CsaV3_6G000110 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G000110
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 75182 .. 76668 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAACGGTTGACCGTTAAAACTAAAAACTCAGTAATGTGTGAGTTGTGACGTGGTAGTGATTGTCACTAGAAAAGTCACGAGATGATGCCACGTGTAAATCAGGTGAAGCCTTGTAGCGTCCATCAGATGAGTTCAGAATCCCTGGATTACACACTACCGCATTGAACCTTAAATTCCCGAAGCTCATCAATCATACTTCGATTTTCAAAAACCCCAAACCTCAAACCCCAAAACCCAAATCCCAAATCTTTCCTCCTTCCCTGCATTTTCCGATCGCAGCTTTGATTCGGGTTCATACTCCTTTTCCCTCTTTGGTTTCTTTTAGTTTGTCAACTAATTCAATTTAGAGATTGTTGATTGTTGACGAGTAAGTGAGTAAGTGATGGAATGAAATTTCGTGTTCTTACTGTAGTGAAGTTCTGATTGTTTTGTTTTTTCTCATATCTTGCACGATGTTTTAGCTCATTTATTGTTTTTTTTTTGTATGGTGTGAAAAGGGTTGGGGTTTGATTTGTTACTCTCTTAGTTGATTACGCGAAATATTTGATGTGTGGCTTCTGAGGGTTGTGATTGGGAACATGACTTGGCTCTGCATGCAGTTTTCATCACTTATGGGGGTTGTTCTTTTGATTTTTGGTTTAATTGCAAATGTAGATTGTAGGGAAATAAAGTTTTCAGATTTATGGTATGTGAGCTTCATTTTTATTTATTTTGGAAGAAACCAAGCTTTCAATGAAAGAAAAAGGGCATGCAAAAAACAAAAAATGCCCTTCGTCAAGGATCATAATTACAAAAAAGTGTTTTAACAGACGCCCCCGTCGCCCACAAAGAGGCATTCTAACCTGCTCATTGGATCTAAGCCGAATACCTTAAACAGTAGCGAAAAAACAAACTTTATTGGCACATGGTATGCGAGCTTCATGTCGTACATACTTAGTGCATGGTCGAGAGTGATTTTGTCAGTTTTAAAGTCACCCCAATACACGTCTTTATTATTCAAATGAAGCTGACGTTTGGCTTTACTCTTTCAAACGATGTTTTCTTACCATAAAAGTTGGTTTTGAAGGATTGAAAACATATTTTAGATTGATTTTGAACCTAACAAGAGTAATTTTAACCATTTCAACATCACAGCTGCAACTTATATCACCCTCCCCCCCCCCCAAAAAAAAAAAAAAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGAGAATTAAAGAAAAGACTGAAGTTAGAATTTAAGTTTTCAGGTCACGTTGAAATCTCGTATTAGAATAAACGGTGATAATGATTACTGATTATTAATGCATTTTACTGTTTTAGACCTGAAAGGCTAGGAGAGCGTCAAGCCTCTAGCCAAGACTCAGAATGCTTCGCCTGCTGCTTTTAGGGTCGTGGTCCAAACATTGTTCAATTTTTTGACCATCAGTGATTATTATTTTACAGAGCCAGAGAAAACTTAGTTTGGTCTCCTGA

mRNA sequence

ATGGAGAAACGGTTGACCGTTAAAACTAAAAACTCACGTCCATCAGATGAGTTCAGAATCCCTGGATTACACACTACCGCATTGAACCTTAAATTCCCGAAGCTCATCAATCATACTTCGATTTTCAAAAACCCCAAACCTCAAACCCCAAAACCCAAATCCCAAATCTTTCCTCCTTCCCTGCATTTTCCGATCGCAGCTTTGATTCGGAGCCAGAGAAAACTTAGTTTGGTCTCCTGA

Coding sequence (CDS)

