CsaV3_5G037260 (gene) Cucumber (Chinese Long) v3

NameCsaV3_5G037260
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 29578634 .. 29578827 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATGTGAACGGAGAGAAGATGAGGAATGTGAAAAGCATAGGAGATGAGGAATCTGAGGCTGAAGAAGTCAGTGGTCGATGGTTGTTAACCATCAGAGTAGTTTATCGGATGGATTGTCTTCACCGCCCCGCCCCGCCCAATGGCCATCGATGATAATTCAAACGTTGATGGATTATCTTCCTCCTTAG

mRNA sequence

ATGGAGAATGTGAACGGAGAGAAGATGAGGAATGTGAAAAGCATAGGAGATGAGGAATCTGAGGCTGAAGAAAGTAGTTTATCGGATGGATTGTCTTCACCGCCCCGCCCCGCCCAATGGCCATCGATGATAATTCAAACGTTGATGGATTATCTTCCTCCTTAG

Coding sequence (CDS)

ATGGAGAATGTGAACGGAGAGAAGATGAGGAATGTGAAAAGCATAGGAGATGAGGAATCTGAGGCTGAAGAAAGTAGTTTATCGGATGGATTGTCTTCACCGCCCCGCCCCGCCCAATGGCCATCGATGATAATTCAAACGTTGATGGATTATCTTCCTCCTTAG

Protein sequence

MENVNGEKMRNVKSIGDEESEAEESSLSDGLSSPPRPAQWPSMIIQTLMDYLPP
BLAST of CsaV3_5G037260 vs. NCBI nr
Match: KGN52380.1 (hypothetical protein Csa_5G630830 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-20
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1  MENVNGEKMRNVKSIGDEESEAEESSLSDGLSSPPRPAQWPSMIIQTLMDYLPP 55
          MENVNGEKMRNVKSIGDEESEAEESSLSDGLSSPPRPAQWPSMIIQTLMDYLPP
Sbjct: 1  MENVNGEKMRNVKSIGDEESEAEESSLSDGLSSPPRPAQWPSMIIQTLMDYLPP 54

BLAST of CsaV3_5G037260 vs. TrEMBL
Match: tr|A0A0A0KRY2|A0A0A0KRY2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630830 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.7e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1  MENVNGEKMRNVKSIGDEESEAEESSLSDGLSSPPRPAQWPSMIIQTLMDYLPP 55
          MENVNGEKMRNVKSIGDEESEAEESSLSDGLSSPPRPAQWPSMIIQTLMDYLPP
Sbjct: 1  MENVNGEKMRNVKSIGDEESEAEESSLSDGLSSPPRPAQWPSMIIQTLMDYLPP 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN52380.11.2e-20100.00hypothetical protein Csa_5G630830 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KRY2|A0A0A0KRY2_CUCSA7.7e-21100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630830 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G037260.1CsaV3_5G037260.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None