CsaV3_5G036320 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G036320
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	WPP domain-associated protein, putative
Location	chr5 : 28646803 .. 28647329 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCATACTTTGGATCCACTGCCTCAAGTCATGGCTTCTTTGCAAGAAAATAAATCACTTTATAAGAAGGCTTTCATCAGAAGATGTCAAAATCTCAGAAAAGCTGAAAATGAGGTTCTGTTCTCAACTTCTAATAATACTGATGCTTTTCACTCGTTGTACAGCCAAGTTTGAGAATAATTTTCTGTCATTTAATTGTTTTTCCACATTCCTATTTGATATCCATTAGGTGGATATTTTAGGGGATCAAGTGGATATACTTCTTAGCTTGATTGAGAAGATATACTCAATTCTAAATCAACAATCACCAGCTTTGCAGCAATATTTTGATGTAATATCTCTGCATGTCTGTTTTTTTCCTCATATTTTTGTACCAATCTCATAGCAAATAACTTTGCATCAATCTTAGCTGCTATCTTTTTATCAATGTGCAGGTCTCGGAAATTCTTAGGTCAATCGCGGAGGAGGTACCGGTAATTGCTTGTACACCACCTGTAAAGTTAGATACAAGCTCTGATGTGTAA

mRNA sequence

ATGAAGCATACTTTGGATCCACTGCCTCAAGTCATGGCTTCTTTGCAAGAAAATAAATCACTTTATAAGAAGGCTTTCATCAGAAGATGTCAAAATCTCAGAAAAGCTGAAAATGAGGTTCTGTTCTCAACTTCTAATAATACTGATGCTTTTCACTCGTTGTACAGCCAAGTGGATATTTTAGGGGATCAAGTGGATATACTTCTTAGCTTGATTGAGAAGATATACTCAATTCTAAATCAACAATCACCAGCTTTGCAGCAATATTTTGATGTCTCGGAAATTCTTAGGTCAATCGCGGAGGAGGTACCGGTAATTGCTTGTACACCACCTGTAAAGTTAGATACAAGCTCTGATGTGTAA

Coding sequence (CDS)

ATGAAGCATACTTTGGATCCACTGCCTCAAGTCATGGCTTCTTTGCAAGAAAATAAATCACTTTATAAGAAGGCTTTCATCAGAAGATGTCAAAATCTCAGAAAAGCTGAAAATGAGGTTCTGTTCTCAACTTCTAATAATACTGATGCTTTTCACTCGTTGTACAGCCAAGTGGATATTTTAGGGGATCAAGTGGATATACTTCTTAGCTTGATTGAGAAGATATACTCAATTCTAAATCAACAATCACCAGCTTTGCAGCAATATTTTGATGTCTCGGAAATTCTTAGGTCAATCGCGGAGGAGGTACCGGTAATTGCTTGTACACCACCTGTAAAGTTAGATACAAGCTCTGATGTGTAA

Protein sequence

MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQVDILGDQVDILLSLIEKIYSILNQQSPALQQYFDVSEILRSIAEEVPVIACTPPVKLDTSSDV

Homology

[Close]

BLAST of CsaV3_5G036320 vs. NCBI nr
Match: KGN52275.1 (hypothetical protein Csa_5G623390 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 3.8e-48
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQVDI 60
           MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQVDI
Sbjct: 1   MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQVDI 60

Query: 61  LGDXXXXXXXXXXXXXXXXNQQSPALQQYFDVSEILRSIAEEVPVIACTPPVKLDTSSDV 120
           LGDXXXXXXXXXXXXXXXXNQQSPALQQYFDVSEILRSIAEEVPVIACTPPVKLDTSSDV
Sbjct: 61  LGDXXXXXXXXXXXXXXXXNQQSPALQQYFDVSEILRSIAEEVPVIACTPPVKLDTSSDV 120

[Close]

BLAST of CsaV3_5G036320 vs. NCBI nr
Match: XP_022985013.1 (uncharacterized protein LOC111483104 [Cucurbita maxima])