ATGGAGAAACGGTTGACCGTTAAAACTAAAAACTCACGTCCATCAGATGAGTTCAGAATCCCTGGATTACACACTACCGCATTGAACCTTAAATTCCCGAAGCTCATCAATCATACTTCGATTTTCAAAAACCCCAAACCTCAAACCCCAAAACCCAAATCCCAAATCTTTCCTCCTTCCCTGCATTTTCCGATCGCAGCTTTGATTCGGAGCCAGAGAAAACTTAGTTTGGTCTCCTGA

Protein sequence

MEKRLTVKTKNSRPSDEFRIPGLHTTALNLKFPKLINHTSIFKNPKPQTPKPKSQIFPPSLHFPIAALIRSQRKLSLVS
Homology
[Close]
BLAST of CsaV3_6G000110 vs. NCBI nr
Match: KGN45614.1 (hypothetical protein Csa_6G000135 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 2.9e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MEKRLTVKTKNSRPSDEFRIPGLHTTALNLKFPKLINHTSIFKNPKPQTPKPKSQIFPPS 60
          MEKRLTVKTKNSRPSDEFRIPGLHTTALNLKFPKLINHTSIFKNPKPQTPKPKSQIFPPS
Sbjct: 1  MEKRLTVKTKNSRPSDEFRIPGLHTTALNLKFPKLINHTSIFKNPKPQTPKPKSQIFPPS 60

Query: 61 LHFPIAALIRSQRKLSLVS 80
          LHFPIAALIRSQRKLSLVS
Sbjct: 61 LHFPIAALIRSQRKLSLVS 79

[Close]
BLAST of CsaV3_6G000110 vs. TrEMBL
Match: tr|A0A0A0K9U7|A0A0A0K9U7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G000135 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.9e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MEKRLTVKTKNSRPSDEFRIPGLHTTALNLKFPKLINHTSIFKNPKPQTPKPKSQIFPPS 60
          MEKRLTVKTKNSRPSDEFRIPGLHTTALNLKFPKLINHTSIFKNPKPQTPKPKSQIFPPS
Sbjct: 1  MEKRLTVKTKNSRPSDEFRIPGLHTTALNLKFPKLINHTSIFKNPKPQTPKPKSQIFPPS 60

Query: 61 LHFPIAALIRSQRKLSLVS 80
          LHFPIAALIRSQRKLSLVS
Sbjct: 61 LHFPIAALIRSQRKLSLVS 79

The following BLAST results are available for this feature:
BLAST of CsaV3_6G000110 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45614.12.9e-36100.00hypothetical protein Csa_6G000135 [Cucumis sativus][more]
BLAST of CsaV3_6G000110 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G000110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G000110 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K9U7|A0A0A0K9U7_CUCSA1.9e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G000135 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G000110.1CsaV3_6G000110.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G000110Silver-seed gourdcarcucB0081
CsaV3_6G000110Cucumber (Gy14) v2cgybcucB298
CsaV3_6G000110Cucumber (Gy14) v1cgycucB203
CsaV3_6G000110Cucurbita maxima (Rimu)cmacucB0440
CsaV3_6G000110Cucurbita maxima (Rimu)cmacucB1071
CsaV3_6G000110Cucurbita moschata (Rifu)cmocucB0432
CsaV3_6G000110Cucurbita moschata (Rifu)cmocucB1053
CsaV3_6G000110Cucurbita pepo (Zucchini)cpecucB0165
CsaV3_6G000110Cucurbita pepo (Zucchini)cpecucB0399
CsaV3_6G000110Wild cucumber (PI 183967)cpicucB364
CsaV3_6G000110Bottle gourd (USVL1VR-Ls)cuclsiB418
CsaV3_6G000110Melon (DHL92) v3.5.1cucmeB430
CsaV3_6G000110Melon (DHL92) v3.6.1cucmedB420
CsaV3_6G000110Watermelon (Charleston Gray)cucwcgB502
CsaV3_6G000110Watermelon (97103) v1cucwmB572
CsaV3_6G000110Watermelon (97103) v2cucwmbB492
CsaV3_6G000110Wax gourdcucwgoB552