CsaV3_5G039110 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G039110
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionSugar carrier protein c
Locationchr5 : 30900420 .. 30900893 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCAACGCATTCGTGGTGTGTCTGAGAAGGAAGTAGAGATGGAGTTTCGAGATATTGTGGCGGCAAGTATGGCTGATAAGGCAGTGAAAACATCCATGGAGGAATTTGAGTCTGAGACAAAATAGACCGTCAATGGTAATGTTGATTTTGATACCATTTTTCAGCAATATAATTGACTGGTATCAATGTGATCATGTTCTATGCTAGCTCCTGCGTGTTGTTCAAGACCATTGGTTTTGGAGACAATGCTTCTCTTCTTTTATCTGTTATTACTGGTGGTATTAATGCTCTTGCAACTTCGGTATCTGTTTATGCCACTGATGGCTGTGTTTATTGCTTGGAAATTTGGGGTATCTGGTGAGATTACTTATCTACCAAAATGGCATGCTGGTGTTGTGGTGTTGTGGTGTTGTTCATCTGCATTTATATTCAAGCCTTTGCATGGTCTTGGAGACCTTTGGGATGGTTAG

mRNA sequence

ATGCTCCAACGCATTCGTGGTGTGTCTGAGAAGGAAGTAGAGATGGAGTTTCGAGATATTGTGGCGGCAAGTATGGCTGATAAGGCAGTGAAAACATCCATGGAGGAATTTGAACCATTGGTTTTGGAGACAATGCTTCTCTTCTTTTATCTGTTATTACTGGTGGTATTAATGCTCTTGCAACTTCGGTATCTGTTTATGCCACTGATGGCTGTGTTTATTGCTTGGAAATTTGGGGTATCTGGTGAGATTACTTATCTACCAAAATGGCATGCTGGTGTTGTGGTGTTGTGGTGTTGTTCATCTGCATTTATATTCAAGCCTTTGCATGGTCTTGGAGACCTTTGGGATGGTTAG

Coding sequence (CDS)

ATGCTCCAACGCATTCGTGGTGTGTCTGAGAAGGAAGTAGAGATGGAGTTTCGAGATATTGTGGCGGCAAGTATGGCTGATAAGGCAGTGAAAACATCCATGGAGGAATTTGAACCATTGGTTTTGGAGACAATGCTTCTCTTCTTTTATCTGTTATTACTGGTGGTATTAATGCTCTTGCAACTTCGGTATCTGTTTATGCCACTGATGGCTGTGTTTATTGCTTGGAAATTTGGGGTATCTGGTGAGATTACTTATCTACCAAAATGGCATGCTGGTGTTGTGGTGTTGTGGTGTTGTTCATCTGCATTTATATTCAAGCCTTTGCATGGTCTTGGAGACCTTTGGGATGGTTAG

Protein sequence

MLQRIRGVSEKEVEMEFRDIVAASMADKAVKTSMEEFEPLVLETMLLFFYLLLLVVLMLLQLRYLFMPLMAVFIAWKFGVSGEITYLPKWHAGVVVLWCCSSAFIFKPLHGLGDLWDG
Homology
[Close]
BLAST of CsaV3_5G039110 vs. NCBI nr
Match: KGN52570.1 (hypothetical protein Csa_5G643980 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 3.0e-50
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MLQRIRGVSEKEVEMEFRDIVAASMADKAVKTSMEEFEPLVLETMXXXXXXXXXXXXXXX 60
           MLQRIRGVSEKEVEMEFRDIVAASMADKAVKTSMEEFEPLVLETMXXXXXXXXXXXXXXX
Sbjct: 1   MLQRIRGVSEKEVEMEFRDIVAASMADKAVKTSMEEFEPLVLETMXXXXXXXXXXXXXXX 60

Query: 61  QLRYLFMPLMAVFIAWKFGVSGEITYLPKWHAGVVVLWCCSSAFIFKPLHGLGDLWDG 119
           QLRYLFMPLMAVFIAWKFGVSGEITYLPKWHAGVVVLWCCSSAFIFKPLHGLGDLWDG
Sbjct: 61  QLRYLFMPLMAVFIAWKFGVSGEITYLPKWHAGVVVLWCCSSAFIFKPLHGLGDLWDG 118

[Close]
BLAST of CsaV3_5G039110 vs. NCBI nr
Match: POE66846.1 (sugar carrier protein c [Quercus suber])

HSP 1 Score: 69.3 bits (168), Expect = 9.9e-09
Identity = 42/121 (34.71%), Postives = 62/121 (51.24%), Query Frame = 0 

Query: 1   MLQRIRGVSEKEVEMEFRDIVAASMADKAV-KTSMEEFEPL--------------VLETM 60
           +L+RIRGVS+KE+E +F+D+VAAS   K + KT   +   L              ++ T 
Sbjct: 87  ILKRIRGVSDKEIEAKFKDLVAASETSKVLFKTGFGDDASLLSALITGGINCFATLVSTY 146

Query: 61  XXXXXXXXXXXXXXXQLRYLFMPLMAVFIAWKFGVSGEITYLPKWHAGVVVLWCCSSAFI 107
                            R +F  L+ +FI WKFGV+G++  LPKW AG+VV + C+    
Sbjct: 147 GTDRWGRRFLFLEGGIQRLIFQVLVTIFIGWKFGVTGQVVDLPKWFAGLVVFYICAYVAA 206

[Close]
BLAST of CsaV3_5G039110 vs. NCBI nr
Match: KGN48175.1 (hypothetical protein Csa_6G446360 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 50/157 (31.85%), Postives = 69/157 (43.95%), Query Frame = 0 

Query: 1   MLQRIRGVSEKEVEMEFRDIVAASMADKAVK----------------------------- 60
           ML+RIRGVSE +V+ EF+D+VAASMA KAVK                             
Sbjct: 160 MLKRIRGVSENDVDAEFQDMVAASMAAKAVKHPWRNLRERQNRPPLVMSILIPYFQQLTG 219

Query: 61  -TSMEEFEPLVLETMXXXXXXXXXXXXXXXQLR--------------------------- 101
             ++  + P++ +T+                +                            
Sbjct: 220 INAVMFYAPVLFKTIGFGDNASLLSSVITGGINVLATYVSIYGADKWGRRILFLLGGIIM 279

[Close]
BLAST of CsaV3_5G039110 vs. NCBI nr
Match: XP_022151700.1 (sugar transport protein 12-like [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 52/157 (33.12%), Postives = 70/157 (44.59%), Query Frame = 0 

Query: 1   MLQRIRGVSEKEVEMEFRDIVAASMADKAVK---TSMEE--------------------- 60
           MLQRI GVS K+V+ EF+DIVAAS+A KAV     ++ E                     
Sbjct: 245 MLQRICGVSSKDVDAEFQDIVAASIAAKAVTHPWRNLRERQNRPQLVMSVLIPFFQQLTG 304

Query: 61  ------FEPLVLETM---------------------------XXXXXXXXXXXXXXXQLR 101
                 + P++ +T+                                           + 
Sbjct: 305 INVVMFYAPVLFKTIGFGDNASLLSSVITGGINVLATFVSMYGTDKWGRRILFLLGGTIM 364

[Close]
BLAST of CsaV3_5G039110 vs. NCBI nr
Match: XP_022133730.1 (sugar carrier protein C-like [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 52/157 (33.12%), Postives = 69/157 (43.95%), Query Frame = 0 

Query: 1   MLQRIRGVSEKEVEMEFRDIVAASMADKAVK---TSMEE--------------------- 60
           MLQRIRGVS  EV+ EF+DIV AS+A KAV     ++ E                     
Sbjct: 245 MLQRIRGVSLNEVDAEFQDIVVASIAAKAVTHPWRNLRERQNRPQLVMSILIPFFQQLTG 304

Query: 61  ------FEPLVLETM---------------------------XXXXXXXXXXXXXXXQLR 101
                 + P++ +T+                                           + 
Sbjct: 305 INVVMFYAPVLFKTIGFGDNASLLSSVITGGINVLATFVSLYGTDKWGRRILFLLGGTIM 364

[Close]
BLAST of CsaV3_5G039110 vs. TrEMBL
Match: tr|A0A0A0KSK7|A0A0A0KSK7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643980 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.0e-50
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MLQRIRGVSEKEVEMEFRDIVAASMADKAVKTSMEEFEPLVLETMXXXXXXXXXXXXXXX 60
           MLQRIRGVSEKEVEMEFRDIVAASMADKAVKTSMEEFEPLVLETMXXXXXXXXXXXXXXX
Sbjct: 1   MLQRIRGVSEKEVEMEFRDIVAASMADKAVKTSMEEFEPLVLETMXXXXXXXXXXXXXXX 60