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-23
Identity = 71/120 (59.17%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 1   MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQVDI 60
           MKHTL PLPQVMASL+E++SLYKKAFIRRCQNLRKAENE                  VD+
Sbjct: 867 MKHTLYPLPQVMASLRESESLYKKAFIRRCQNLRKAENE------------------VDL 926

Query: 61  LGDXXXXXXXXXXXXXXXXNQQSPALQQYFDVSEILRSIAEEVPVIACTPPVKLDTSSDV 120
           LGD                NQQSP LQQY DVSEILR I E+V V++ TPP KLDTSSDV
Sbjct: 927 LGDQVDILLRLIEKVYLILNQQSPVLQQYSDVSEILRLIKEQVAVLS-TPPKKLDTSSDV 967

[Close]

BLAST of CsaV3_5G036320 vs. NCBI nr
Match: XP_022956940.1 (uncharacterized protein LOC111458475 [Cucurbita moschata])

HSP 1 Score: 118.2 bits (295), Expect = 1.9e-23
Identity = 71/120 (59.17%), Postives = 77/120 (64.17%), Query Frame = 0


Query: 1   MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQVDI 60
           MKHTL PLPQVMASL+E++SLYKKAFIRRCQNLRKAENE                  VD+
Sbjct: 860 MKHTLYPLPQVMASLRESESLYKKAFIRRCQNLRKAENE------------------VDL 919

Query: 61  LGDXXXXXXXXXXXXXXXXNQQSPALQQYFDVSEILRSIAEEVPVIACTPPVKLDTSSDV 120
           LGD                NQQSP LQQY DVSEILR I E+V V + TPP KLDTSSDV
Sbjct: 920 LGDQVDILLRLIEKVYLILNQQSPVLQQYSDVSEILRLIKEQVAVFS-TPPKKLDTSSDV 960

[Close]

BLAST of CsaV3_5G036320 vs. NCBI nr
Match: XP_011656266.1 (PREDICTED: uncharacterized protein LOC101222640 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1   MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQV 59
           MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQV
Sbjct: 585 MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQV 642

[Close]

BLAST of CsaV3_5G036320 vs. NCBI nr
Match: XP_023542201.1 (uncharacterized protein LOC111802165 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.8 bits (286), Expect = 2.1e-22
Identity = 70/120 (58.33%), Postives = 76/120 (63.33%), Query Frame = 0


Query: 1   MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQVDI 60
           MK TL PLPQVMASL E++SLYKKAFIRRCQNLRKAENE                  VD+
Sbjct: 866 MKRTLYPLPQVMASLLESESLYKKAFIRRCQNLRKAENE------------------VDL 925

Query: 61  LGDXXXXXXXXXXXXXXXXNQQSPALQQYFDVSEILRSIAEEVPVIACTPPVKLDTSSDV 120
           LGD                NQQSP LQQY DVSEILR I E+V V++ TPP KLDTSSDV
Sbjct: 926 LGDQVDILLRLIEKVYLILNQQSPVLQQYSDVSEILRLIKEQVAVLS-TPPKKLDTSSDV 966

[Close]

BLAST of CsaV3_5G036320 vs. TrEMBL
Match: tr|A0A0A0KRK0|A0A0A0KRK0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623390 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.5e-48
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQVDI 60
           MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQVDI
Sbjct: 1   MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQVDI 60

Query: 61  LGDXXXXXXXXXXXXXXXXNQQSPALQQYFDVSEILRSIAEEVPVIACTPPVKLDTSSDV 120
           LGDXXXXXXXXXXXXXXXXNQQSPALQQYFDVSEILRSIAEEVPVIACTPPVKLDTSSDV
Sbjct: 61  LGDXXXXXXXXXXXXXXXXNQQSPALQQYFDVSEILRSIAEEVPVIACTPPVKLDTSSDV 120

[Close]

BLAST of CsaV3_5G036320 vs. TrEMBL
Match: tr|A0A1S3BGE6|A0A1S3BGE6_CUCME (uncharacterized protein LOC103489567 OS=Cucumis melo OX=3656 GN=LOC103489567 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-22
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1   MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQV 59
           MKHTLDPLPQ MASLQENKSLYKKAFIRRCQNLRKAENEVLFS SNNTDAFHSLYSQV
Sbjct: 585 MKHTLDPLPQAMASLQENKSLYKKAFIRRCQNLRKAENEVLFSISNNTDAFHSLYSQV 642

