CsaV3_6G000730 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AACACAGCGACAACCCATTTCACCATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCCTGCTTTCTTCTTCTTCTTCTTCTTTTCCTCTTTATCTCTCTCCCATCTCTCACTCTCTCTGTCTCCCAAGCCGAAGTTTCATATATTACTCAACGTCAACTATTGACTCTAAAAGAACACGATCAACTCCCCGATGACTTCAAATATGAACTTGACATTCCTGACACTTTTCCAAATGAGAGGTTGAAGAAAGCTTATGTAGCTCTTCAAGCGTGGAAATTAGCTGTTTATTCCGACCCAAAAAACATGACCGTCAATTGGGTTGGCGCCAATGTTTGTTCTTACAACGGTGTCTTCTGTGCTCCAGCGCTTGATGACCCAAAAATTGAGGTTGTGGCTGGCATTGATTTGAATGACGGTGACATTGCAGGGTACTTGCCTCCGGAACTCGGGCTTTTGACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTTTGTGGGATCATTCCTTCTAGTTTCTCAAAGCTTGTACTTATGTTTGAGTTTGATGTCAGCAACAACCGCTTCGTTGGTCACTTTCCACTTGTTGTCCTCGAATGGTCGAGTGCGAAGTACCTCGATCTCAGGTACAATGACTTCGAAGGAGAAATCCCCTCCACACTTTTCACCAACGAGTTTGACGCCATCTTCTTGAACAACAATAGATTCAATTCTTTAATTCCTGAAACCATTGGAAACTCCACCGTCTCTGTTGTCTCCTTCGCCAACAACGAATTCCATGGCTGCATTCCTAGCACCATTGGCCAAATGTCTAACCTCAACCAAATTCTCTTCATCGGTAACAAGCTCAGTGGTTGTTTTCCACCTGAGATCGGAAACCTCGTCAATCTCACAGTCTTTGATGTTAGCAACAATGGCTTCATAGGCCAATTGCCAGAATCATTGTCTGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAACGAACTGAGGGGCTCTGTCTCTGGTGATCTTTGCAAGTTGCCTAAATTGGCTAACTTCACTTTCTCCTTTAATTACTTTGATGGAGAAGATGCGGCATGTGCTACATCTAAAGGATCAGAGAAGCTCTTTGACGATAGTCAAAATTGTTTGGCAAATCGACCTATGCAGAAAGATGCAAACAAATGTAGCACTGTCTTGAAGAAATCAGTGGACTGTGGAAATTGTGGTGGTGGGTCGAGTTCTCCTGGTGTGCCGTCGACCTTTGAGGATCCATACGATCAGTCTCCATCGCCAAGATATAGGTCTCCACCACCTCCAGTTGTGACTCCACCATCTCCAAGTGAGACCTCTGTTCCATCGTCGCCATCTATCACTGAAACACCTACTTCATCTCCAGCTGAATCTCCCCTACCACCAGTCTATTCCCCTCCTCCACCACCGGTTCATTCCCCACCACCCCCGTCCACTCTCCTCCACCCCCTGTTCATTCACCACCACCCCCGATCTCCTCACCTCCACCTCCTGTTCACTCACCACCACCACCAGTTCACTCTCCACCTCCACCGATTTACTCCCCACCACCCCCTGTCTACTCTCCACCACCTCCTGTCCACTCCCCACCACCACCGGTTCACTCTCCACCACCCCCCGTCCACTCTCCACCACCCCCTGTCTACTCTCCACCACCACCAGTCTATTCTCCACCACCACCTGTCTACTCTCCTCCACCTCCACCTGTTTACTCCCCACCGCCACCAGTTCAATCTCCACCACCTCCGATTGCATCTCCTCCTCCTCCCGATTCTTCACCACCACCGTCATTTGAAGATGTGATTCTCCCACCAAATATTGGCTTCGAATATGCATCACCGCCTCCACCGTTGTTTCCCGGTTATTGAGGAGTCTCATCTCAAATAATCTAAAGTTTTATCGAGAGCCGTTAGTTTTATCACTACATCATGTTCGATTGTAACCCTATTTACTCTTTCATCAAAATTCAAAATATCATTTCTTTGTCGAATACATTTGACACCTTAAATTTTTCTCATTAGTGTAGCTTCGATCTTCTTTACTGAAATGAAGAGATAATTTTTATCCACTTTACC ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCCTGCTTTCTTCTTCTTCTTCTTCTTTTCCTCTTTATCTCTCTCCCATCTCTCACTCTCTCTGTCTCCCAAGCCGAAGTTTCATATATTACTCAACGTCAACTATTGACTCTAAAAGAACACGATCAACTCCCCGATGACTTCAAATATGAACTTGACATTCCTGACACTTTTCCAAATGAGAGGTTGAAGAAAGCTTATGTAGCTCTTCAAGCGTGGAAATTAGCTGTTTATTCCGACCCAAAAAACATGACCGTCAATTGGGTTGGCGCCAATGTTTGTTCTTACAACGGTGTCTTCTGTGCTCCAGCGCTTGATGACCCAAAAATTGAGGTTGTGGCTGGCATTGATTTGAATGACGGTGACATTGCAGGGTACTTGCCTCCGGAACTCGGGCTTTTGACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTTTGTGGGATCATTCCTTCTAGTTTCTCAAAGCTTGTACTTATGTTTGAGTTTGATGTCAGCAACAACCGCTTCGTTGGTCACTTTCCACTTGTTGTCCTCGAATGGTCGAGTGCGAAGTACCTCGATCTCAGGTACAATGACTTCGAAGGAGAAATCCCCTCCACACTTTTCACCAACGAGTTTGACGCCATCTTCTTGAACAACAATAGATTCAATTCTTTAATTCCTGAAACCATTGGAAACTCCACCGTCTCTGTTGTCTCCTTCGCCAACAACGAATTCCATGGCTGCATTCCTAGCACCATTGGCCAAATGTCTAACCTCAACCAAATTCTCTTCATCGGTAACAAGCTCAGTGGTTGTTTTCCACCTGAGATCGGAAACCTCGTCAATCTCACAGTCTTTGATGTTAGCAACAATGGCTTCATAGGCCAATTGCCAGAATCATTGTCTGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAACGAACTGAGGGGCTCTGTCTCTGGTGATCTTTGCAAGTTGCCTAAATTGGCTAACTTCACTTTCTCCTTTAATTACTTTGATGGAGAAGATGCGGCATGTGCTACATCTAAAGGATCAGAGAAGCTCTTTGACGATAGTCAAAATTGTTTGGCAAATCGACCTATGCAGAAAGATGCAAACAAATGTAGCACTGTCTTGAAGAAATCAGTGGACTGTGGAAATTGTGGTGGTGGGTCGAGTTCTCCTGGTGTGCCGTCGACCTTTGAGGATCCATACGATCAGTCTCCATCGCCAAGATATAGGTCTCCACCACCTCCAGTTGTGACTCCACCATCTCCAAGTGAGACCTCTGTTCCATCGTCGCCATCTATCACTGAAACACCTACTTCATCTCCAGCTGAATCTCCCCTACCACCAGTCTATTCCCCTCCTCCACCACCGGTTCATTCCCCACCACCCCCGTCCACTCTCCTCCACCCCCTGTTCATTCACCACCACCCCCGATCTCCTCACCTCCACCTCCTGTTCACTCACCACCACCACCAGTTCACTCTCCACCTCCACCGATTTACTCCCCACCACCCCCTGTCTACTCTCCACCACCTCCTGTCCACTCCCCACCACCACCGGTTCACTCTCCACCACCCCCCGTCCACTCTCCACCACCCCCTGTCTACTCTCCACCACCACCAGTCTATTCTCCACCACCACCTGTCTACTCTCCTCCACCTCCACCTGTTTACTCCCCACCGCCACCAGTTCAATCTCCACCACCTCCGATTGCATCTCCTCCTCCTCCCGATTCTTCACCACCACCGTCATTTGAAGATGTGA ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCCTGCTTTCTTCTTCTTCTTCTTCTTTTCCTCTTTATCTCTCTCCCATCTCTCACTCTCTCTGTCTCCCAAGCCGAAGTTTCATATATTACTCAACGTCAACTATTGACTCTAAAAGAACACGATCAACTCCCCGATGACTTCAAATATGAACTTGACATTCCTGACACTTTTCCAAATGAGAGGTTGAAGAAAGCTTATGTAGCTCTTCAAGCGTGGAAATTAGCTGTTTATTCCGACCCAAAAAACATGACCGTCAATTGGGTTGGCGCCAATGTTTGTTCTTACAACGGTGTCTTCTGTGCTCCAGCGCTTGATGACCCAAAAATTGAGGTTGTGGCTGGCATTGATTTGAATGACGGTGACATTGCAGGGTACTTGCCTCCGGAACTCGGGCTTTTGACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTTTGTGGGATCATTCCTTCTAGTTTCTCAAAGCTTGTACTTATGTTTGAGTTTGATGTCAGCAACAACCGCTTCGTTGGTCACTTTCCACTTGTTGTCCTCGAATGGTCGAGTGCGAAGTACCTCGATCTCAGGTACAATGACTTCGAAGGAGAAATCCCCTCCACACTTTTCACCAACGAGTTTGACGCCATCTTCTTGAACAACAATAGATTCAATTCTTTAATTCCTGAAACCATTGGAAACTCCACCGTCTCTGTTGTCTCCTTCGCCAACAACGAATTCCATGGCTGCATTCCTAGCACCATTGGCCAAATGTCTAACCTCAACCAAATTCTCTTCATCGGTAACAAGCTCAGTGGTTGTTTTCCACCTGAGATCGGAAACCTCGTCAATCTCACAGTCTTTGATGTTAGCAACAATGGCTTCATAGGCCAATTGCCAGAATCATTGTCTGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAACGAACTGAGGGGCTCTGTCTCTGGTGATCTTTGCAAGTTGCCTAAATTGGCTAACTTCACTTTCTCCTTTAATTACTTTGATGGAGAAGATGCGGCATGTGCTACATCTAAAGGATCAGAGAAGCTCTTTGACGATAGTCAAAATTGTTTGGCAAATCGACCTATGCAGAAAGATGCAAACAAATGTAGCACTGTCTTGAAGAAATCAGTGGACTGTGGAAATTGTGGTGGTGGGTCGAGTTCTCCTGGTGTGCCGTCGACCTTTGAGGATCCATACGATCAGTCTCCATCGCCAAGATATAGGTCTCCACCACCTCCAGTTGTGACTCCACCATCTCCAAGTGAGACCTCTGTTCCATCGTCGCCATCTATCACTGAAACACCTACTTCATCTCCAGCTGAATCTCCCCTACCACCAGTCTATTCCCCTCCTCCACCACCGGTTCATTCCCCACCACCCCCGTCCACTCTCCTCCACCCCCTGTTCATTCACCACCACCCCCGATCTCCTCACCTCCACCTCCTGTTCACTCACCACCACCACCAGTTCACTCTCCACCTCCACCGATTTACTCCCCACCACCCCCTGTCTACTCTCCACCACCTCCTGTCCACTCCCCACCACCACCGGTTCACTCTCCACCACCCCCCGTCCACTCTCCACCACCCCCTGTCTACTCTCCACCACCACCAGTCTATTCTCCACCACCACCTGTCTACTCTCCTCCACCTCCACCTGTTTACTCCCCACCGCCACCAGTTCAATCTCCACCACCTCCGATTGCATCTCCTCCTCCTCCCGATTCTTCACCACCACCGTCATTTGAAGATGTGA