CsaV3_5G039780 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G039780
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionSplicing factor 3b subunit 4
Locationchr5 : 31394723 .. 31399229 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAGATCCAAAAAATTAAAATTTGATTATCACAAAAACACTTAAAAACTTTGTTTTCTTCTTTAAAAAGGCTATCCTCAATCACACCTACTCGTCTAAGTGCAATTAAATTATCACATCATAGAGGATAATGGATTTGGGAATGAAAGTAAAATATTGCACTATTTTTCAAAAGGATCATTTTATCCGAAACCAAAACATAGGGCCATTTTTCATGTTAAAAAAACTCCTCCACTTCTCTCCTCAACCTTCCGCCCGTCAACCTCCTTCCGATCTCCTGCCTCTCTCTTCTCCGGCCACCATTTCCAAGCACAGATCACGCTACTCCTCCGAAGAACAACCAACAACCAAGCTCCTTCTGATTTACCCGTTCCTGGCGCACCCTACGAAGTGACTCCTCTCCTGAAACCCACGAACGAGCGAAACACTCTAAATTCCTTTCGAACTTAGCCTGTGGTGTTCGGTTTTGTGAAATTGAACACAATTAAAGAACTTCTGGCTTCCTTTTTTGGTAAGTTTTAAGTGAGTAAACACTCTAAATTTCTTTCGAACTTCAATAGAGTGGTTTAGAATTATCCCCAACACTTCGAAAAATCTTGTTTGTAGAGACTGCGATTTACTGATTTGATGAACTTTTTTGAAATACTAATGGGGAATATAGTTGAAATGCAAACCACAATGGGAGAATCGAAATCGAAGCGATACTAAATAAAGGTTTATTGGGTTACTTTTTCTTATCTTTCCTTTTTGCTGCTGAACTTGCAGAGTAATCATGTCAGGAAGGTCAAATGGATGCACCATTTACATTGGTAAGTTTGTTATTATCTGTATCTAACTATCTTAATTCATGTTCTTTGTACTCTAATTTGTTTTTCTTTCATGAGGATTCTGTTTGCGGGTTAAGCTCCATGTTTTTACTTCTGTGAAGCTTCTAGTGAAAATTATGATCTTGAGTGGTTGGTTTTATAATAGTTGTGTTTATTTCTTTCTATTATGATTTGCTATTGGATGTATATGACACATGGCATTTGACATGTTTGTTGCTTCTCTCACACTATTGGATTTCTTCCTCTCCAACCTTTTCCTCTTTTGTAAATATGTTTGATTTCTCTTTATATCATTATTGATTTGGTGCCTTTGGTGAAGAGAGTTGATAGTTAACTTCTTTTTGTTTTTCATTGATCTCTTAGATTTTCTTCATTTTTGCTTTAATTGGTACAATCTAAAATTTTCACTTTCACCATCGTCTTTGATCTGCTTCTATGTGGGCTTTACCTATTTGAGTATTGCCGCCAGTTTGTCTGTAATATTTCTCTAACATAACTGGTTGTTCGGTGAACTTAATTTTTTGGGAAAATTTTCTTCCCCGTTTGTACTTGATACAATGTTATCTATTAAGTTTTAAGGATGCAGTCTACTTGAATTTTAGATGCCACATATTTATCTGAATTTGATTTTGTTACTTTCTTCACATTTTTTAGGTAATTTGGATGAAAAAGTAAGTGACAGGGTTCTTTACGACATTCTAATCCAAGCTGGACGGGTTGTGGACTTGCACATTCCTCGAGACAAGGAATCTGGCAAGCCTAAGGGTTTTGCTTTTGCAGAGTATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAAACGTACCTTGAAGTTTGCAGTATGTCATTTTTATTTCCTTCTCAACTAAATTTTTTCATTTTATCTCCATGTTTCTTGATGAACTTTGTATTCTATTCGAACGTGTACGTTTGCATGCATATATATTTGCTTTATGATCCAGTATCATGTTGTACACCATCTCCTCTAATTTGATCCATTTTGCTCAGTAACTCAGGTTTTGATCTATATAGTGTCTATTAAAATGTGAGGTGCATTTGAAATTTTTTACCTTTTGTTTTATCTTTAATTAAAAAACCAAGCCTACAAAAAGAGGAAGCTCCCCCTACAAAGAGAGATAGACTAAAATCTCAATCTATAGATGCTTTCCTTTTGATACATTATCGTTTACTGGCAGCTCATTCCAATTTTATAATCAGATAATTGTGTAATCTTCTTGTAGCATCTATGATTGTGAATTGTTTAGTGGGGTACTAAGTTATGGAAATGACACATTGTTTTTGACATTGTGCGAGCAGGTATCTGGGCAAGACAAGCCTTCACCTGGTAGCAATGCAATCACTTCATCATCGAGGTCGCATGAAATATCTCAGTATTCCAATCGCTTTTCCCCATCTTGCAGGTTTCCAACATATCCTGAGAACCATCTTGAAGGTGATTTTTCTTACTTTTCTTTATTTTTGTCTTTGTGTTAGTTTGCTAAAAAATTGTGTGTTTGTACTTTATTGGCCTTTTTCCACATAGCTCAACAAACTTTTATTTCTTTTATTCAGCTCTTCTTAACCCTGGTTTAGTTAACCAATTTAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAAATTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGATTCGAGTTTTCCTGTAGATTATCCTCCTTACTAACTTTTGAACTAATGCAGCCAGTGCCGTCCATTGTGGTTAATCTTAATGATAATATAAGTGTTAGGAAAAGTTGGACCTCTTAGATGGTTGTAGATGGTTTGGAGGAAAATGATGCGATATTTGGCTATTTGCTACGGTGCCTGCTAGCTTATGTTATTGAATACGTTGTCATTTTGCCAGGATTATGTGTTCATATGATTTGGCTATGTTGTTGTAAACTTATAGTTGATACCCTAACTAAGTATTGTAACCTATTTGATTAAATATTCAGATTTTCTATAATTCATGTTTAATGTTATTATAAACGATATTTCCAAGGTGACTGAAAAAGTTTGTGTATGTTGAGTCTTTACTTTCTTCTGAAGTGTTTTACTTGAGCCAATATATAAATACCATTTAGCATTTTGGTTTTAGCAAAGTGAAAGCTAATATTACATGTAAAACCAGGCATTTTGGTTTGCCATTTCTGCGTTTGGGTATGCCTGTAGGCTGTACTGAAATTCTTGGAAGGTTAAGTCGTATGTTATTGTCCAACTTTGCATTTTTTAGACCTAGTTGATTTCATTACGTTTAGTTTACCTCTAATTTTTAATAATCTAAAAATTCAAGAATCTAAAATACCCTTTCTTATTTGGGCTCAAAGTTCATATTTGGAAATTGGAATTGTGAGTACAAGTGTAGTACAACAAGAGAGAATGAGAATGAGGATTTGAACCTCTAACCTCAAGGAAATGATACAACTCAATTACCATAGAGCTATATTTACTTTCCCATTAGTTTTACTATTCTTTCTATTGTAATATGAATTTGTTCGTTTTCTTTTATTCTGCCTTTGTATTGGTGTTGTGAGACCTGTTTTTGATGTTTGTTGTTGTGTATGATAAACGACCTATCTTCGATTGCTTTGTAAGATTTGGGATAAGTTGATATAGTCAGTTTTAGTAAGCAAGTAGTGTTTCTAACTGAAATGCTTTTGTATGAAGCACGAGTGGAGAACAGTACATCTATTAAGTGCTTTGTTCAAAAGGGTGTGTTGTAGTACAGAAATTAAATCAGAATGAAAAGAGTGGTATCGTACTGGATGGGATGAAGGCTCTCACTATCTCTGGCTGTATAGGTTAAAATACTACGGTACACAAGTTTACTTGTATGAAATACATATGTGATGTCATTGTTAATTATTATAGTTAATGAGATAATTATTAGTGTTTGGAGTGAGTTTGTGTTAAAAAATAAAATGAGAGGATGAGTGAAAATAGTAAATACGGTAACATATATGGTCTTAGTTTTATTTAATATATTTAATCGTAGGATATAAGTAGTTGCACACTTCACTTTTATATGTGGTGCTCTAAGTAAGGTGTAGGCTTTGAAACCAACTTCTATTAGCATAAGCATATGCGGTTTGTTCCTTGAAGAAGATCACTTTTGTGCCATCTTCCATGTAATTCTCTTAGGATTGTTTAACAATCCGACTTCAACGGTAGCAACAGGAGCCGTTTATTAAATAACGAAGAAAATCTCGAGCTCATATCGGTCATGAGTATGAGTTCAAGAAGCTTGGGCATAGAAGAAGATTTTATAAAGCTGTGTTTTCGTATGTTGGTAATGTTGTACGATGGTCGCTAAATATAGTTGGAATTAGTTAAATATTTGTTATTTTTCTTTTTCATTCAAGTTATGATGGAAACTTTGTTCCATTATTACTTAATTTTTCTAATTTATGTTTGTTTACTTGCAATAGTCTACATTTTATAGTTGACATCTAGAGCCTATATTTAGTAGGAAAGCTAAAATTAAAATTTAAAATCAACGTATCAAATGAAAAAAAAGTTTTATTTTATGTTTTTAAATATGTGTATGGTAGTAAATTTATAAATTGGATTCTAATTTCAACCATAAGTATAAAAG