[Close]

BLAST of CsaV3_5G036320 vs. TrEMBL
Match: tr|A0A2P5AC44|A0A2P5AC44_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_347230 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-10
Identity = 42/104 (40.38%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 3   HTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQVDILG 62
           H LDPL ++++SL+E KSLYKKAFIRRCQNL KAE E                  VD+LG
Sbjct: 851 HNLDPLAEIVSSLREKKSLYKKAFIRRCQNLHKAETE------------------VDLLG 910

Query: 63  DXXXXXXXXXXXXXXXXNQQSPALQQYFDVSEILRSIAEEVPVI 107
           D                N  SP LQQY +V ++   ++E + +I
Sbjct: 911 DQVEVILGLLQKIYKTLNHYSPVLQQYSEVGKVQEQVSELMKLI 936

[Close]

BLAST of CsaV3_5G036320 vs. TrEMBL
Match: tr|A0A1Q3BQJ9|A0A1Q3BQJ9_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_13472 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.8e-10
Identity = 44/103 (42.72%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 1    MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQVDI 60
            MK  LDPL +++ASL+  +SLY+KAFIRRCQNLRKAENE                  VD+
Sbjct: 929  MKSDLDPLVELVASLRAKESLYQKAFIRRCQNLRKAENE------------------VDL 988

Query: 61   LGDXXXXXXXXXXXXXXXXNQQSPALQQYFDVSEILRSIAEEV 104
            LGD                   S  LQ+YF+VS+IL+ I +E+
Sbjct: 989  LGDQVNVLLSLLEKIYMKLYHHSSGLQKYFEVSKILKLIKKEL 1013

[Close]

BLAST of CsaV3_5G036320 vs. TrEMBL
Match: tr|A0A2I4FAM0|A0A2I4FAM0_9ROSI (WPP domain-associated protein isoform X2 OS=Juglans regia OX=51240 GN=LOC108997058 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.0e-09
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 1   MKHTLDPLPQVMASLQENKSLYKKAFIRRCQNLRKAENEVLFSTSNNTDAFHSLYSQVDI 60
           +K  LDPL +++ASL+  + LY+KAF+RRC NL+KAE E                  VD+
Sbjct: 897 VKDNLDPLVELVASLRNKELLYRKAFVRRCYNLQKAELE------------------VDL 956

Query: 61  LGDXXXXXXXXXXXXXXXXNQQSPALQQYFDVSEILRSIAEEV 104
           LGD                +Q SPALQQYF+VS+IL  I +E+
Sbjct: 957 LGDQVDVLLGLLEKIYTRLHQYSPALQQYFEVSDILNLIKKEL 981

The following BLAST results are available for this feature:

BLAST of CsaV3_5G036320 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52275.1	3.8e-48	100.00	hypothetical protein Csa_5G623390 [Cucumis sativus]	[more]
XP_022985013.1	1.1e-23	59.17	uncharacterized protein LOC111483104 [Cucurbita maxima]	[more]
XP_022956940.1	1.9e-23	59.17	uncharacterized protein LOC111458475 [Cucurbita moschata]	[more]
XP_011656266.1	2.5e-23	100.00	PREDICTED: uncharacterized protein LOC101222640 [Cucumis sativus]	[more]
XP_023542201.1	2.1e-22	58.33	uncharacterized protein LOC111802165 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_5G036320 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G036320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G036320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KRK0\|A0A0A0KRK0_CUCSA	2.5e-48	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623390 PE=4 SV=1	[more]
tr\|A0A1S3BGE6\|A0A1S3BGE6_CUCME	2.4e-22	96.55	uncharacterized protein LOC103489567 OS=Cucumis melo OX=3656 GN=LOC103489567 PE=...	[more]
tr\|A0A2P5AC44\|A0A2P5AC44_PARAD	3.5e-10	40.38	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_347230 PE...	[more]
tr\|A0A1Q3BQJ9\|A0A1Q3BQJ9_CEPFO	7.8e-10	42.72	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_13472 PE=4...	[more]
tr\|A0A2I4FAM0\|A0A2I4FAM0_9ROSI	3.0e-09	40.78	WPP domain-associated protein isoform X2 OS=Juglans regia OX=51240 GN=LOC1089970...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR037490	WAP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G036320.1	CsaV3_5G036320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037490	WPP domain-associated protein	PANTHER	PTHR33883	FAMILY NOT NAMED	coord: 1..40 coord: 57..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G036320	CSPI05G27190	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G036320	CmaCh04G013670	Cucurbita maxima (Rimu)	cmacucB0885
CsaV3_5G036320	CmoCh04G014400	Cucurbita moschata (Rifu)	cmocucB0874
CsaV3_5G036320	Cp4.1LG01g14850	Cucurbita pepo (Zucchini)	cpecucB0543
CsaV3_5G036320	CsGy5G026610	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G036320	Carg01957	Silver-seed gourd	carcucB0881
CsaV3_5G036320	Cla020566	Watermelon (97103) v1	cucwmB428
CsaV3_5G036320	ClCG05G020990	Watermelon (Charleston Gray)	cucwcgB415
CsaV3_5G036320	Lsi04G000660	Bottle gourd (USVL1VR-Ls)	cuclsiB393
CsaV3_5G036320	MELO3C012431.2	Melon (DHL92) v3.6.1	cucmedB375
CsaV3_5G036320	Cla97C05G102630	Watermelon (97103) v2	cucwmbB398
CsaV3_5G036320	Bhi07G000741	Wax gourd	cucwgoB513

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G036320	Cucumber (Gy14) v2	cgybcucB138
CsaV3_5G036320	Cucumber (Gy14) v2	cgybcucB295
CsaV3_5G036320	Cucumber (Gy14) v1	cgycucB204
CsaV3_5G036320	Cucumber (Gy14) v1	cgycucB475
CsaV3_5G036320	Cucumber (Gy14) v1	cgycucB479
CsaV3_5G036320	Cucurbita maxima (Rimu)	cmacucB0359
CsaV3_5G036320	Cucurbita maxima (Rimu)	cmacucB0498
CsaV3_5G036320	Cucurbita maxima (Rimu)	cmacucB0871
CsaV3_5G036320	Cucurbita moschata (Rifu)	cmocucB0356
CsaV3_5G036320	Cucurbita moschata (Rifu)	cmocucB0487
CsaV3_5G036320	Cucurbita moschata (Rifu)	cmocucB0856
CsaV3_5G036320	Cucurbita pepo (Zucchini)	cpecucB0043
CsaV3_5G036320	Cucurbita pepo (Zucchini)	cpecucB0219
CsaV3_5G036320	Cucurbita pepo (Zucchini)	cpecucB0527
CsaV3_5G036320	Wild cucumber (PI 183967)	cpicucB173
CsaV3_5G036320	Wild cucumber (PI 183967)	cpicucB361
CsaV3_5G036320	Bottle gourd (USVL1VR-Ls)	cuclsiB412
CsaV3_5G036320	Melon (DHL92) v3.5.1	cucmeB403
CsaV3_5G036320	Melon (DHL92) v3.5.1	cucmeB381
CsaV3_5G036320	Melon (DHL92) v3.6.1	cucmedB396
CsaV3_5G036320	Watermelon (Charleston Gray)	cucwcgB434
CsaV3_5G036320	Watermelon (97103) v1	cucwmB404
CsaV3_5G036320	Watermelon (97103) v1	cucwmB457
CsaV3_5G036320	Watermelon (97103) v2	cucwmbB421
CsaV3_5G036320	Cucumber (Chinese Long) v3	cuccucB133
CsaV3_5G036320	Cucumber (Chinese Long) v3	cuccucB206
CsaV3_5G036320	Silver-seed gourd	carcucB0298
CsaV3_5G036320	Silver-seed gourd	carcucB0521
CsaV3_5G036320	Silver-seed gourd	carcucB0726