CsaV3_5G035490 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G035490
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	proline-, glutamic acid- and leucine-rich protein 1
Location	chr5 : 28029501 .. 28030004 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTCTAATACATCCGAGGGTCCTTCCCCTCTCGGATTTCTTGCCATTGCGCTTGAGCTCTCCTGAACCACAAGCTGCCTTTAAATTCCAGGAAGATCTGTACTTCAACAGTAACGATTCTAGGAAATTGTTGAAGGTCGGCCCGCAAAGCATGGAGCAGATGGCCTCCGAGGCTCTAATTAGTGATGATGTGGTAGATAACAATGAAATGACGTATAGCACCTCAAATGATATTGAAAAGGAGCCCTCTGCAAATGGCATAGCGAATATAGAAATGCCCAAGAGAACCGAACAGGCCACTGCAGCAGCCATCTCAGAAGTAGGGGTTGTAGCGGAAGATGACGTTGAATTTGCTAATGCAAGTATGAATAGTTCCCCCATGTCATCAAAATCAGATAAAATCGAAGATTTTGGACGGGATTCGAGCTCGAATTTATTGCTAGAAGATGACTTTCCTGATATTATTGATGCAGATCCTGATACAGACTATGAAGAGTGA

mRNA sequence

ATGGAGGTTCTAATACATCCGAGGGTCCTTCCCCTCTCGGATTTCTTGCCATTGCGCTTGAGCTCTCCTGAACCACAAGCTGCCTTTAAATTCCAGGAAGATCTGTACTTCAACAGTAACGATTCTAGGAAATTGTTGAAGGTCGGCCCGCAAAGCATGGAGCAGATGGCCTCCGAGGCTCTAATTAGTGATGATGTGGTAGATAACAATGAAATGACGTATAGCACCTCAAATGATATTGAAAAGGAGCCCTCTGCAAATGGCATAGCGAATATAGAAATGCCCAAGAGAACCGAACAGGCCACTGCAGCAGCCATCTCAGAAGTAGGGGTTGTAGCGGAAGATGACGTTGAATTTGCTAATGCAAGTATGAATAGTTCCCCCATGTCATCAAAATCAGATAAAATCGAAGATTTTGGACGGGATTCGAGCTCGAATTTATTGCTAGAAGATGACTTTCCTGATATTATTGATGCAGATCCTGATACAGACTATGAAGAGTGA

Coding sequence (CDS)

ATGGAGGTTCTAATACATCCGAGGGTCCTTCCCCTCTCGGATTTCTTGCCATTGCGCTTGAGCTCTCCTGAACCACAAGCTGCCTTTAAATTCCAGGAAGATCTGTACTTCAACAGTAACGATTCTAGGAAATTGTTGAAGGTCGGCCCGCAAAGCATGGAGCAGATGGCCTCCGAGGCTCTAATTAGTGATGATGTGGTAGATAACAATGAAATGACGTATAGCACCTCAAATGATATTGAAAAGGAGCCCTCTGCAAATGGCATAGCGAATATAGAAATGCCCAAGAGAACCGAACAGGCCACTGCAGCAGCCATCTCAGAAGTAGGGGTTGTAGCGGAAGATGACGTTGAATTTGCTAATGCAAGTATGAATAGTTCCCCCATGTCATCAAAATCAGATAAAATCGAAGATTTTGGACGGGATTCGAGCTCGAATTTATTGCTAGAAGATGACTTTCCTGATATTATTGATGCAGATCCTGATACAGACTATGAAGAGTGA

Protein sequence

MEVLIHPRVLPLSDFLPLRLSSPEPQAAFKFQEDLYFNSNDSRKLLKVGPQSMEQMASEALISDDVVDNNEMTYSTSNDIEKEPSANGIANIEMPKRTEQATAAAISEVGVVAEDDVEFANASMNSSPMSSKSDKIEDFGRDSSSNLLLEDDFPDIIDADPDTDYEE

Homology

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BLAST of CsaV3_5G035490 vs. NCBI nr
Match: XP_008446762.1 (PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 [Cucumis melo])