MASLHRKQANHACFLLLLLLFLFISLPSLTLSVSQAEVSYITQRQLLTLKEHDQLPDDFKYELDIPDTFPNERLKKAYVALQAWKLAVYSDPKNMTVNWVGANVCSYNGVFCAPALDDPKIEVVAGIDLNDGDIAGYLPPELGLLTDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPLVVLEWSSAKYLDLRYNDFEGEIPSTLFTNEFDAIFLNNNRFNSLIPETIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLSGCFPPEIGNLVNLTVFDVSNNGFIGQLPESLSGLQNLEIMDVSNNELRGSVSGDLCKLPKLANFTFSFNYFDGEDAACATSKGSEKLFDDSQNCLANRPMQKDANKCSTVLKKSVDCGNCGGGSSSPGVPSTFEDPYDQSPSPRYRSPPPPVVTPPSPSETSVPSSPSITETPTSSPAESPLPPVYSPPPPPVHSPPPPSTLLHPLFIHHHPRSPHLHLLFTHHHHQFTLHLHRFTPHHPLSTLHHLLSTPHHHRFTLHHPPSTLHHPLSTLHHHQSILHHHLSTLLHLHLFTPHRHQFNLHHLRLHLLLLPILHHHRHLKM
BLAST of CsaV3_6G000730 vs. NCBI nr
Match: XP_011656352.1 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 isoform X1 [Cucumis sativus] >XP_011656353.1 PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 isoform X2 [Cucumis sativus]) HSP 1 Score: 392.1 bits (1006), Expect = 3.4e-105 Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. NCBI nr
Match: KGN45680.1 (hypothetical protein Csa_6G006180 [Cucumis sativus]) HSP 1 Score: 343.6 bits (880), Expect = 1.4e-90 Identity = 377/418 (90.19%), Postives = 388/418 (92.82%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. NCBI nr
Match: XP_011656354.1 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Cucumis sativus]) HSP 1 Score: 343.6 bits (880), Expect = 1.4e-90 Identity = 377/418 (90.19%), Postives = 388/418 (92.82%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. NCBI nr
Match: XP_016902247.1 (PREDICTED: LOW QUALITY PROTEIN: pollen-specific leucine-rich repeat extensin-like protein 3 [Cucumis melo]) HSP 1 Score: 321.2 bits (822), Expect = 7.3e-84 Identity = 384/415 (92.53%), Postives = 394/415 (94.94%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. NCBI nr
Match: XP_016902246.1 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3, partial [Cucumis melo]) HSP 1 Score: 317.8 bits (813), Expect = 8.0e-83 Identity = 356/414 (85.99%), Postives = 374/414 (90.34%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. TAIR10
Match: AT2G15880.1 (Leucine-rich repeat (LRR) family protein) HSP 1 Score: 174.5 bits (441), Expect = 2.0e-43 Identity = 286/385 (74.29%), Postives = 314/385 (81.56%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. TAIR10
Match: AT3G19020.1 (Leucine-rich repeat (LRR) family protein) HSP 1 Score: 173.3 bits (438), Expect = 4.4e-43 Identity = 80/115 (69.57%), Postives = 92/115 (80.00%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. TAIR10
Match: AT4G33970.1 (Leucine-rich repeat (LRR) family protein) HSP 1 Score: 151.4 bits (381), Expect = 1.8e-36 Identity = 68/109 (62.39%), Postives = 85/109 (77.98%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. TAIR10
Match: AT4G18670.1 (Leucine-rich repeat (LRR) family protein) HSP 1 Score: 141.4 bits (355), Expect = 1.9e-33 Identity = 71/116 (61.21%), Postives = 84/116 (72.41%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. TAIR10