mRNA sequence

ATGTCAGGAAGGTCAAATGGATGCACCATTTACATTGGTAATTTGGATGAAAAAGTAAGTGACAGGGTTCTTTACGACATTCTAATCCAAGCTGGACGGGTTGTGGACTTGCACATTCCTCGAGACAAGGAATCTGGCAAGCCTAAGGGTTTTGCTTTTGCAGAGTATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAAACGTACCTTGAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCTGGTAGCAATGCAATCACTTCATCATCGAGGTCGCATGAAATATCTCAGTATTCCAATCGCTTTTCCCCATCTTGCAGGTTTCCAACATATCCTGAGAACCATCTTGAAGCTCTTCTTAACCCTGGTTTAGTTAACCAATTTAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAAATTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGATTCGAGTTTTCCTGTAGATTATCCTCCTTACTAA

Coding sequence (CDS)

ATGTCAGGAAGGTCAAATGGATGCACCATTTACATTGGTAATTTGGATGAAAAAGTAAGTGACAGGGTTCTTTACGACATTCTAATCCAAGCTGGACGGGTTGTGGACTTGCACATTCCTCGAGACAAGGAATCTGGCAAGCCTAAGGGTTTTGCTTTTGCAGAGTATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAAACGTACCTTGAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCTGGTAGCAATGCAATCACTTCATCATCGAGGTCGCATGAAATATCTCAGTATTCCAATCGCTTTTCCCCATCTTGCAGGTTTCCAACATATCCTGAGAACCATCTTGAAGCTCTTCTTAACCCTGGTTTAGTTAACCAATTTAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAAATTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGATTCGAGTTTTCCTGTAGATTATCCTCCTTACTAA

Protein sequence

MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY
Homology
[Close]
BLAST of CsaV3_5G039780 vs. NCBI nr
Match: XP_011656074.1 (PREDICTED: RNA-binding protein 7-like [Cucumis sativus])

HSP 1 Score: 347.4 bits (890), Expect = 2.9e-92
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120

Query: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXHDSSFPVD 180
           TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXHDSSFPVD
Sbjct: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXHDSSFPVD 180