HSP 1 Score: 283.5 bits (724), Expect = 4.7e-73
Identity = 152/167 (91.02%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MEVLIHPRVLPLSDFLPLRLSSPEPQAAFKFQEDLYFNSNDSRKLLKVGPQSMEQMASEA 60
           MEVLIHPRVLPLSDFLPLRLSSPEPQAAFKFQEDLYFNSNDSRKLLKVG QSMEQ ASEA
Sbjct: 629 MEVLIHPRVLPLSDFLPLRLSSPEPQAAFKFQEDLYFNSNDSRKLLKVGTQSMEQRASEA 688

Query: 61  LISDDVVDNNEMTYSTSNDIEKEPSANGIANIEMPKRTEQATAAAISEVGVVAEDDVEFA 120
           LI DDV+DNNEMTYS SNDIE EPSAN +ANIE PKRTEQ TAAAISE GVVA+DDV FA
Sbjct: 689 LIRDDVLDNNEMTYSPSNDIENEPSANALANIERPKRTEQTTAAAISEEGVVAQDDVVFA 748

Query: 121 NASMNSSPMSSKSDKIEDFGRDSSSNLLLEDDFPDIIDADPDTDYEE 168
           NASMNSSP+SSKS KIEDFGRDSSSNLLLEDDFPDIIDADPDTDYEE
Sbjct: 749 NASMNSSPISSKSYKIEDFGRDSSSNLLLEDDFPDIIDADPDTDYEE 795

[Close]

BLAST of CsaV3_5G035490 vs. NCBI nr
Match: XP_022956971.1 (proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita moschata] >XP_022956973.1 proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita moschata] >XP_022956974.1 proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita moschata] >XP_022956975.1 proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 184.5 bits (467), Expect = 3.0e-43
Identity = 112/186 (60.22%), Postives = 128/186 (68.82%), Query Frame = 0


Query: 1   MEVLIHPRVLPLSDFLPLRLSSPEPQAAFKFQEDLYFNSNDSRKLLKVGPQSMEQM---- 60
           MEVLIHPRVLPLSDFLP+RLSSPEPQA +KFQED+YF S  S KLLK+  Q MEQ     
Sbjct: 632 MEVLIHPRVLPLSDFLPVRLSSPEPQATYKFQEDMYFGSMTSSKLLKIDTQGMEQSDPEL 691

Query: 61  -------------ASEALISD---DVVDNNEMTYSTSNDIEKEPSANGIANIEMPKRTEQ 120
                          EA I D   + +++ EMTY+ SND+EKEP ANG+ +IE PK TEQ
Sbjct: 692 DDEFSYDRVFANNIEEAPIRDATGNPINDYEMTYNISNDLEKEPYANGLVSIETPKTTEQ 751

Query: 121 ATAAAISEVGVVAEDDVEFANASMNSSPMSSKSDKIEDFGRDSSSNLLLEDDFPDIIDAD 167
           A  AA++EVGVV + DV FA      SPMSSKSDK +DF  D  S LL EDDFPDIIDAD
Sbjct: 752 AATAAVTEVGVVEKVDV-FA------SPMSSKSDKTDDFVHDLGSKLLQEDDFPDIIDAD 810

[Close]

BLAST of CsaV3_5G035490 vs. NCBI nr
Match: XP_022956977.1 (proline-, glutamic acid- and leucine-rich protein 1-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 184.5 bits (467), Expect = 3.0e-43
Identity = 112/186 (60.22%), Postives = 128/186 (68.82%), Query Frame = 0


Query: 1   MEVLIHPRVLPLSDFLPLRLSSPEPQAAFKFQEDLYFNSNDSRKLLKVGPQSMEQM---- 60
           MEVLIHPRVLPLSDFLP+RLSSPEPQA +KFQED+YF S  S KLLK+  Q MEQ     
Sbjct: 514 MEVLIHPRVLPLSDFLPVRLSSPEPQATYKFQEDMYFGSMTSSKLLKIDTQGMEQSDPEL 573

