CsaV3_6G000740 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G000740
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	pollen-specific leucine-rich repeat extensin-like protein 3
Location	chr6 : 478360 .. 480136 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTTAGCAACAATGAATTGAGAGGCTCTGTCTCTGGAGGCCTTTGTAAGTTGCCTAAATTGGCTAACTTCACCTTCTCCTTTAATTACTTTAATGGAGAAGATGCGGCATGTGCTACATCTAAAGGATCAGAGAAGCTCTTTGACGATAGTCAAAATTGTTTGGCAAATCGACCTATGCAGAAAGATGCAAACAAATGTAGCACTGTCTTGAAGAAATCAGTGGACTGTGGAAGTTGTGGTGGTGGGTCGAGTTCTCCTGGTGTGCCGTCGACCTTTGAGGATCCATATGATCAGTCTCCATTGCCAAGATATAGGTCTCCACCACCTCCAGTTGTGACTCCACCATCTCCAAGCGAGACCTCTGTTCCATCATCACCACCGTCTCCAATTGAGTCTTCACCACCAACCTCGACTCCATCCCCACCACCCCCCGTCCACTCTCCTCCACCGCCTGTTCACTCACCACCACCACCGGTTTCCTCTCCTCCACCACCAGTTCACTCTCCACCACCACCGGTTCACTCTCCACCTCCACCGGTTCACTCCCCACCTCCTCCAGTTCACTCACCACCACCACCGGTCTCCTCTCCTCCACCTCCTGTTCACTCACCACCACCACCGATCTCGTCTCCTCCCCCTCCTGTTCACTCACCACCACCACCGATTTTCTCTCCACCTCCACCGATTCACTCTCCACCTCCACCTGTTTACTCTCCACCTCCACCGGTTCACTCTCCACCACCCCCTGTCCACTCCCCACCACCCCCTGTCCACTCTCCACCACCCCCAGTCCATTCCCCACCCCCACCTGTCTACTCTCCACCTCCACCGGTTCAATCTCCACCACCACCAGTTTACTCTCCACCGCCACCTGTCTACTCTCCACCACCACCAGTCCAATCTCCACCACCACCAGTCCAATCTCCACCACCTCCAACGTCATCTCCTCCTCCTCCTCCTCCCGATTCTTCACCACCACCATCATTTGAAGATGTGATCCTCCCACCAAATATCGGCTTCCAATACGCATCACCGCCTCCACCATTGTTTCCCGGTTACTAAGGAGTCTCATCTCAAATAATCCCAAGTTTTATTGAGAGCCAATAGTTTCATGACTATACTTGTAACCCTATTTACTCTTACATAAAAATTCAAAATATTACAACTTTGTCATATACATTTGACATCTTAAAATTTTTCTTATTAGTGTAGCTTTGATCTTCTTACTCAAATGAAGAGAGAAATTTTTATCACTTAACTATTTGAACTAAAGTGTCTAGATATATATTTATATATATTTTAGTTGTATACATATATTAAGTGTGTTATCACAACATAACCATATGATAACTAATGAGTACTAAAATTGTTGCTTAAAATATGCTACCAAACTGCTACATGTCTTTCTATTTTAGTTTTAAAAGTAATCAGTTGAAAACCCTCCCCATCTCATGTGGTTTATACTAAAAATTCATAATGTATGTTATTAAAGGTTAAACAAAACAAATATCAGAATAACTTACAAGTTAAAAAATTTGAACCATTGGAGAAAAATTTAACGGTTGCCTTCTTCAATGACATATTTCAACTTAATCTACTTTCTTTTTTTTCACAAAATTTTACTGTTTACTAAAGATCTCAAATTAGTTAAAAAATTTTAGTGTTGTAAGAGATAGTAAGATTCTATCCATAAACTTTTTAATTCTTAACCTACTTTTAACCAAGTTGAGTTATAGTTTTTTTTTTAATTTATTAGTCAAGAAAATAGCAC