Query: 61  QLRYLFMPLMAVFIAWKFGVSGEITYLPKWHAGVVVLWCCSSAFIFKPLHGLGDLWDG 119
           QLRYLFMPLMAVFIAWKFGVSGEITYLPKWHAGVVVLWCCSSAFIFKPLHGLGDLWDG
Sbjct: 61  QLRYLFMPLMAVFIAWKFGVSGEITYLPKWHAGVVVLWCCSSAFIFKPLHGLGDLWDG 118

[Close]
BLAST of CsaV3_5G039110 vs. TrEMBL
Match: tr|A0A2P4IEA0|A0A2P4IEA0_QUESU (Sugar carrier protein c OS=Quercus suber OX=58331 GN=CFP56_52689 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.5e-09
Identity = 42/121 (34.71%), Postives = 62/121 (51.24%), Query Frame = 0 

Query: 1   MLQRIRGVSEKEVEMEFRDIVAASMADKAV-KTSMEEFEPL--------------VLETM 60
           +L+RIRGVS+KE+E +F+D+VAAS   K + KT   +   L              ++ T 
Sbjct: 87  ILKRIRGVSDKEIEAKFKDLVAASETSKVLFKTGFGDDASLLSALITGGINCFATLVSTY 146

Query: 61  XXXXXXXXXXXXXXXQLRYLFMPLMAVFIAWKFGVSGEITYLPKWHAGVVVLWCCSSAFI 107
                            R +F  L+ +FI WKFGV+G++  LPKW AG+VV + C+    
Sbjct: 147 GTDRWGRRFLFLEGGIQRLIFQVLVTIFIGWKFGVTGQVVDLPKWFAGLVVFYICAYVAA 206

[Close]
BLAST of CsaV3_5G039110 vs. TrEMBL
Match: tr|A0A0A0KEQ3|A0A0A0KEQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446360 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.5e-09
Identity = 50/157 (31.85%), Postives = 69/157 (43.95%), Query Frame = 0 

Query: 1   MLQRIRGVSEKEVEMEFRDIVAASMADKAVK----------------------------- 60
           ML+RIRGVSE +V+ EF+D+VAASMA KAVK                             
Sbjct: 160 MLKRIRGVSENDVDAEFQDMVAASMAAKAVKHPWRNLRERQNRPPLVMSILIPYFQQLTG 219

Query: 61  -TSMEEFEPLVLETMXXXXXXXXXXXXXXXQLR--------------------------- 101
             ++  + P++ +T+                +                            
Sbjct: 220 INAVMFYAPVLFKTIGFGDNASLLSSVITGGINVLATYVSIYGADKWGRRILFLLGGIIM 279

[Close]
BLAST of CsaV3_5G039110 vs. TrEMBL
Match: tr|A0A2N9FMM1|A0A2N9FMM1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16295 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-07
Identity = 46/163 (28.22%), Postives = 66/163 (40.49%), Query Frame = 0 

Query: 1   MLQRIRGVSEKEVEMEFRDIVAASMADKAVKTSMEE------------------------ 60
           ML+RIRGVS+KE+E EF+D++AAS A KAVK                             
Sbjct: 244 MLKRIRGVSDKEIEAEFKDLLAASEASKAVKNPWRNIKNRQYRPQLIMSIAIPFFQQFTG 303

Query: 61  ------FEPLVLETMXXXXXXXXXXXXXXXQLR--------------------------- 107
                 + P +  T+                +                            
Sbjct: 304 INVIMFYAPQLFRTIGFGDNASLLSALITGGINVLATIVSIYGTDKWGRRFLFLEGGIQM 363

[Close]
BLAST of CsaV3_5G039110 vs. TrEMBL
Match: tr|A0A2N9I9B0|A0A2N9I9B0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48555 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-07
Identity = 47/157 (29.94%), Postives = 65/157 (41.40%), Query Frame = 0 