Query: 181 YPPY 185
           YPPY
Sbjct: 181 YPPY 184

[Close]
BLAST of CsaV3_5G039780 vs. NCBI nr
Match: KGN52646.1 (hypothetical protein Csa_5G648670 [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 3.3e-88
Identity = 176/179 (98.32%), Postives = 177/179 (98.88%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120

Query: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXHDSSFPV 180
           TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSG XXXXXXXXXXX HDSSFP+
Sbjct: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTXXXXXXXXXXXRHDSSFPM 179

[Close]
BLAST of CsaV3_5G039780 vs. NCBI nr
Match: XP_008459559.1 (PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo] >XP_008459560.1 PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo])

HSP 1 Score: 327.4 bits (838), Expect = 3.1e-86
Identity = 178/191 (93.19%), Postives = 181/191 (94.76%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSR-------SHEISQYSNRF 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSSR       S+EISQYSNRF
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYSNRF 120

Query: 121 SPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXH 180
           S SCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXH
Sbjct: 121 SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXH 180

Query: 181 DSSFPVDYPPY 185
           DSSFPVDYPPY
Sbjct: 181 DSSFPVDYPPY 191

[Close]
BLAST of CsaV3_5G039780 vs. NCBI nr
Match: XP_008459561.1 (PREDICTED: RNA-binding protein 7-like isoform X3 [Cucumis melo] >XP_008459562.1 PREDICTED: RNA-binding protein 7-like isoform X3 [Cucumis melo])

HSP 1 Score: 297.4 bits (760), Expect = 3.5e-77
Identity = 164/184 (89.13%), Postives = 166/184 (90.22%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSS                RFP
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSS----------------RFP 120

Query: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXHDSSFPVD 180
           TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXHDSSFPVD
Sbjct: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXHDSSFPVD 168

Query: 181 YPPY 185
           YPPY
Sbjct: 181 YPPY 168

[Close]
BLAST of CsaV3_5G039780 vs. NCBI nr
Match: XP_022973396.1 (RNA-binding protein 7-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 275.8 bits (704), Expect = 1.1e-70
Identity = 141/197 (71.57%), Postives = 154/197 (78.17%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIYIGNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSR-------------SHEIS 120
           I NYAVKLFSGLV LH RTLKFAVSGQDKPSP S+AITSSS              S+EIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QYSNRFSPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXX 180
            YSNR S SCRF  YPENHLEA   PGLVNQ NGYGS+ D++N +YSQRYSG        
Sbjct: 121 SYSNRLSNSCRFSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

Query: 181 XXXXXHDSSFPVDYPPY 185
                HD+S+PV YPPY
Sbjct: 181 PKSRRHDTSYPVYYPPY 197

[Close]
BLAST of CsaV3_5G039780 vs. TAIR10
Match: AT4G10110.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 155.6 bits (392), Expect = 3.0e-38
Identity = 94/177 (53.11%), Postives = 117/177 (66.10%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG SN CT+YIGN+DE+VSDRVLYDI+IQAGRV+DLHIPRDKE+ KPKGFAFAEYE+EE
Sbjct: 1   MSGTSN-CTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDK-----------PSPGSNAITSSSRS--HEIS 120
           IA+YAVKLFSGLV+L+ RTLKFA+SGQDK             P S A   S R+  H + 
Sbjct: 61  IADYAVKLFSGLVSLYNRTLKFAISGQDKLQSNSANSGHRARPQSLAFEHSDRAAYHHLE 120

Query: 121 QYSNR-FSPSCRFPTYPENHLEALLNPGLVN------QFNGYGSHLDNYNKEYSQRY 158
           ++S++  SP    P    ++ +    PG+ N           GS LD+ N    +RY
Sbjct: 121 RFSSQLISPPSPLPL---DYTQEPPPPGVSNGASLEYSRRVLGSALDSINHSRPRRY 173