mRNA sequence

ATGGACGTTAGCAACAATGAATTGAGAGGCTCTGTCTCTGGAGGCCTTTGTAAGTTGCCTAAATTGGCTAACTTCACCTTCTCCTTTAATTACTTTAATGGAGAAGATGCGGCATGTGCTACATCTAAAGGATCAGAGAAGCTCTTTGACGATAGTCAAAATTGTTTGGCAAATCGACCTATGCAGAAAGATGCAAACAAATGTAGCACTGTCTTGAAGAAATCAGTGGACTGTGGAAGTTGTGGTGGTGGGTCGAGTTCTCCTGGTGTGCCGTCGACCTTTGAGGATCCATATGATCAGTCTCCATTGCCAAGATATAGGTCTCCACCACCTCCAGTTGTGACTCCACCATCTCCAAGCGAGACCTCTGTTCCATCATCACCACCGTCTCCAATTGAGTCTTCACCACCAACCTCGACTCCATCCCCACCACCCCCCGTCCACTCTCCTCCACCGCCTGTTCACTCACCACCACCACCGGTTTCCTCTCCTCCACCACCAGTTCACTCTCCACCACCACCGGTTCACTCTCCACCTCCACCGGTTCACTCCCCACCTCCTCCAGTTCACTCACCACCACCACCGGTCTCCTCTCCTCCACCTCCTGTTCACTCACCACCACCACCGATCTCGTCTCCTCCCCCTCCTGTTCACTCACCACCACCACCGATTTTCTCTCCACCTCCACCGATTCACTCTCCACCTCCACCTGTTTACTCTCCACCTCCACCGGTTCACTCTCCACCACCCCCTGTCCACTCCCCACCACCCCCTGTCCACTCTCCACCACCCCCAGTCCATTCCCCACCCCCACCTGTCTACTCTCCACCTCCACCGGTTCAATCTCCACCACCACCAGTTTACTCTCCACCGCCACCTGTCTACTCTCCACCACCACCAGTCCAATCTCCACCACCACCAGTCCAATCTCCACCACCTCCAACGTCATCTCCTCCTCCTCCTCCTCCCGATTCTTCACCACCACCATCATTTGAAGATGTGATCCTCCCACCAAATATCGGCTTCCAATACGCATCACCGCCTCCACCATTGTTTCCCGGTTACTAA

Coding sequence (CDS)

ATGGACGTTAGCAACAATGAATTGAGAGGCTCTGTCTCTGGAGGCCTTTGTAAGTTGCCTAAATTGGCTAACTTCACCTTCTCCTTTAATTACTTTAATGGAGAAGATGCGGCATGTGCTACATCTAAAGGATCAGAGAAGCTCTTTGACGATAGTCAAAATTGTTTGGCAAATCGACCTATGCAGAAAGATGCAAACAAATGTAGCACTGTCTTGAAGAAATCAGTGGACTGTGGAAGTTGTGGTGGTGGGTCGAGTTCTCCTGGTGTGCCGTCGACCTTTGAGGATCCATATGATCAGTCTCCATTGCCAAGATATAGGTCTCCACCACCTCCAGTTGTGACTCCACCATCTCCAAGCGAGACCTCTGTTCCATCATCACCACCGTCTCCAATTGAGTCTTCACCACCAACCTCGACTCCATCCCCACCACCCCCCGTCCACTCTCCTCCACCGCCTGTTCACTCACCACCACCACCGGTTTCCTCTCCTCCACCACCAGTTCACTCTCCACCACCACCGGTTCACTCTCCACCTCCACCGGTTCACTCCCCACCTCCTCCAGTTCACTCACCACCACCACCGGTCTCCTCTCCTCCACCTCCTGTTCACTCACCACCACCACCGATCTCGTCTCCTCCCCCTCCTGTTCACTCACCACCACCACCGATTTTCTCTCCACCTCCACCGATTCACTCTCCACCTCCACCTGTTTACTCTCCACCTCCACCGGTTCACTCTCCACCACCCCCTGTCCACTCCCCACCACCCCCTGTCCACTCTCCACCACCCCCAGTCCATTCCCCACCCCCACCTGTCTACTCTCCACCTCCACCGGTTCAATCTCCACCACCACCAGTTTACTCTCCACCGCCACCTGTCTACTCTCCACCACCACCAGTCCAATCTCCACCACCACCAGTCCAATCTCCACCACCTCCAACGTCATCTCCTCCTCCTCCTCCTCCCGATTCTTCACCACCACCATCATTTGAAGATGTGATCCTCCCACCAAATATCGGCTTCCAATACGCATCACCGCCTCCACCATTGTTTCCCGGTTACTAA