Query: 61  -------------ASEALISD---DVVDNNEMTYSTSNDIEKEPSANGIANIEMPKRTEQ 120
                          EA I D   + +++ EMTY+ SND+EKEP ANG+ +IE PK TEQ
Sbjct: 574 DDEFSYDRVFANNIEEAPIRDATGNPINDYEMTYNISNDLEKEPYANGLVSIETPKTTEQ 633

Query: 121 ATAAAISEVGVVAEDDVEFANASMNSSPMSSKSDKIEDFGRDSSSNLLLEDDFPDIIDAD 167
           A  AA++EVGVV + DV FA      SPMSSKSDK +DF  D  S LL EDDFPDIIDAD
Sbjct: 634 AATAAVTEVGVVEKVDV-FA------SPMSSKSDKTDDFVHDLGSKLLQEDDFPDIIDAD 692

[Close]

BLAST of CsaV3_5G035490 vs. NCBI nr
Match: XP_023517133.1 (proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023517141.1 proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023517150.1 proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023517157.1 proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.3 bits (464), Expect = 6.6e-43
Identity = 113/186 (60.75%), Postives = 127/186 (68.28%), Query Frame = 0


Query: 1   MEVLIHPRVLPLSDFLPLRLSSPEPQAAFKFQEDLYFNSNDSRKLLKVGPQSMEQM---- 60
           MEVLIHPRVLPLSDFLP+RLSSPEPQA +KFQED+YF S  S KLLKV  Q MEQ     
Sbjct: 632 MEVLIHPRVLPLSDFLPVRLSSPEPQATYKFQEDMYFGSMTSSKLLKVDTQGMEQSDPEL 691

Query: 61  -------------ASEALISD---DVVDNNEMTYSTSNDIEKEPSANGIANIEMPKRTEQ 120
                          EA I D   + +++ EMTY+ SND+E EP ANG+ +IE PK TEQ
Sbjct: 692 DDEFSYDRVFANNIEEAPIRDATGNPINDYEMTYNISNDLENEPYANGLVSIETPKTTEQ 751

Query: 121 ATAAAISEVGVVAEDDVEFANASMNSSPMSSKSDKIEDFGRDSSSNLLLEDDFPDIIDAD 167
           A  AAI+EVGVV + DV FA      SPMSSKSDK +DF  D  S LL EDDFPDIIDAD
Sbjct: 752 AATAAITEVGVVEKVDV-FA------SPMSSKSDKTDDFVHDLGSKLLQEDDFPDIIDAD 810

[Close]

BLAST of CsaV3_5G035490 vs. NCBI nr
Match: XP_023517165.1 (proline-, glutamic acid- and leucine-rich protein 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.3 bits (464), Expect = 6.6e-43
Identity = 113/186 (60.75%), Postives = 127/186 (68.28%), Query Frame = 0


Query: 1   MEVLIHPRVLPLSDFLPLRLSSPEPQAAFKFQEDLYFNSNDSRKLLKVGPQSMEQM---- 60
           MEVLIHPRVLPLSDFLP+RLSSPEPQA +KFQED+YF S  S KLLKV  Q MEQ     
Sbjct: 514 MEVLIHPRVLPLSDFLPVRLSSPEPQATYKFQEDMYFGSMTSSKLLKVDTQGMEQSDPEL 573

Query: 61  -------------ASEALISD---DVVDNNEMTYSTSNDIEKEPSANGIANIEMPKRTEQ 120
                          EA I D   + +++ EMTY+ SND+E EP ANG+ +IE PK TEQ
Sbjct: 574 DDEFSYDRVFANNIEEAPIRDATGNPINDYEMTYNISNDLENEPYANGLVSIETPKTTEQ 633

Query: 121 ATAAAISEVGVVAEDDVEFANASMNSSPMSSKSDKIEDFGRDSSSNLLLEDDFPDIIDAD 167
           A  AAI+EVGVV + DV FA      SPMSSKSDK +DF  D  S LL EDDFPDIIDAD
Sbjct: 634 AATAAITEVGVVEKVDV-FA------SPMSSKSDKTDDFVHDLGSKLLQEDDFPDIIDAD 692