[Close]
BLAST of CsaV3_5G039780 vs. TAIR10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-14
Identity = 31/88 (35.23%), Postives = 61/88 (69.32%), Query Frame = 0 

Query: 4   RSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
           R+   T+Y+G LD ++S+ +L+++ +QAG VV++++P+D+ +   + + F EY SEE A+
Sbjct: 21  RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80

Query: 64  YAVKLFSGLVNLHKRTLKFAVSGQDKPS 92
           YA+K+ + ++ LH + ++   + QDK S
Sbjct: 81  YAIKVLN-MIKLHGKPIRVNKASQDKKS 107

[Close]
BLAST of CsaV3_5G039780 vs. TAIR10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 52.0 bits (123), Expect = 4.6e-07
Identity = 22/62 (35.48%), Postives = 35/62 (56.45%), Query Frame = 0 

Query: 10  IYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLF 69
           +Y+GNL   V D  L  +  + G+VV+  +  D++SG+ KGF F  Y+S +    A+K  
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265

Query: 70  SG 72
            G
Sbjct: 266 DG 267

[Close]
BLAST of CsaV3_5G039780 vs. TAIR10
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 51.2 bits (121), Expect = 7.8e-07
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 0 

Query: 6   NGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYA 65
           N   +Y+G +   +++  L  +  Q G +VD+++ RDK +GK KGFAF  YE +     A
Sbjct: 34  NSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILA 93

Query: 66  VKLFSGLVNLHKRTLK 82
           V   +G + L  RT+K
Sbjct: 94  VDNLNGALVL-GRTIK 108

[Close]
BLAST of CsaV3_5G039780 vs. TAIR10
Match: AT5G64200.1 (ortholog of human splicing factor SC35)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-06
Identity = 27/83 (32.53%), Postives = 51/83 (61.45%), Query Frame = 0 

Query: 5  SNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANY 64
          S+  ++ + N+  + +   LY +  + G+VVD+ IPRD+ +G  +GFAF  Y+ ++ A+ 
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72

Query: 65 AVKLFSG-LVNLHKRTLKFAVSG 87
          AV+   G +V+  + T++FA  G
Sbjct: 73 AVERLDGRVVDGREITVQFAKYG 95

[Close]
BLAST of CsaV3_5G039780 vs. Swiss-Prot
Match: sp|Q15427|SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-13
Identity = 32/81 (39.51%), Postives = 61/81 (75.31%), Query Frame = 0 

Query: 1  MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+Y+G LDEKVS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHKRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]
BLAST of CsaV3_5G039780 vs. Swiss-Prot
Match: sp|Q8QZY9|SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-13
Identity = 32/81 (39.51%), Postives = 61/81 (75.31%), Query Frame = 0 

Query: 1  MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+Y+G LDEKVS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHKRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]
BLAST of CsaV3_5G039780 vs. Swiss-Prot
Match: sp|Q6AYL5|SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-13
Identity = 32/81 (39.51%), Postives = 61/81 (75.31%), Query Frame = 0 

Query: 1  MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+Y+G LDEKVS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHKRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]
BLAST of CsaV3_5G039780 vs. Swiss-Prot
Match: sp|Q09442|SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 9.2e-13
Identity = 31/78 (39.74%), Postives = 57/78 (73.08%), Query Frame = 0 

Query: 4  RSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   TIY+G LDEKVS+ +L+++++QAG VV +++P+D+ +   +GF F E+  EE A+
Sbjct: 9  RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68

Query: 64 YAVKLFSGLVNLHKRTLK 82
          YA+K+ + ++ L+ + +K
Sbjct: 69 YAIKILN-MIKLYGKPIK 85

[Close]
BLAST of CsaV3_5G039780 vs. Swiss-Prot
Match: sp|O14102|SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-12
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 0 

Query: 4  RSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   TIY+GNLDEKV+D +L+++ +QAG VV++HIPRD+      GF F E+  E+   
Sbjct: 7  RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66

