CsaV3_5G033510 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G033510
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 26807164 .. 26807591 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGACGAGAAAGAGAATTTGTGTTGGTCAATTATAAAGTCTTTCATTAATTGCTTACTTGGCCTCAACGATGGAAATGCTGACGCATCCAACGCTGCAGTGTCTCCATCGGGGCCAGAGGCCGCCATGGTGGCTGCAGCAAAGCATTTCTCTTCTGCTCACAAGGTTCAGTTCAGCTAGTTTAGTGTTCATTTAGAAGTCCATGTGGCTGATGTCTACTACTCCATACATGCTTGAGCAAGACACGGTCCTCTGCAGCTTAACCAACATCCATCAGTTCTCAATTTCATCACGTGTCAAAAGTTACGAGTAATGTTTTATGTAGTTCTGAACAGTTTGGGTACCTGAAATCTTGGCTTGACTTGGTTGTCAAGCATGAAAGGCGCAGGTCATCAAGTTATGTAATGTCAAATACCCCCTGTTAA

mRNA sequence

ATGGGAGACGAGAAAGAGAATTTGTGTTGGTCAATTATAAAGTCTTTCATTAATTGCTTACTTGGCCTCAACGATGGAAATGCTGACGCATCCAACGCTGCAGTGTCTCCATCGGGGCCAGAGGCCGCCATGGTGGCTGCAGCAAAGCATTTCTCTTCTGCTCACAAGTTTGGGTACCTGAAATCTTGGCTTGACTTGGTTGTCAAGCATGAAAGGCGCAGGTCATCAAGTTATGTAATGTCAAATACCCCCTGTTAA

Coding sequence (CDS)

ATGGGAGACGAGAAAGAGAATTTGTGTTGGTCAATTATAAAGTCTTTCATTAATTGCTTACTTGGCCTCAACGATGGAAATGCTGACGCATCCAACGCTGCAGTGTCTCCATCGGGGCCAGAGGCCGCCATGGTGGCTGCAGCAAAGCATTTCTCTTCTGCTCACAAGTTTGGGTACCTGAAATCTTGGCTTGACTTGGTTGTCAAGCATGAAAGGCGCAGGTCATCAAGTTATGTAATGTCAAATACCCCCTGTTAA

Protein sequence

MGDEKENLCWSIIKSFINCLLGLNDGNADASNAAVSPSGPEAAMVAAAKHFSSAHKFGYLKSWLDLVVKHERRRSSSYVMSNTPC
Homology
[Close]
BLAST of CsaV3_5G033510 vs. NCBI nr
Match: KGN51999.1 (hypothetical protein Csa_5G606890 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 1.9e-41
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MGDEKENLCWSIIKSFINCLLGLNDGNADASNAAVSPSGPEAAMVAAAKHFSSAHKFGYL 60
          MGDEKENLCWSIIKSFINCLLGLNDGNADASNAAVSPSGPEAAMVAAAKHFSSAHKFGYL
Sbjct: 1  MGDEKENLCWSIIKSFINCLLGLNDGNADASNAAVSPSGPEAAMVAAAKHFSSAHKFGYL 60

Query: 61 KSWLDLVVKHERRRSSSYVMSNTPC 86
          KSWLDLVVKHERRRSSSYVMSNTPC
Sbjct: 61 KSWLDLVVKHERRRSSSYVMSNTPC 85

[Close]
BLAST of CsaV3_5G033510 vs. TrEMBL
Match: tr|A0A0A0KT12|A0A0A0KT12_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606890 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-41
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MGDEKENLCWSIIKSFINCLLGLNDGNADASNAAVSPSGPEAAMVAAAKHFSSAHKFGYL 60
          MGDEKENLCWSIIKSFINCLLGLNDGNADASNAAVSPSGPEAAMVAAAKHFSSAHKFGYL
Sbjct: 1  MGDEKENLCWSIIKSFINCLLGLNDGNADASNAAVSPSGPEAAMVAAAKHFSSAHKFGYL 60

