CsaV3_5G039010 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G039010
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 30851647 .. 30851904 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCGAGCTGAATGAAGATTGGCTCCAGCAAGTCGCCCCCACGTTTTGTAAAACCGCCCCCACTATTATCCACCGAAGGATTTTTCTGGGGTTACCGAGTGGACTTCAGAGATTCCATTTTCGACTTTCAGGACTTGGTCACCGGAGGAAATATCATCGTTTGAGCGAGAGGTACGAGCTTTGTTTTTCAGTTTCAGCCCATTTACTGATGTGGGGTTGCCACATTTTGTCGATTACAGCATTTGGGTTGTTCTAG

mRNA sequence

ATGTGCGAGCTGAATGAAGATTGGCTCCAGCAAGTCGCCCCCACGTTTTGTAAAACCGCCCCCACTATTATCCACCGAAGGATTTTTCTGGGGTTACCGAGTGGACTTCAGAGATTCCATTTTCGACTTTCAGGACTTGGTCACCGGAGGAAATATCATCGTTTGAGCGAGAGGTACGAGCTTTGTTTTTCAGTTTCAGCCCATTTACTGATGTGGGGTTGCCACATTTTGTCGATTACAGCATTTGGGTTGTTCTAG

Coding sequence (CDS)

ATGTGCGAGCTGAATGAAGATTGGCTCCAGCAAGTCGCCCCCACGTTTTGTAAAACCGCCCCCACTATTATCCACCGAAGGATTTTTCTGGGGTTACCGAGTGGACTTCAGAGATTCCATTTTCGACTTTCAGGACTTGGTCACCGGAGGAAATATCATCGTTTGAGCGAGAGGTACGAGCTTTGTTTTTCAGTTTCAGCCCATTTACTGATGTGGGGTTGCCACATTTTGTCGATTACAGCATTTGGGTTGTTCTAG

Protein sequence

MCELNEDWLQQVAPTFCKTAPTIIHRRIFLGLPSGLQRFHFRLSGLGHRRKYHRLSERYELCFSVSAHLLMWGCHILSITAFGLF
Homology
[Close]
BLAST of CsaV3_5G039010 vs. NCBI nr
Match: KGN52561.1 (hypothetical protein Csa_5G643890 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.5e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MCELNEDWLQQVAPTFCKTAPTIIHRRIFLGLPSGLQRFHFRLSGLGHRRKYHRLSERYE 60
          MCELNEDWLQQVAPTFCKTAPTIIHRRIFLGLPSGLQRFHFRLSGLGHRRKYHRLSERYE
Sbjct: 1  MCELNEDWLQQVAPTFCKTAPTIIHRRIFLGLPSGLQRFHFRLSGLGHRRKYHRLSERYE 60

Query: 61 LCFSVSAHLLMWGCHILSITAFGLF 86
          LCFSVSAHLLMWGCHILSITAFGLF
Sbjct: 61 LCFSVSAHLLMWGCHILSITAFGLF 85

[Close]
BLAST of CsaV3_5G039010 vs. TrEMBL
Match: tr|A0A0A0KXP0|A0A0A0KXP0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643890 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MCELNEDWLQQVAPTFCKTAPTIIHRRIFLGLPSGLQRFHFRLSGLGHRRKYHRLSERYE 60
          MCELNEDWLQQVAPTFCKTAPTIIHRRIFLGLPSGLQRFHFRLSGLGHRRKYHRLSERYE
Sbjct: 1  MCELNEDWLQQVAPTFCKTAPTIIHRRIFLGLPSGLQRFHFRLSGLGHRRKYHRLSERYE 60

Query: 61 LCFSVSAHLLMWGCHILSITAFGLF 86
          LCFSVSAHLLMWGCHILSITAFGLF
Sbjct: 61 LCFSVSAHLLMWGCHILSITAFGLF 85

The following BLAST results are available for this feature:
BLAST of CsaV3_5G039010 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52561.11.5e-43100.00hypothetical protein Csa_5G643890 [Cucumis sativus][more]
BLAST of CsaV3_5G039010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G039010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G039010 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KXP0|A0A0A0KXP0_CUCSA1.0e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643890 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G039010.1CsaV3_5G039010.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G039010Cucumber (Chinese Long) v3cuccucB198
CsaV3_5G039010Silver-seed gourdcarcucB0022
CsaV3_5G039010Silver-seed gourdcarcucB0296
CsaV3_5G039010Cucumber (Gy14) v2cgybcucB232
CsaV3_5G039010Cucumber (Gy14) v1cgycucB357
CsaV3_5G039010Cucumber (Gy14) v1cgycucB444
CsaV3_5G039010Cucurbita maxima (Rimu)cmacucB0353
CsaV3_5G039010Cucurbita maxima (Rimu)cmacucB0860
CsaV3_5G039010Cucurbita moschata (Rifu)cmocucB0348
CsaV3_5G039010Cucurbita moschata (Rifu)cmocucB0493
CsaV3_5G039010Cucurbita moschata (Rifu)cmocucB0846
CsaV3_5G039010Cucurbita pepo (Zucchini)cpecucB0050
CsaV3_5G039010Cucurbita pepo (Zucchini)cpecucB0210
CsaV3_5G039010Cucurbita pepo (Zucchini)cpecucB0517
CsaV3_5G039010Wild cucumber (PI 183967)cpicucB284
CsaV3_5G039010Wild cucumber (PI 183967)cpicucB298
CsaV3_5G039010Bottle gourd (USVL1VR-Ls)cuclsiB378
CsaV3_5G039010Melon (DHL92) v3.5.1cucmeB354
CsaV3_5G039010Melon (DHL92) v3.5.1cucmeB358
CsaV3_5G039010Melon (DHL92) v3.5.1cucmeB391
CsaV3_5G039010Melon (DHL92) v3.6.1cucmedB346
CsaV3_5G039010Melon (DHL92) v3.6.1cucmedB350
CsaV3_5G039010Melon (DHL92) v3.6.1cucmedB386
CsaV3_5G039010Watermelon (Charleston Gray)cucwcgB376
CsaV3_5G039010Watermelon (97103) v1cucwmB432
CsaV3_5G039010Watermelon (97103) v1cucwmB462
CsaV3_5G039010Watermelon (97103) v2cucwmbB374
CsaV3_5G039010Wax gourdcucwgoB474
CsaV3_5G039010Wax gourdcucwgoB536