Protein sequence

MDVSNNELRGSVSGGLCKLPKLANFTFSFNYFNGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGSCGGGSSSPGVPSTFEDPYDQSPLPRYRSPPPPVVTPPSPSETSVPSSPPSPIESSPPTSTPSPPPPVHSPPPPVHSPPPPVSSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVSSPPPPVHSPPPPISSPPPPVHSPPPPIFSPPPPIHSPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVQSPPPPVYSPPPPVYSPPPPVQSPPPPVQSPPPPTSSPPPPPPDSSPPPSFEDVILPPNIGFQYASPPPPLFPGY

Homology

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BLAST of CsaV3_6G000740 vs. NCBI nr
Match: KGN45676.1 (hypothetical protein Csa_6G005160 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-33
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 29  FNYFNGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGSCGGGSSSP 88
           FNYF+GEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCG+CGGGSSSP
Sbjct: 251 FNYFDGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGNCGGGSSSP 310

Query: 89  GVPSTFEDPYDQSP 103
           GVPSTFEDPYDQSP
Sbjct: 311 GVPSTFEDPYDQSP 324

HSP 2 Score: 58.2 bits (139), Expect = 6.8e-05
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 331 FEDVILPPNIGFQYASPPPPLFPGY 356
           FEDVILPPNIGF+YASPPPPLFPGY
Sbjct: 503 FEDVILPPNIGFEYASPPPPLFPGY 527

[Close]

BLAST of CsaV3_6G000740 vs. NCBI nr
Match: XP_011656352.1 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 isoform X1 [Cucumis sativus] >XP_011656353.1 PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-33
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 29  FNYFNGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGSCGGGSSSP 88
           FNYF+GEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCG+CGGGSSSP
Sbjct: 345 FNYFDGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGNCGGGSSSP 404

Query: 89  GVPSTFEDPYDQSP 103
           GVPSTFEDPYDQSP
Sbjct: 405 GVPSTFEDPYDQSP 418

HSP 2 Score: 58.2 bits (139), Expect = 6.8e-05
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 331 FEDVILPPNIGFQYASPPPPLFPGY 356
           FEDVILPPNIGF+YASPPPPLFPGY
Sbjct: 597 FEDVILPPNIGFEYASPPPPLFPGY 621

[Close]

BLAST of CsaV3_6G000740 vs. NCBI nr
Match: KGN45680.1 (hypothetical protein Csa_6G006180 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 2.9e-32
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 31  YFNGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGSCGGGSSSPGV 90
           YF+GEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCG+CGGGSSSPGV
Sbjct: 345 YFDGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGNCGGGSSSPGV 404

Query: 91  PSTFEDPYDQSP 103
           PSTFEDPYDQSP
Sbjct: 405 PSTFEDPYDQSP 416

HSP 2 Score: 53.9 bits (128), Expect = 1.3e-03
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 331 FEDVILPPNIGFQYASPPPPLFP 354
           FEDVILPPNIGFQYASPPPPLFP
Sbjct: 577 FEDVILPPNIGFQYASPPPPLFP 599

[Close]

BLAST of CsaV3_6G000740 vs. NCBI nr
Match: XP_011656354.1 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 2.9e-32
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 31  YFNGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGSCGGGSSSPGV 90
           YF+GEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCG+CGGGSSSPGV
Sbjct: 355 YFDGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGNCGGGSSSPGV 414

Query: 91  PSTFEDPYDQSP 103
           PSTFEDPYDQSP
Sbjct: 415 PSTFEDPYDQSP 426

HSP 2 Score: 59.3 bits (142), Expect = 3.1e-05
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 331 FEDVILPPNIGFQYASPPPPLFPGY 356
           FEDVILPPNIGFQYASPPPPLFPGY
Sbjct: 587 FEDVILPPNIGFQYASPPPPLFPGY 611