Query: 1   MLQRIRGVSEKEVEMEFRDIVAASMADKAVKTSMEE------------------------ 60
           ML+RIRGVS+KE+E EF+DI+AAS A KAVK                             
Sbjct: 244 MLKRIRGVSDKEIEAEFKDILAASEASKAVKHPWRNIKNRQYRPQLIMSILIPFFQQFTG 303

Query: 61  ------FEPLVLETMXXXXXXXXXXXXXXXQLR--------------------------- 101
                 + P + +T+                +                            
Sbjct: 304 INVIMFYAPQLFKTIGFGDNASLLSALITGGINVLATIVSIYGTDKWGRRFLFLEGGIQM 363

The following BLAST results are available for this feature:
BLAST of CsaV3_5G039110 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52570.13.0e-50100.00hypothetical protein Csa_5G643980 [Cucumis sativus][more]
POE66846.19.9e-0934.71sugar carrier protein c [Quercus suber][more]
KGN48175.11.3e-0831.85hypothetical protein Csa_6G446360 [Cucumis sativus][more]
XP_022151700.11.3e-0833.12sugar transport protein 12-like [Momordica charantia][more]
XP_022133730.11.7e-0833.12sugar carrier protein C-like [Momordica charantia][more]
BLAST of CsaV3_5G039110 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G039110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G039110 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KSK7|A0A0A0KSK7_CUCSA2.0e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643980 PE=4 SV=1[more]
tr|A0A2P4IEA0|A0A2P4IEA0_QUESU6.5e-0934.71Sugar carrier protein c OS=Quercus suber OX=58331 GN=CFP56_52689 PE=4 SV=1[more]
tr|A0A0A0KEQ3|A0A0A0KEQ3_CUCSA8.5e-0931.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446360 PE=3 SV=1[more]
tr|A0A2N9FMM1|A0A2N9FMM1_FAGSY1.6e-0728.22Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16295 PE=3 SV=1[more]
tr|A0A2N9I9B0|A0A2N9I9B0_FAGSY1.6e-0729.94Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48555 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055085 transmembrane transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0022857 transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G039110.1CsaV3_5G039110.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G039110CSPI05G29980Wild cucumber (PI 183967)cpicucB284
CsaV3_5G039110Bhi06G000080Wax gourdcucwgoB474
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G039110Cucumber (Chinese Long) v3cuccucB198
CsaV3_5G039110Silver-seed gourdcarcucB0022
CsaV3_5G039110Silver-seed gourdcarcucB0296
CsaV3_5G039110Cucumber (Gy14) v2cgybcucB232
CsaV3_5G039110Cucumber (Gy14) v1cgycucB357
CsaV3_5G039110Cucumber (Gy14) v1cgycucB444
CsaV3_5G039110Cucurbita maxima (Rimu)cmacucB0353
CsaV3_5G039110Cucurbita maxima (Rimu)cmacucB0860
CsaV3_5G039110Cucurbita moschata (Rifu)cmocucB0348
CsaV3_5G039110Cucurbita moschata (Rifu)cmocucB0493
CsaV3_5G039110Cucurbita moschata (Rifu)cmocucB0846
CsaV3_5G039110Cucurbita pepo (Zucchini)cpecucB0050
CsaV3_5G039110Cucurbita pepo (Zucchini)cpecucB0210
CsaV3_5G039110Cucurbita pepo (Zucchini)cpecucB0517
CsaV3_5G039110Wild cucumber (PI 183967)cpicucB298
CsaV3_5G039110Bottle gourd (USVL1VR-Ls)cuclsiB378
CsaV3_5G039110Melon (DHL92) v3.5.1cucmeB354
CsaV3_5G039110Melon (DHL92) v3.5.1cucmeB358
CsaV3_5G039110Melon (DHL92) v3.5.1cucmeB391
CsaV3_5G039110Melon (DHL92) v3.6.1cucmedB346
CsaV3_5G039110Melon (DHL92) v3.6.1cucmedB350
CsaV3_5G039110Melon (DHL92) v3.6.1cucmedB386
CsaV3_5G039110Watermelon (Charleston Gray)cucwcgB376
CsaV3_5G039110Watermelon (97103) v1cucwmB432
CsaV3_5G039110Watermelon (97103) v1cucwmB462
CsaV3_5G039110Watermelon (97103) v2cucwmbB374
CsaV3_5G039110Wax gourdcucwgoB536