Match: AT4G13340.1 (Leucine-rich repeat (LRR) family protein) HSP 1 Score: 140.6 bits (353), Expect = 3.2e-33 Identity = 69/115 (60.00%), Postives = 81/115 (70.43%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. Swiss-Prot
Match: sp|Q9XIL9|PLRX3_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=PEX3 PE=2 SV=1) HSP 1 Score: 174.5 bits (441), Expect = 3.6e-42 Identity = 286/385 (74.29%), Postives = 314/385 (81.56%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. Swiss-Prot
Match: sp|Q9LJ64|PLRX1_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=PEX1 PE=2 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 8.0e-42 Identity = 80/115 (69.57%), Postives = 92/115 (80.00%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. Swiss-Prot
Match: sp|O81765|PLRX4_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=PEX4 PE=2 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 3.3e-35 Identity = 68/109 (62.39%), Postives = 85/109 (77.98%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. Swiss-Prot
Match: sp|Q9SN46|LRX5_ARATH (Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=LRX5 PE=2 SV=2) HSP 1 Score: 141.4 bits (355), Expect = 3.4e-32 Identity = 71/116 (61.21%), Postives = 84/116 (72.41%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. Swiss-Prot
Match: sp|Q9T0K5|LRX3_ARATH (Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=LRX3 PE=1 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 5.8e-32 Identity = 69/115 (60.00%), Postives = 81/115 (70.43%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. TrEMBL
Match: tr|A0A0A0K7H4|A0A0A0K7H4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006180 PE=4 SV=1) HSP 1 Score: 343.6 bits (880), Expect = 9.0e-91 Identity = 377/418 (90.19%), Postives = 388/418 (92.82%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. TrEMBL
Match: tr|A0A1S4E1Z5|A0A1S4E1Z5_CUCME (LOW QUALITY PROTEIN: pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103497703 PE=4 SV=1) HSP 1 Score: 321.2 bits (822), Expect = 4.8e-84 Identity = 384/415 (92.53%), Postives = 394/415 (94.94%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. TrEMBL
Match: tr|A0A1S4E1Z4|A0A1S4E1Z4_CUCME (pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103498004 PE=4 SV=1) HSP 1 Score: 317.8 bits (813), Expect = 5.3e-83 Identity = 356/414 (85.99%), Postives = 374/414 (90.34%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. TrEMBL
Match: tr|A0A1S3C8I6|A0A1S3C8I6_CUCME (pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103498003 PE=4 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 1.2e-79 Identity = 351/382 (91.88%), Postives = 366/382 (95.81%), Query Frame = 0
BLAST of CsaV3_6G000730 vs. TrEMBL
Match: tr|A0A1S4E2P1|A0A1S4E2P1_CUCME (pollen-specific leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC107991605 PE=4 SV=1) HSP 1 Score: 298.5 bits (763), Expect = 3.3e-77 Identity = 352/412 (85.44%), Postives = 370/412 (89.81%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |