CsaV3_5G035420 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G035420
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	proline-, glutamic acid- and leucine-rich protein 1
Location	chr5 : 27963836 .. 27965634 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCTTCAATCTCGTTGCGGATATGTATGACCCGGCCTTGAAGCCTCGCTTGCTACATAAACTTCTTAGGGAGCACGTTCCCGACGATAAGCGTGCATTTTCTGATTATTCAGAACTTTCAAATGTGGTTTCTATGATCACATCCCACGATCTTCTCTCTGAATCCTCGTCTTCCAAGGACCAAAAGCTGATTGATAGCTGGAAATCCGCTGTTGATTCCTGGGTCAACCGTTTGTTTCTTCTTCTCTCCAACGATATGGTATAAGCATGCATTAAATTCTATTTAAATAATTTTTTTAATAATACATAGCTTTTGCTTTATACTCCCGTGGATTTGACTATTTGTCGGCTGCCGGGCTTATGTGTAGCTTGTTCGAAGAACAGCTGGAACGAAGTTCAGTGGAACTTGTTAAGTTTCATAATCAATGAGTTCGCTGCTGGTTATTGAGAGAAAATTTATAGTTAGTGTTAATCTAGAAAGTTTGTCGCCTTAGAGCGCCCTTTGCGCTTTGAAAACACCGTTTAATTCTTAGAAACTGAACATTTGAACCTTGCTTGCATATTTGGCAATTCATTGGCATGCAGGAAGATAGGGAATAATATTGACTGTCTTTATTACTTTGTTTTTTAGATATTGCTCAACTTCCTTTTGTGGGTTACTAATTTTAGCATCCAATCTTTCTAAAGCCTGATAAATGTTGGGCGGGAATCATTTTACTTGGAGTGACTTGTCAACGATGCAGCTCTAGTCGTTTCTTGGCATCATATACAGAATGGCTTCACAAGCTTTTACCTCACATGCAGGTAACAGTTAGTTTTTTATGGGATTGATTCTATATTATTTCTTTACATGTATTAAGTGGCAAAAATGTTAAATTATAGTGTACACATGAAGAAGAATAAGAGTTAAATGATAAGTTATTCCATCAGAACTAAGATACCGGTTACTGTTTGGGACACATAACTGCAATAATTCAACTATGCTTTTGAGCATGTGATGTGGCTGGATCGTCTTTGACAGTCGACCTGTTTGACTACAGTAAATATGTTTGTTCTGAAATTTGGGTATGATTGGTTGTAAGATATTCATCAAAATGAGTTCTGGACATTATTTGTGACAATAAGTGATTATTGTTTCTTGGAAAGAATGCAAAATCACGCATTGGGGGTTTCCAAGCTCTTATTCTTTTCATTAATATAGGATTGAACAAGTTAAGATAAACTACGGATGAAATAGCAGGTCTAACCAGCTCTCCTCGTACATGGGTCCCCAAAGACATGCATCGGCATGTATCTGATTAGCATAAGATAGCCTTTGGCAACACTTAATGATTGTGGAGCTACTGAAGGACCTAATGCACTGCTATTCTTGAGCATGGTTATCTGATATTTTATCAAGTGTTATACAAAGTGCAATTTTTTTTTCTTCTGAAGACACAAAAGAATATATTGATCACAAATAGTGTGTACGTAGTTCCAGAGCAATGTCAAGTTCCTTCTTTTTCTGTTCCTTTTATTTATATTGTTTCTGTCTTTAGCTTTACAACTTATAATCATCAATGCTTTTTTTATACTTGAATGCTACCAAGAATTTACAACGTTTTCATTTTTTGTGTTTTTATTGTTCAATAGACAGATTCTCAGTTTCTGAAGGTGGCCTCTTGTGCTTCAATCTATGATTTATTCTCGAGTACATCTTCATTTGACCTTGGCAGAAATCTATCACACGAAGTTGTCCCTCAAACACAACCCTTTTTTTTATTCGAAATGGTAACAATGTCATTGATAAGATGA