Query: 64 YAVKLFSGLVNLHKRTLKFAVSGQDK 90
          YA ++ +  V L  + ++   + QD+
Sbjct: 67 YACQILN-QVKLFGKPIRVNRASQDR 91

[Close]
BLAST of CsaV3_5G039780 vs. TrEMBL
Match: tr|A0A0A0KXV1|A0A0A0KXV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 2.2e-88
Identity = 176/179 (98.32%), Postives = 177/179 (98.88%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120

Query: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXHDSSFPV 180
           TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSG XXXXXXXXXXX HDSSFP+
Sbjct: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTXXXXXXXXXXXRHDSSFPM 179

[Close]
BLAST of CsaV3_5G039780 vs. TrEMBL
Match: tr|A0A1S3CAZ4|A0A1S3CAZ4_CUCME (RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 2.1e-86
Identity = 178/191 (93.19%), Postives = 181/191 (94.76%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSR-------SHEISQYSNRF 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSSR       S+EISQYSNRF
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYSNRF 120

Query: 121 SPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXH 180
           S SCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXH
Sbjct: 121 SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXH 180

Query: 181 DSSFPVDYPPY 185
           DSSFPVDYPPY
Sbjct: 181 DSSFPVDYPPY 191

[Close]
BLAST of CsaV3_5G039780 vs. TrEMBL
Match: tr|A0A1S3CAK8|A0A1S3CAK8_CUCME (RNA-binding protein 7-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 2.3e-77
Identity = 164/184 (89.13%), Postives = 166/184 (90.22%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSS                RFP
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSS----------------RFP 120

Query: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXHDSSFPVD 180
           TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXHDSSFPVD
Sbjct: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXXXXHDSSFPVD 168

Query: 181 YPPY 185
           YPPY
Sbjct: 181 YPPY 168

[Close]
BLAST of CsaV3_5G039780 vs. TrEMBL
Match: tr|A0A1S3CBQ3|A0A1S3CBQ3_CUCME (RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498659 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 3.4e-65
Identity = 136/194 (70.10%), Postives = 151/194 (77.84%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG SN CT+Y+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDK+SG PKGFAFA YESEE
Sbjct: 1   MSGGSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGIPKGFAFAVYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSS------SRSH----EISQYS 120
           IANYAVKLFSGLV+LH R LKFAVSGQDK SP ++A+TSS      SRSH    EISQYS
Sbjct: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAVTSSSNVSHKSRSHGYSNEISQYS 120

Query: 121 NRFSPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGXXXXXXXXXXX 180
           N  S SCR  TYPENH++ALL  GLVNQ+NGY SH+DNYNKEYSQRY G           
Sbjct: 121 NHPSTSCR--TYPENHVQALLYLGLVNQYNGYASHMDNYNKEYSQRYGGTTLDSFKQPKS 180

Query: 181 XXHDSSFPVDYPPY 185
             + +S+PV YP Y
Sbjct: 181 RRNVTSYPVYYPSY 192

[Close]
BLAST of CsaV3_5G039780 vs. TrEMBL
Match: tr|A0A1S4E2I0|A0A1S4E2I0_CUCME (RNA-binding protein 7-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 8.8e-61
Identity = 123/137 (89.78%), Postives = 126/137 (91.97%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSR-------SHEISQYSNRF 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSSR       S+EISQYSNRF
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYSNRF 120