[Close]

BLAST of CsaV3_6G000740 vs. NCBI nr
Match: XP_016902246.1 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3, partial [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 1.8e-29
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 24  NFTFSFNYFNGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGSCGG 83
           NFTFSFNYF+ +D  C  SKGS+K+F+D QNCLANRP+QKDANKCSTVLKKSV+CG+CGG
Sbjct: 334 NFTFSFNYFDRQDTTCVASKGSKKVFNDGQNCLANRPVQKDANKCSTVLKKSVECGNCGG 393

Query: 84  GSSSPGVPSTFEDPYDQSP 103
           GSSSPGVPST EDPYDQSP
Sbjct: 394 GSSSPGVPSTPEDPYDQSP 412

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BLAST of CsaV3_6G000740 vs. TAIR10
Match: AT2G15880.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 65.5 bits (158), Expect = 7.7e-11
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 24  NFTFSFNYFNGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCG--SC 83
           N T+++NYFNG+  +C      +   DD++NCL +RP Q+ A +C+ V+ + VDC    C
Sbjct: 326 NLTYAYNYFNGQGDSCVPGSQKQIALDDTRNCLPDRPKQRSAKECAVVISRPVDCSKDKC 385

Query: 84  GGGSSSPGVPSTFEDPYDQSPL 104
            GGSS    PS    P    P+
Sbjct: 386 AGGSSQ-ATPSKSPSPVPTRPV 406

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BLAST of CsaV3_6G000740 vs. TAIR10
Match: AT4G33970.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 52.8 bits (125), Expect = 5.2e-07
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 34  GEDAACATSKGSEK--LFDDSQNCLANRPMQKDANKCSTVLKKSVDCG--SCGGGSSSPG 93
           G+  +C    GS K    DD++NCLA+RP Q+ A +C+ V+ + VDC    C GGSS+P 
Sbjct: 362 GQGGSCVPG-GSRKEIALDDTRNCLASRPEQRSAQECAVVINRPVDCSKDKCAGGSSTPS 421

[Close]

BLAST of CsaV3_6G000740 vs. TAIR10
Match: AT3G19020.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 48.5 bits (114), Expect = 9.8e-06
Identity = 19/24 (79.17%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 332 EDVILPPNIGFQYASPPPPLFPGY 356
           ++ ILPPNIG QYASPPPP+FPGY
Sbjct: 933 DNFILPPNIGHQYASPPPPMFPGY 956

HSP 2 Score: 48.1 bits (113), Expect = 1.3e-05
Identity = 20/41 (48.78%), Postives = 25/41 (60.98%), Query Frame = 0


Query: 38  ACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDC 79
           +C      EK FDD+ NCL NRP QK A +C  V+ + VDC
Sbjct: 352 SCVPGSSQEKQFDDTSNCLQNRPNQKSAKECLPVVSRPVDC 392

[Close]

BLAST of CsaV3_6G000740 vs. TAIR10
Match: AT1G49490.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 47.4 bits (111), Expect = 2.2e-05
Identity = 20/44 (45.45%), Postives = 27/44 (61.36%), Query Frame = 0


Query: 35  EDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDC 79
           E  +C   + + K FDD+ NCL NRP QK A +C  V+ + VDC
Sbjct: 336 EAESCVPGRNNGKQFDDTNNCLQNRPSQKPAKQCLPVVSRPVDC 379

HSP 2 Score: 43.5 bits (101), Expect = 3.1e-04
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 0


Query: 336 LPPNIGFQYASPPPPLFPGY 356
           LPP+IGFQYASPPPP+F GY
Sbjct: 828 LPPHIGFQYASPPPPMFQGY 847

[Close]

