTGCCAATGCTGTTTTGTTTTCTCTAGTTTCGGGTTGA

mRNA sequence

ATGACTGAGAACTCCCCGCCACCGCTTGCTCTATTACTCCCCTTCTCAGATCCTCACTCTTCACACTCCAACTCCCTCCAGTCTTCAACAACCGTCGGTGGAGCTCCACTTTCCGACGATAAGATCACATTGTTTCATTGGAATTTCCCCTGGTTAACTGCAGCTGATCTGTATGTCATTGCCAATGCTGTTTTGTTTTCTCTAGTTTCGGGTTGA

Coding sequence (CDS)

ATGACTGAGAACTCCCCGCCACCGCTTGCTCTATTACTCCCCTTCTCAGATCCTCACTCTTCACACTCCAACTCCCTCCAGTCTTCAACAACCGTCGGTGGAGCTCCACTTTCCGACGATAAGATCACATTGTTTCATTGGAATTTCCCCTGGTTAACTGCAGCTGATCTGTATGTCATTGCCAATGCTGTTTTGTTTTCTCTAGTTTCGGGTTGA

Protein sequence

MTENSPPPLALLLPFSDPHSSHSNSLQSSTTVGGAPLSDDKITLFHWNFPWLTAADLYVIANAVLFSLVSG
Homology
[Close]
BLAST of CsaV3_6G000940 vs. NCBI nr
Match: KGN45701.1 (hypothetical protein Csa_6G006860 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 2.3e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MTENSPPPLALLLPFSDPHSSHSNSLQSSTTVGGAPLSDDKITLFHWNFPWLTAADLYVI 60
          MTENSPPPLALLLPFSDPHSSHSNSLQSSTTVGGAPLSDDKITLFHWNFPWLTAADLYVI
Sbjct: 1  MTENSPPPLALLLPFSDPHSSHSNSLQSSTTVGGAPLSDDKITLFHWNFPWLTAADLYVI 60

Query: 61 ANAVLFSLVSG 72
          ANAVLFSLVSG
Sbjct: 61 ANAVLFSLVSG 71

[Close]
BLAST of CsaV3_6G000940 vs. TrEMBL
Match: tr|A0A0A0KD38|A0A0A0KD38_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006860 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MTENSPPPLALLLPFSDPHSSHSNSLQSSTTVGGAPLSDDKITLFHWNFPWLTAADLYVI 60
          MTENSPPPLALLLPFSDPHSSHSNSLQSSTTVGGAPLSDDKITLFHWNFPWLTAADLYVI
Sbjct: 1  MTENSPPPLALLLPFSDPHSSHSNSLQSSTTVGGAPLSDDKITLFHWNFPWLTAADLYVI 60

Query: 61 ANAVLFSLVSG 72
          ANAVLFSLVSG
Sbjct: 61 ANAVLFSLVSG 71

The following BLAST results are available for this feature:
BLAST of CsaV3_6G000940 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45701.12.3e-32100.00hypothetical protein Csa_6G006860 [Cucumis sativus][more]
BLAST of CsaV3_6G000940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G000940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G000940 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KD38|A0A0A0KD38_CUCSA1.5e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006860 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G000940.1CsaV3_6G000940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G000940Wax gourdcucwgoB555
CsaV3_6G000940Wax gourdcucwgoB560
CsaV3_6G000940Cucumber (Chinese Long) v3cuccucB151
CsaV3_6G000940Silver-seed gourdcarcucB0637
CsaV3_6G000940Silver-seed gourdcarcucB0650
CsaV3_6G000940Cucumber (Gy14) v2cgybcucB152
CsaV3_6G000940Cucumber (Gy14) v2cgybcucB298
CsaV3_6G000940Cucumber (Gy14) v1cgycucB203
CsaV3_6G000940Cucurbita maxima (Rimu)cmacucB0440
CsaV3_6G000940Cucurbita maxima (Rimu)cmacucB1073
CsaV3_6G000940Cucurbita moschata (Rifu)cmocucB0432
CsaV3_6G000940Cucurbita moschata (Rifu)cmocucB1055
CsaV3_6G000940Cucurbita pepo (Zucchini)cpecucB0165
CsaV3_6G000940Cucurbita pepo (Zucchini)cpecucB0395
CsaV3_6G000940Wild cucumber (PI 183967)cpicucB189
CsaV3_6G000940Wild cucumber (PI 183967)cpicucB364
CsaV3_6G000940Bottle gourd (USVL1VR-Ls)cuclsiB418
CsaV3_6G000940Melon (DHL92) v3.5.1cucmeB430
CsaV3_6G000940Melon (DHL92) v3.5.1cucmeB511
CsaV3_6G000940Melon (DHL92) v3.6.1cucmedB420
CsaV3_6G000940Melon (DHL92) v3.6.1cucmedB499
CsaV3_6G000940Watermelon (Charleston Gray)cucwcgB502
CsaV3_6G000940Watermelon (97103) v1cucwmB565
CsaV3_6G000940Watermelon (97103) v2cucwmbB431
CsaV3_6G000940Watermelon (97103) v2cucwmbB492