mRNA sequence

ATGGCGGCCTTCAATCTCGTTGCGGATATGTATGACCCGGCCTTGAAGCCTCGCTTGCTACATAAACTTCTTAGGGAGCACGTTCCCGACGATAAGCGTGCATTTTCTGATTATTCAGAACTTTCAAATGTGGTTTCTATGATCACATCCCACGATCTTCTCTCTGAATCCTCGTCTTCCAAGGACCAAAAGCTGATTGATAGCTGGAAATCCGCTGTTGATTCCTGGGTCAACCGTTTGTTTCTTCTTCTCTCCAACGATATGCCTGATAAATGTTGGGCGGGAATCATTTTACTTGGAGTGACTTGTCAACGATGCAGCTCTAGTCGTTTCTTGGCATCATATACAGAATGGCTTCACAAGCTTTTACCTCACATGCAGACAGATTCTCAGTTTCTGAAGGTGGCCTCTTGTGCTTCAATCTATGATTTATTCTCGAGTACATCTTCATTTGACCTTGGCAGAAATCTATCACACGAAGTTGTCCCTCAAACACAACCCTTTTTTTTATTCGAAATGGTAACAATGTCATTGATAAGATGA

Coding sequence (CDS)

ATGGCGGCCTTCAATCTCGTTGCGGATATGTATGACCCGGCCTTGAAGCCTCGCTTGCTACATAAACTTCTTAGGGAGCACGTTCCCGACGATAAGCGTGCATTTTCTGATTATTCAGAACTTTCAAATGTGGTTTCTATGATCACATCCCACGATCTTCTCTCTGAATCCTCGTCTTCCAAGGACCAAAAGCTGATTGATAGCTGGAAATCCGCTGTTGATTCCTGGGTCAACCGTTTGTTTCTTCTTCTCTCCAACGATATGCCTGATAAATGTTGGGCGGGAATCATTTTACTTGGAGTGACTTGTCAACGATGCAGCTCTAGTCGTTTCTTGGCATCATATACAGAATGGCTTCACAAGCTTTTACCTCACATGCAGACAGATTCTCAGTTTCTGAAGGTGGCCTCTTGTGCTTCAATCTATGATTTATTCTCGAGTACATCTTCATTTGACCTTGGCAGAAATCTATCACACGAAGTTGTCCCTCAAACACAACCCTTTTTTTTATTCGAAATGGTAACAATGTCATTGATAAGATGA

Protein sequence

MAAFNLVADMYDPALKPRLLHKLLREHVPDDKRAFSDYSELSNVVSMITSHDLLSESSSSKDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQRCSSSRFLASYTEWLHKLLPHMQTDSQFLKVASCASIYDLFSSTSSFDLGRNLSHEVVPQTQPFFLFEMVTMSLIR

Homology

[Close]

BLAST of CsaV3_5G035420 vs. NCBI nr
Match: XP_008446762.1 (PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 [Cucumis melo])

HSP 1 Score: 297.0 bits (759), Expect = 4.4e-77
Identity = 146/151 (96.69%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MAAFNLVADMYDPALKPRLLHKLLREHVPDDKRAFSDYSELSNVVSMITSHDLLSESSSS 60
           MAAFNLVADMYDPALKPRLLHKLLREHVPDDKRAFSDYSELSNVVSM+TSHDLLSESSSS
Sbjct: 1   MAAFNLVADMYDPALKPRLLHKLLREHVPDDKRAFSDYSELSNVVSMVTSHDLLSESSSS 60

Query: 61  KDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQRCSSSRFLASYTEWLH 120
           KDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQRCSSSRFLASYTEWLH
Sbjct: 61  KDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQRCSSSRFLASYTEWLH 120

Query: 121 KLLPHMQTDSQFLKVASCASIYDLFSSTSSF 152
           KLLPHMQTDSQFLKVASCASIYDLFS    F
Sbjct: 121 KLLPHMQTDSQFLKVASCASIYDLFSRLGRF 151

[Close]

BLAST of CsaV3_5G035420 vs. NCBI nr
Match: XP_022150576.1 (proline-, glutamic acid- and leucine-rich protein 1 isoform X1 [Momordica charantia])

HSP 1 Score: 270.4 bits (690), Expect = 4.4e-69
Identity = 133/151 (88.08%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MAAFNLVADMYDPALKPRLLHKLLREHVPDDKRAFSDYSELSNVVSMITSHDLLSESSSS 60
           MAAFNLVA+MYDPALKPRLLHKLLREHVPDDKR F D+SELSN VSMI  H+LLSESSSS
Sbjct: 1   MAAFNLVANMYDPALKPRLLHKLLREHVPDDKRTFHDHSELSNAVSMIKIHNLLSESSSS 60

Query: 61  KDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQRCSSSRFLASYTEWLH 120
           KDQKLIDSWKSAVDSWV+RLFLLLSNDMPDKCWAGIILLGVTCQ+CSSSRFLASYTEWL 
Sbjct: 61  KDQKLIDSWKSAVDSWVDRLFLLLSNDMPDKCWAGIILLGVTCQQCSSSRFLASYTEWLQ 120

Query: 121 KLLPHMQTDSQFLKVASCASIYDLFSSTSSF 152
           KLLPH+QTDSQFLKVA+CAS+ DLFS  S F
Sbjct: 121 KLLPHIQTDSQFLKVAACASVSDLFSRLSRF 151

[Close]

BLAST of CsaV3_5G035420 vs. NCBI nr
Match: XP_022956971.1 (proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita moschata] >XP_022956973.1 proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita moschata] >XP_022956974.1 proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita moschata] >XP_022956975.1 proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 266.2 bits (679), Expect = 8.4e-68
Identity = 131/151 (86.75%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 1   MAAFNLVADMYDPALKPRLLHKLLREHVPDDKRAFSDYSELSNVVSMITSHDLLSESSSS 60
           MAAFNLVA+MYDPALKPRL+HKLLREHVPDDKRAF+D+SELS VVSMI  H+LLSES  S
Sbjct: 1   MAAFNLVANMYDPALKPRLIHKLLREHVPDDKRAFNDHSELSKVVSMIKIHNLLSESLHS 60

Query: 61  KDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQRCSSSRFLASYTEWLH 120
            DQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQ+CSSSRFLASYTEWLH
Sbjct: 61  MDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQQCSSSRFLASYTEWLH 120

Query: 121 KLLPHMQTDSQFLKVASCASIYDLFSSTSSF 152
           +LLPH+QTDSQFLKVASCASI DLF     F
Sbjct: 121 RLLPHVQTDSQFLKVASCASISDLFLRLGRF 151

[Close]

BLAST of CsaV3_5G035420 vs. NCBI nr
Match: XP_022956976.1 (proline-, glutamic acid- and leucine-rich protein 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 266.2 bits (679), Expect = 8.4e-68
Identity = 131/151 (86.75%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 1   MAAFNLVADMYDPALKPRLLHKLLREHVPDDKRAFSDYSELSNVVSMITSHDLLSESSSS 60
           MAAFNLVA+MYDPALKPRL+HKLLREHVPDDKRAF+D+SELS VVSMI  H+LLSES  S
Sbjct: 1   MAAFNLVANMYDPALKPRLIHKLLREHVPDDKRAFNDHSELSKVVSMIKIHNLLSESLHS 60

Query: 61  KDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQRCSSSRFLASYTEWLH 120
            DQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQ+CSSSRFLASYTEWLH
Sbjct: 61  MDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQQCSSSRFLASYTEWLH 120

Query: 121 KLLPHMQTDSQFLKVASCASIYDLFSSTSSF 152
           +LLPH+QTDSQFLKVASCASI DLF     F
Sbjct: 121 RLLPHVQTDSQFLKVASCASISDLFLRLGRF 151

[Close]

BLAST of CsaV3_5G035420 vs. NCBI nr
Match: XP_023517133.1 (proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023517141.1 proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023517150.1 proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023517157.1 proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.2 bits (674), Expect = 3.2e-67
Identity = 129/151 (85.43%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MAAFNLVADMYDPALKPRLLHKLLREHVPDDKRAFSDYSELSNVVSMITSHDLLSESSSS 60
           MAAFNLV +MYDPALKPRL+HKLLREHVPDDKRAF+D+SELS VVSMI  H+LLSES  S
Sbjct: 1   MAAFNLVVNMYDPALKPRLIHKLLREHVPDDKRAFNDHSELSKVVSMIKIHNLLSESLPS 60