Query: 121 SPSCRFPTYPENHLEAL 131
           S SCRFPTYPENHLE L
Sbjct: 121 SSSCRFPTYPENHLEEL 137

The following BLAST results are available for this feature:
BLAST of CsaV3_5G039780 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011656074.12.9e-92100.00PREDICTED: RNA-binding protein 7-like [Cucumis sativus][more]
KGN52646.13.3e-8898.32hypothetical protein Csa_5G648670 [Cucumis sativus][more]
XP_008459559.13.1e-8693.19PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo] >XP_008459560.1 ... [more]
XP_008459561.13.5e-7789.13PREDICTED: RNA-binding protein 7-like isoform X3 [Cucumis melo] >XP_008459562.1 ... [more]
XP_022973396.11.1e-7071.57RNA-binding protein 7-like isoform X1 [Cucurbita maxima][more]
BLAST of CsaV3_5G039780 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G10110.13.0e-3853.11RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G18510.13.0e-1435.23RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G37220.14.6e-0735.48RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G47120.17.8e-0735.53RNA recognition motif (RRM)-containing protein[more]
AT5G64200.11.0e-0632.53ortholog of human splicing factor SC35[more]
BLAST of CsaV3_5G039780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q15427|SF3B4_HUMAN1.8e-1339.51Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1[more]
sp|Q8QZY9|SF3B4_MOUSE1.8e-1339.51Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1[more]
sp|Q6AYL5|SF3B4_RAT1.8e-1339.51Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1[more]
sp|Q09442|SF3B4_CAEEL9.2e-1339.74Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV... [more]
sp|O14102|SAP49_SCHPO2.7e-1239.53Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC... [more]
BLAST of CsaV3_5G039780 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KXV1|A0A0A0KXV1_CUCSA2.2e-8898.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1[more]
tr|A0A1S3CAZ4|A0A1S3CAZ4_CUCME2.1e-8693.19RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE... [more]
tr|A0A1S3CAK8|A0A1S3CAK8_CUCME2.3e-7789.13RNA-binding protein 7-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498657 PE... [more]
tr|A0A1S3CBQ3|A0A1S3CBQ3_CUCME3.4e-6570.10RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498659 PE... [more]
tr|A0A1S4E2I0|A0A1S4E2I0_CUCME8.8e-6189.78RNA-binding protein 7-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498657 PE... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G039780.1CsaV3_5G039780.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 9..83
e-value: 9.4E-17
score: 71.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 10..80
e-value: 2.7E-14
score: 52.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 8..87
score: 14.709
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 2..92
e-value: 5.8E-20
score: 73.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..184
NoneNo IPR availablePANTHERPTHR45284FAMILY NOT NAMEDcoord: 1..180
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 6..79

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G039780Silver-seed gourdcarcucB0190
CsaV3_5G039780Silver-seed gourdcarcucB0712
CsaV3_5G039780Cucumber (Gy14) v2cgybcucB232
CsaV3_5G039780Cucumber (Gy14) v1cgycucB357
CsaV3_5G039780Cucurbita maxima (Rimu)cmacucB0036
CsaV3_5G039780Cucurbita maxima (Rimu)cmacucB0576
CsaV3_5G039780Cucurbita moschata (Rifu)cmocucB0024
CsaV3_5G039780Cucurbita moschata (Rifu)cmocucB0565
CsaV3_5G039780Cucurbita pepo (Zucchini)cpecucB0717
CsaV3_5G039780Cucurbita pepo (Zucchini)cpecucB0980
CsaV3_5G039780Wild cucumber (PI 183967)cpicucB284
CsaV3_5G039780Bottle gourd (USVL1VR-Ls)cuclsiB414
CsaV3_5G039780Bottle gourd (USVL1VR-Ls)cuclsiB415
CsaV3_5G039780Melon (DHL92) v3.5.1cucmeB358
CsaV3_5G039780Melon (DHL92) v3.6.1cucmedB350
CsaV3_5G039780Watermelon (Charleston Gray)cucwcgB433
CsaV3_5G039780Watermelon (Charleston Gray)cucwcgB435
CsaV3_5G039780Watermelon (Charleston Gray)cucwcgB436
CsaV3_5G039780Watermelon (97103) v1cucwmB402
CsaV3_5G039780Watermelon (97103) v1cucwmB405
CsaV3_5G039780Watermelon (97103) v2cucwmbB420
CsaV3_5G039780Watermelon (97103) v2cucwmbB422
CsaV3_5G039780Wax gourdcucwgoB474