Query: 61 KSWLDLVVKHERRRSSSYVMSNTPC 86
          KSWLDLVVKHERRRSSSYVMSNTPC
Sbjct: 61 KSWLDLVVKHERRRSSSYVMSNTPC 85

The following BLAST results are available for this feature:
BLAST of CsaV3_5G033510 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51999.11.9e-41100.00hypothetical protein Csa_5G606890 [Cucumis sativus][more]
BLAST of CsaV3_5G033510 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G033510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G033510 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KT12|A0A0A0KT12_CUCSA1.2e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606890 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G033510.1CsaV3_5G033510.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G033510CSPI05G24500Wild cucumber (PI 183967)cpicucB284
CsaV3_5G033510Cp4.1LG09g02390Cucurbita pepo (Zucchini)cpecucB0043
CsaV3_5G033510CsGy5G023990Cucumber (Gy14) v2cgybcucB232
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G033510Cucumber (Chinese Long) v3cuccucB034
CsaV3_5G033510Silver-seed gourdcarcucB0117
CsaV3_5G033510Silver-seed gourdcarcucB0499
CsaV3_5G033510Silver-seed gourdcarcucB0633
CsaV3_5G033510Silver-seed gourdcarcucB0881
CsaV3_5G033510Cucumber (Gy14) v2cgybcucB037
CsaV3_5G033510Cucumber (Gy14) v1cgycucB441
CsaV3_5G033510Cucurbita maxima (Rimu)cmacucB0095
CsaV3_5G033510Cucurbita maxima (Rimu)cmacucB0155
CsaV3_5G033510Cucurbita pepo (Zucchini)cpecucB0221
CsaV3_5G033510Cucurbita maxima (Rimu)cmacucB0498
CsaV3_5G033510Cucurbita maxima (Rimu)cmacucB0889
CsaV3_5G033510Cucurbita moschata (Rifu)cmocucB0085
CsaV3_5G033510Cucurbita moschata (Rifu)cmocucB0354
CsaV3_5G033510Cucurbita moschata (Rifu)cmocucB0487
CsaV3_5G033510Cucurbita moschata (Rifu)cmocucB0877
CsaV3_5G033510Cucurbita pepo (Zucchini)cpecucB0463
CsaV3_5G033510Cucurbita pepo (Zucchini)cpecucB0546
CsaV3_5G033510Cucurbita pepo (Zucchini)cpecucB0852
CsaV3_5G033510Wild cucumber (PI 183967)cpicucB042
CsaV3_5G033510Bottle gourd (USVL1VR-Ls)cuclsiB367
CsaV3_5G033510Bottle gourd (USVL1VR-Ls)cuclsiB384
CsaV3_5G033510Bottle gourd (USVL1VR-Ls)cuclsiB393
CsaV3_5G033510Bottle gourd (USVL1VR-Ls)cuclsiB406
CsaV3_5G033510Melon (DHL92) v3.5.1cucmeB381
CsaV3_5G033510Melon (DHL92) v3.5.1cucmeB401
CsaV3_5G033510Melon (DHL92) v3.6.1cucmedB375
CsaV3_5G033510Melon (DHL92) v3.6.1cucmedB394
CsaV3_5G033510Watermelon (Charleston Gray)cucwcgB420
CsaV3_5G033510Watermelon (Charleston Gray)cucwcgB380
CsaV3_5G033510Watermelon (Charleston Gray)cucwcgB415
CsaV3_5G033510Watermelon (97103) v1cucwmB401
CsaV3_5G033510Watermelon (97103) v1cucwmB428
CsaV3_5G033510Watermelon (97103) v1cucwmB466
CsaV3_5G033510Watermelon (97103) v2cucwmbB398
CsaV3_5G033510Watermelon (97103) v2cucwmbB406
CsaV3_5G033510Watermelon (97103) v2cucwmbB419
CsaV3_5G033510Wax gourdcucwgoB486
CsaV3_5G033510Wax gourdcucwgoB523
CsaV3_5G033510Wax gourdcucwgoB538