Query: 61  KDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQRCSSSRFLASYTEWLH 120
            DQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGI+LLGVTCQ+CSSSRFLASYTEWLH
Sbjct: 61  MDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIVLLGVTCQQCSSSRFLASYTEWLH 120

Query: 121 KLLPHMQTDSQFLKVASCASIYDLFSSTSSF 152
           +LLPH+QTDSQFLKVASCASI DLF     F
Sbjct: 121 RLLPHVQTDSQFLKVASCASISDLFLRLGRF 151

[Close]

BLAST of CsaV3_5G035420 vs. TAIR10
Match: AT1G30240.2 (unknown protein)

HSP 1 Score: 149.1 bits (375), Expect = 2.7e-36
Identity = 80/154 (51.95%), Postives = 104/154 (67.53%), Query Frame = 0


Query: 1   MAAFNLVADMYDPALKPRLLHKLLREHVPDDKRAFSDYSELSNVVSMITSHDLLSES-SS 60
           MA+F    DM D  LKP++L  LL E+VP++K+  +++  LS VVS I++H LLSES  +
Sbjct: 1   MASFERFDDMCDLRLKPKILRNLLSEYVPNEKQPLTNFLSLSKVVSTISTHKLLSESPPA 60

Query: 61  SKDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQRCSSSRFLASYTEWL 120
           S DQKL    KSAVD WV RL  L+S+DMPDK W GI L+GVTCQ CSS RF  SY+ W 
Sbjct: 61  SIDQKLHAKSKSAVDDWVARLSALISSDMPDKSWVGICLIGVTCQECSSDRFFKSYSVWF 120

Query: 121 HKLLPHMQ--TDSQFLKVASCASIYDLFSSTSSF 152
           + LL H++    S+ ++VASC SI DL +  S F
Sbjct: 121 NSLLSHLKNPASSRIVRVASCTSISDLLTRLSRF 154

[Close]

BLAST of CsaV3_5G035420 vs. TrEMBL
Match: tr|A0A1S3BFV9|A0A1S3BFV9_CUCME (proline-, glutamic acid- and leucine-rich protein 1 OS=Cucumis melo OX=3656 GN=LOC103489393 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.9e-77
Identity = 146/151 (96.69%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MAAFNLVADMYDPALKPRLLHKLLREHVPDDKRAFSDYSELSNVVSMITSHDLLSESSSS 60
           MAAFNLVADMYDPALKPRLLHKLLREHVPDDKRAFSDYSELSNVVSM+TSHDLLSESSSS
Sbjct: 1   MAAFNLVADMYDPALKPRLLHKLLREHVPDDKRAFSDYSELSNVVSMVTSHDLLSESSSS 60

Query: 61  KDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQRCSSSRFLASYTEWLH 120
           KDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQRCSSSRFLASYTEWLH
Sbjct: 61  KDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQRCSSSRFLASYTEWLH 120

Query: 121 KLLPHMQTDSQFLKVASCASIYDLFSSTSSF 152
           KLLPHMQTDSQFLKVASCASIYDLFS    F
Sbjct: 121 KLLPHMQTDSQFLKVASCASIYDLFSRLGRF 151

[Close]

BLAST of CsaV3_5G035420 vs. TrEMBL
Match: tr|A0A2P4IZP3|A0A2P4IZP3_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_45335 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.3e-48
Identity = 100/154 (64.94%), Postives = 121/154 (78.57%), Query Frame = 0


Query: 1   MAAFNLVADMYDPALKPRLLHKLLREHVPDDKRAFSDYSELSNVVSMITSHDLLSES-SS 60
           MAAFN   +MYD  +KPRLL  L++E VPDDK  F + +ELS VVS+I +H LLSES S 
Sbjct: 3   MAAFNYFKNMYDADMKPRLLRTLIKERVPDDKHPFENPAELSTVVSLIKTHGLLSESFSK 62