BLAST of CsaV3_6G000740 vs. Swiss-Prot
Match: sp|Q9XIL9|PLRX3_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=PEX3 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-09
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 24  NFTFSFNYFNGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCG--SC 83
           N T+++NYFNG+  +C      +   DD++NCL +RP Q+ A +C+ V+ + VDC    C
Sbjct: 326 NLTYAYNYFNGQGDSCVPGSQKQIALDDTRNCLPDRPKQRSAKECAVVISRPVDCSKDKC 385

Query: 84  GGGSSSPGVPSTFEDPYDQSPL 104
            GGSS    PS    P    P+
Sbjct: 386 AGGSSQ-ATPSKSPSPVPTRPV 406

[Close]

BLAST of CsaV3_6G000740 vs. Swiss-Prot
Match: sp|O81765|PLRX4_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=PEX4 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.4e-06
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 34  GEDAACATSKGSEK--LFDDSQNCLANRPMQKDANKCSTVLKKSVDCG--SCGGGSSSPG 93
           G+  +C    GS K    DD++NCLA+RP Q+ A +C+ V+ + VDC    C GGSS+P 
Sbjct: 362 GQGGSCVPG-GSRKEIALDDTRNCLASRPEQRSAQECAVVINRPVDCSKDKCAGGSSTPS 421

[Close]

BLAST of CsaV3_6G000740 vs. Swiss-Prot
Match: sp|Q9LJ64|PLRX1_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=PEX1 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.8e-04
Identity = 19/24 (79.17%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 332 EDVILPPNIGFQYASPPPPLFPGY 356
           ++ ILPPNIG QYASPPPP+FPGY
Sbjct: 933 DNFILPPNIGHQYASPPPPMFPGY 956

HSP 2 Score: 48.1 bits (113), Expect = 2.3e-04
Identity = 20/41 (48.78%), Postives = 25/41 (60.98%), Query Frame = 0


Query: 38  ACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDC 79
           +C      EK FDD+ NCL NRP QK A +C  V+ + VDC
Sbjct: 352 SCVPGSSQEKQFDDTSNCLQNRPNQKSAKECLPVVSRPVDC 392

[Close]

BLAST of CsaV3_6G000740 vs. Swiss-Prot
Match: sp|Q9XIB6|PLRX2_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=PEX2 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 3.9e-04
Identity = 20/44 (45.45%), Postives = 27/44 (61.36%), Query Frame = 0


Query: 35  EDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDC 79
           E  +C   + + K FDD+ NCL NRP QK A +C  V+ + VDC
Sbjct: 336 EAESCVPGRNNGKQFDDTNNCLQNRPSQKPAKQCLPVVSRPVDC 379

HSP 2 Score: 43.5 bits (101), Expect = 5.7e-03
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 0


Query: 336 LPPNIGFQYASPPPPLFPGY 356
           LPP+IGFQYASPPPP+F GY
Sbjct: 828 LPPHIGFQYASPPPPMFQGY 847

[Close]

BLAST of CsaV3_6G000740 vs. TrEMBL
Match: tr|A0A0A0KD15|A0A0A0KD15_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G005160 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 7.9e-34
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 29  FNYFNGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGSCGGGSSSP 88
           FNYF+GEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCG+CGGGSSSP
Sbjct: 251 FNYFDGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGNCGGGSSSP 310

Query: 89  GVPSTFEDPYDQSP 103
           GVPSTFEDPYDQSP
Sbjct: 311 GVPSTFEDPYDQSP 324

HSP 2 Score: 58.2 bits (139), Expect = 4.5e-05
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 331 FEDVILPPNIGFQYASPPPPLFPGY 356
           FEDVILPPNIGF+YASPPPPLFPGY
Sbjct: 503 FEDVILPPNIGFEYASPPPPLFPGY 527

[Close]

BLAST of CsaV3_6G000740 vs. TrEMBL
Match: tr|A0A0A0K7H4|A0A0A0K7H4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006180 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.9e-32
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 31  YFNGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGSCGGGSSSPGV 90
           YF+GEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCG+CGGGSSSPGV
Sbjct: 345 YFDGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGNCGGGSSSPGV 404