[Close]

BLAST of CsaV3_5G035490 vs. TrEMBL
Match: tr|A0A1S3BFV9|A0A1S3BFV9_CUCME (proline-, glutamic acid- and leucine-rich protein 1 OS=Cucumis melo OX=3656 GN=LOC103489393 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 3.1e-73
Identity = 152/167 (91.02%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MEVLIHPRVLPLSDFLPLRLSSPEPQAAFKFQEDLYFNSNDSRKLLKVGPQSMEQMASEA 60
           MEVLIHPRVLPLSDFLPLRLSSPEPQAAFKFQEDLYFNSNDSRKLLKVG QSMEQ ASEA
Sbjct: 629 MEVLIHPRVLPLSDFLPLRLSSPEPQAAFKFQEDLYFNSNDSRKLLKVGTQSMEQRASEA 688

Query: 61  LISDDVVDNNEMTYSTSNDIEKEPSANGIANIEMPKRTEQATAAAISEVGVVAEDDVEFA 120
           LI DDV+DNNEMTYS SNDIE EPSAN +ANIE PKRTEQ TAAAISE GVVA+DDV FA
Sbjct: 689 LIRDDVLDNNEMTYSPSNDIENEPSANALANIERPKRTEQTTAAAISEEGVVAQDDVVFA 748

Query: 121 NASMNSSPMSSKSDKIEDFGRDSSSNLLLEDDFPDIIDADPDTDYEE 168
           NASMNSSP+SSKS KIEDFGRDSSSNLLLEDDFPDIIDADPDTDYEE
Sbjct: 749 NASMNSSPISSKSYKIEDFGRDSSSNLLLEDDFPDIIDADPDTDYEE 795

The following BLAST results are available for this feature:

BLAST of CsaV3_5G035490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446762.1	4.7e-73	91.02	PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 [Cucumis melo]	[more]
XP_022956971.1	3.0e-43	60.22	proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita m...	[more]
XP_022956977.1	3.0e-43	60.22	proline-, glutamic acid- and leucine-rich protein 1-like isoform X3 [Cucurbita m...	[more]
XP_023517133.1	6.6e-43	60.75	proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita p...	[more]
XP_023517165.1	6.6e-43	60.75	proline-, glutamic acid- and leucine-rich protein 1-like isoform X2 [Cucurbita p...	[more]

BLAST of CsaV3_5G035490 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G035490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G035490 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BFV9\|A0A1S3BFV9_CUCME	3.1e-73	91.02	proline-, glutamic acid- and leucine-rich protein 1 OS=Cucumis melo OX=3656 GN=L...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G035490.1	CsaV3_5G035490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..167

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G035490	Silver-seed gourd	carcucB0881
CsaV3_5G035490	Silver-seed gourd	carcucB1099
CsaV3_5G035490	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G035490	Cucumber (Gy14) v1	cgycucB441
CsaV3_5G035490	Cucurbita maxima (Rimu)	cmacucB0498
CsaV3_5G035490	Cucurbita maxima (Rimu)	cmacucB0885
CsaV3_5G035490	Cucurbita moschata (Rifu)	cmocucB0487
CsaV3_5G035490	Cucurbita moschata (Rifu)	cmocucB0874
CsaV3_5G035490	Cucurbita pepo (Zucchini)	cpecucB0043
CsaV3_5G035490	Cucurbita pepo (Zucchini)	cpecucB0543
CsaV3_5G035490	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G035490	Bottle gourd (USVL1VR-Ls)	cuclsiB393
CsaV3_5G035490	Melon (DHL92) v3.5.1	cucmeB381
CsaV3_5G035490	Melon (DHL92) v3.6.1	cucmedB375
CsaV3_5G035490	Watermelon (Charleston Gray)	cucwcgB415
CsaV3_5G035490	Watermelon (97103) v1	cucwmB428
CsaV3_5G035490	Watermelon (97103) v2	cucwmbB398
CsaV3_5G035490	Wax gourd	cucwgoB513