Query: 61  SKDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQRCSSSRFLASYTEWL 120
           S DQKL+D+WKSAVDSWV R+ +L+SN+MPDKCWAGI LLG+TCQ CSS RFLASYT W 
Sbjct: 63  STDQKLVDNWKSAVDSWVERVLVLVSNNMPDKCWAGICLLGLTCQECSSDRFLASYTLWF 122

Query: 121 HKLLPHMQT--DSQFLKVASCASIYDLFSSTSSF 152
           HKLLP++Q+  DS F+KVASCAS+ DLF+    F
Sbjct: 123 HKLLPYIQSPGDSHFVKVASCASVSDLFTRLGGF 156

[Close]

BLAST of CsaV3_5G035420 vs. TrEMBL
Match: tr|A0A2P5AM72|A0A2P5AM72_PARAD (Coatomer beta subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_318690 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.7e-46
Identity = 98/154 (63.64%), Postives = 118/154 (76.62%), Query Frame = 0


Query: 1   MAAFNLVADMYDPALKPRLLHKLLREHVPDDKRAFSDYSELSNVVSMITSHDLLSES-SS 60
           MAAF+L+++M D AL+PRLL  L+R+H+PDDK  F   S+LS VVSM+ +H+LLSES + 
Sbjct: 1   MAAFDLISNMNDVALRPRLLRTLIRDHLPDDKHPFGSPSQLSKVVSMVKTHNLLSESFAE 60

Query: 61  SKDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQRCSSSRFLASYTEWL 120
             DQ LI +WKSAVDSWV RL LL+SNDMPDKCWAGI LLGVTCQ CSS RFLASY++WL
Sbjct: 61  LTDQVLISNWKSAVDSWVKRLMLLISNDMPDKCWAGICLLGVTCQECSSDRFLASYSDWL 120

Query: 121 HKLLPHMQ--TDSQFLKVASCASIYDLFSSTSSF 152
            KLL H+Q    S F+KVASCAS+ DL      F
Sbjct: 121 QKLLSHIQVSASSHFVKVASCASMSDLLIRLGGF 154

[Close]

BLAST of CsaV3_5G035420 vs. TrEMBL
Match: tr|A0A2P5DBL9|A0A2P5DBL9_9ROSA (Coatomer beta subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_256250 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.5e-46
Identity = 99/154 (64.29%), Postives = 115/154 (74.68%), Query Frame = 0


Query: 1   MAAFNLVADMYDPALKPRLLHKLLREHVPDDKRAFSDYSELSNVVSMITSHDLLSES-SS 60
           MAAF+L+++M D AL+PRLL  L+R+H+PDDK  F   S+LS VVSM+ +H LLSES   
Sbjct: 1   MAAFDLISNMNDVALRPRLLRTLIRDHLPDDKHPFGSPSQLSKVVSMVKTHSLLSESFDE 60

Query: 61  SKDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQRCSSSRFLASYTEWL 120
             DQ LI  WKSAVDSWV RL LL+SNDMPDKCWAGI LLGVTCQ CSS RFLASY++WL
Sbjct: 61  LTDQVLISKWKSAVDSWVKRLMLLVSNDMPDKCWAGICLLGVTCQECSSDRFLASYSDWL 120

Query: 121 HKLLPHMQTD--SQFLKVASCASIYDLFSSTSSF 152
            KLL H+Q    S F+KVASCASI DL      F
Sbjct: 121 QKLLSHIQVSATSHFVKVASCASISDLLIRLGGF 154

[Close]

BLAST of CsaV3_5G035420 vs. TrEMBL
Match: tr|A0A2N9GMT0|A0A2N9GMT0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28757 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.3e-45
Identity = 98/154 (63.64%), Postives = 119/154 (77.27%), Query Frame = 0


Query: 1   MAAFNLVADMYDPALKPRLLHKLLREHVPDDKRAFSDYSELSNVVSMITSHDLLSES-SS 60
           MAAFN   +MYD A+KPRLL  L++E VPD+   F + +ELS VVSMI +H LLSES   
Sbjct: 1   MAAFNHFKNMYDVAMKPRLLRTLIKERVPDETHPFENPAELSTVVSMIKTHGLLSESFGE 60

Query: 61  SKDQKLIDSWKSAVDSWVNRLFLLLSNDMPDKCWAGIILLGVTCQRCSSSRFLASYTEWL 120
           S DQKLI++WKSAVDSW  RL LL+SN+MPDK WAGI LLGVTCQ CSS RFLASY+ W 
Sbjct: 61  STDQKLIENWKSAVDSWFERLLLLVSNNMPDKRWAGICLLGVTCQECSSDRFLASYSLWF 120

Query: 121 HKLLPHMQT--DSQFLKVASCASIYDLFSSTSSF 152
           ++LLP++Q+  DSQF+KVASCAS+ DLF+    F
Sbjct: 121 NRLLPYIQSPGDSQFVKVASCASVSDLFTRLGGF 154

The following BLAST results are available for this feature:

BLAST of CsaV3_5G035420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446762.1	4.4e-77	96.69	PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 [Cucumis melo]	[more]
XP_022150576.1	4.4e-69	88.08	proline-, glutamic acid- and leucine-rich protein 1 isoform X1 [Momordica charan...	[more]
XP_022956971.1	8.4e-68	86.75	proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita m...	[more]
XP_022956976.1	8.4e-68	86.75	proline-, glutamic acid- and leucine-rich protein 1-like isoform X2 [Cucurbita m...	[more]
XP_023517133.1	3.2e-67	85.43	proline-, glutamic acid- and leucine-rich protein 1-like isoform X1 [Cucurbita p...	[more]

BLAST of CsaV3_5G035420 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30240.2	2.7e-36	51.95	unknown protein	[more]

BLAST of CsaV3_5G035420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G035420 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BFV9\|A0A1S3BFV9_CUCME	2.9e-77	96.69	proline-, glutamic acid- and leucine-rich protein 1 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A2P4IZP3\|A0A2P4IZP3_QUESU	1.3e-48	64.94	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_45335 PE=4 SV=1	[more]
tr\|A0A2P5AM72\|A0A2P5AM72_PARAD	2.7e-46	63.64	Coatomer beta subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_318690 PE=4...	[more]
tr\|A0A2P5DBL9\|A0A2P5DBL9_9ROSA	3.5e-46	64.29	Coatomer beta subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_256250 PE=4 SV=...	[more]
tr\|A0A2N9GMT0\|A0A2N9GMT0_FAGSY	2.3e-45	63.64	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28757 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012583	RIX1_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G035420.1	CsaV3_5G035420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012583	Pre-rRNA-processing protein RIX1, N-terminal	PFAM	PF08167	RIX1	coord: 17..151 e-value: 3.7E-27 score: 95.2
None	No IPR available	PANTHER	PTHR34105	FAMILY NOT NAMED	coord: 1..162

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G035420	CmaCh18G009470	Cucurbita maxima (Rimu)	cmacucB0498
CsaV3_5G035420	CmaCh04G014330	Cucurbita maxima (Rimu)	cmacucB0885
CsaV3_5G035420	Cp4.1LG09g03660	Cucurbita pepo (Zucchini)	cpecucB0043
CsaV3_5G035420	Carg01905	Silver-seed gourd	carcucB0881
CsaV3_5G035420	Carg18991	Silver-seed gourd	carcucB1099
CsaV3_5G035420	Bhi07G000639	Wax gourd	cucwgoB513

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G035420	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G035420	Cucumber (Gy14) v1	cgycucB441
CsaV3_5G035420	Cucurbita moschata (Rifu)	cmocucB0487
CsaV3_5G035420	Cucurbita moschata (Rifu)	cmocucB0874
CsaV3_5G035420	Cucurbita pepo (Zucchini)	cpecucB0543
CsaV3_5G035420	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G035420	Bottle gourd (USVL1VR-Ls)	cuclsiB393
CsaV3_5G035420	Melon (DHL92) v3.5.1	cucmeB381
CsaV3_5G035420	Melon (DHL92) v3.6.1	cucmedB375
CsaV3_5G035420	Watermelon (Charleston Gray)	cucwcgB415
CsaV3_5G035420	Watermelon (97103) v1	cucwmB428
CsaV3_5G035420	Watermelon (97103) v2	cucwmbB398