Query: 91  PSTFEDPYDQSP 103
           PSTFEDPYDQSP
Sbjct: 405 PSTFEDPYDQSP 416

HSP 2 Score: 53.9 bits (128), Expect = 8.5e-04
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 331 FEDVILPPNIGFQYASPPPPLFP 354
           FEDVILPPNIGFQYASPPPPLFP
Sbjct: 577 FEDVILPPNIGFQYASPPPPLFP 599

[Close]

BLAST of CsaV3_6G000740 vs. TrEMBL
Match: tr|A0A1S4E1Z4|A0A1S4E1Z4_CUCME (pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103498004 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-29
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 24  NFTFSFNYFNGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGSCGG 83
           NFTFSFNYF+ +D  C  SKGS+K+F+D QNCLANRP+QKDANKCSTVLKKSV+CG+CGG
Sbjct: 334 NFTFSFNYFDRQDTTCVASKGSKKVFNDGQNCLANRPVQKDANKCSTVLKKSVECGNCGG 393

Query: 84  GSSSPGVPSTFEDPYDQSP 103
           GSSSPGVPST EDPYDQSP
Sbjct: 394 GSSSPGVPSTPEDPYDQSP 412

[Close]

BLAST of CsaV3_6G000740 vs. TrEMBL
Match: tr|A0A1S3C8I6|A0A1S3C8I6_CUCME (pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103498003 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-26
Identity = 58/72 (80.56%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 29  FNYFNGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGSCGGGSSSP 88
           FNYF+G+D  C  SKGSEK+F+D QNCLANRP+QKDANKCSTVLKKS++CG+CGGGSSSP
Sbjct: 356 FNYFDGQDTTCVASKGSEKVFNDGQNCLANRPVQKDANKCSTVLKKSMECGNCGGGSSSP 415

Query: 89  GVPSTFEDPYDQ 101
           GVPST EDPYDQ
Sbjct: 416 GVPSTPEDPYDQ 427

[Close]

BLAST of CsaV3_6G000740 vs. TrEMBL
Match: tr|A0A1S4E1Z5|A0A1S4E1Z5_CUCME (LOW QUALITY PROTEIN: pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103497703 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-25
Identity = 57/68 (83.82%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 32  FNGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGSCGGGSSSPGVP 91
           F+G+DAAC  SKGSEK+FDD QNCLANRP+QKDANKCST+LKKSV+CG+CGGGSSSPGVP
Sbjct: 346 FDGKDAACVASKGSEKIFDDGQNCLANRPVQKDANKCSTILKKSVECGNCGGGSSSPGVP 405

Query: 92  STFEDPYD 100
           ST EDPYD
Sbjct: 406 STPEDPYD 413

The following BLAST results are available for this feature:

BLAST of CsaV3_6G000740 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45676.1	1.2e-33	97.30	hypothetical protein Csa_6G005160 [Cucumis sativus]	[more]
XP_011656352.1	1.2e-33	97.30	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 isoform X...	[more]
KGN45680.1	2.9e-32	97.22	hypothetical protein Csa_6G006180 [Cucumis sativus]	[more]
XP_011656354.1	2.9e-32	97.22	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Cucumis ...	[more]
XP_016902246.1	1.8e-29	81.01	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3, partial ...	[more]

BLAST of CsaV3_6G000740 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15880.1	7.7e-11	37.80	Leucine-rich repeat (LRR) family protein	[more]
AT4G33970.1	5.2e-07	44.44	Leucine-rich repeat (LRR) family protein	[more]
AT3G19020.1	9.8e-06	79.17	Leucine-rich repeat (LRR) family protein	[more]
AT1G49490.1	2.2e-05	45.45	Leucine-rich repeat (LRR) family protein	[more]

BLAST of CsaV3_6G000740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9XIL9\|PLRX3_ARATH	1.4e-09	37.80	Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thali...	[more]
sp\|O81765\|PLRX4_ARATH	9.4e-06	44.44	Pollen-specific leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thali...	[more]
sp\|Q9LJ64\|PLRX1_ARATH	1.8e-04	79.17	Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thali...	[more]
sp\|Q9XIB6\|PLRX2_ARATH	3.9e-04	45.45	Pollen-specific leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thali...	[more]

BLAST of CsaV3_6G000740 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KD15\|A0A0A0KD15_CUCSA	7.9e-34	97.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G005160 PE=4 SV=1	[more]
tr\|A0A0A0K7H4\|A0A0A0K7H4_CUCSA	1.9e-32	97.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006180 PE=4 SV=1	[more]
tr\|A0A1S4E1Z4\|A0A1S4E1Z4_CUCME	1.2e-29	81.01	pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3...	[more]
tr\|A0A1S3C8I6\|A0A1S3C8I6_CUCME	1.6e-26	80.56	pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3...	[more]
tr\|A0A1S4E1Z5\|A0A1S4E1Z5_CUCME	1.8e-25	83.82	LOW QUALITY PROTEIN: pollen-specific leucine-rich repeat extensin-like protein 3...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G000740.1	CsaV3_6G000740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 153..178 score: 36.92 coord: 133..150 score: 55.56 coord: 84..105 score: 28.18 coord: 110..126 score: 34.12
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..334
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..355
None	No IPR available	PANTHER	PTHR44852	FAMILY NOT NAMED	coord: 1..195 coord: 213..355

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G000740	Cucumber (Chinese Long) v3	cuccucB151
CsaV3_6G000740	Cucumber (Chinese Long) v3	cuccucB204
CsaV3_6G000740	Silver-seed gourd	carcucB0081
CsaV3_6G000740	Silver-seed gourd	carcucB0637
CsaV3_6G000740	Cucumber (Gy14) v2	cgybcucB152
CsaV3_6G000740	Cucumber (Gy14) v2	cgybcucB243
CsaV3_6G000740	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G000740	Cucumber (Gy14) v1	cgycucB203
CsaV3_6G000740	Cucumber (Gy14) v1	cgycucB471
CsaV3_6G000740	Cucurbita maxima (Rimu)	cmacucB0440
CsaV3_6G000740	Cucurbita maxima (Rimu)	cmacucB1073
CsaV3_6G000740	Cucurbita moschata (Rifu)	cmocucB0363
CsaV3_6G000740	Cucurbita moschata (Rifu)	cmocucB0432
CsaV3_6G000740	Cucurbita moschata (Rifu)	cmocucB1055
CsaV3_6G000740	Cucurbita pepo (Zucchini)	cpecucB0165
CsaV3_6G000740	Cucurbita pepo (Zucchini)	cpecucB0242
CsaV3_6G000740	Cucurbita pepo (Zucchini)	cpecucB0395
CsaV3_6G000740	Wild cucumber (PI 183967)	cpicucB189
CsaV3_6G000740	Wild cucumber (PI 183967)	cpicucB307
CsaV3_6G000740	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G000740	Bottle gourd (USVL1VR-Ls)	cuclsiB418
CsaV3_6G000740	Bottle gourd (USVL1VR-Ls)	cuclsiB429
CsaV3_6G000740	Melon (DHL92) v3.5.1	cucmeB426
CsaV3_6G000740	Melon (DHL92) v3.5.1	cucmeB430
CsaV3_6G000740	Melon (DHL92) v3.5.1	cucmeB511
CsaV3_6G000740	Melon (DHL92) v3.6.1	cucmedB417
CsaV3_6G000740	Melon (DHL92) v3.6.1	cucmedB420
CsaV3_6G000740	Melon (DHL92) v3.6.1	cucmedB499
CsaV3_6G000740	Watermelon (Charleston Gray)	cucwcgB456
CsaV3_6G000740	Watermelon (Charleston Gray)	cucwcgB502
CsaV3_6G000740	Watermelon (97103) v1	cucwmB529
CsaV3_6G000740	Watermelon (97103) v1	cucwmB564
CsaV3_6G000740	Watermelon (97103) v1	cucwmB565
CsaV3_6G000740	Watermelon (97103) v2	cucwmbB431
CsaV3_6G000740	Watermelon (97103) v2	cucwmbB492
CsaV3_6G000740	Wax gourd	cucwgoB550
CsaV3_6G000740	Wax gourd	cucwgoB560