CsaV3_5G029890 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G029890
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 24698745 .. 24699071 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATCAGAGGTTGGTTGGTGGCCGTCGAAAGTGGTGATCAAAGATCGGTAATTGACTATAAAAGGTTTGTCAATGGAGTCACTAGAGGTGGTGGGTGGAGATTGGCCAACGACGATCATCGAAGGTGGTGTTCAAAAGTTGATCGACCAACATTTCAACCCGTAAAACAAATACTCCTTAGAGTTGAAGAATAGTAAGAACACATGATTAGTTATTTTAAATCCTAGTCCTAATCCGTAACTAGACCTAAGCATTGTTCTCAAACATACCCTTAATGTTCTAATACGAGCCATGCTCAAATTGTCGATTTTAATATATTAGAA

mRNA sequence

ATGGCGATCAGAGGTTGGTTGGTGGCCGTCGAAAGTGGTGATCAAAGATCGGTAATTGACTATAAAAGGTTTGTCAATGGAGTCACTAGAGGTGGTGGGTGGAGATTGGCCAACGACGATCATCGAAGGTGGTGTTCAAAAGTTGATCGACCAACATTTCAACCCGTAAAACAAATACTCCTTAGAGTTGAAGAATAG

Coding sequence (CDS)

ATGGCGATCAGAGGTTGGTTGGTGGCCGTCGAAAGTGGTGATCAAAGATCGGTAATTGACTATAAAAGGTTTGTCAATGGAGTCACTAGAGGTGGTGGGTGGAGATTGGCCAACGACGATCATCGAAGGTGGTGTTCAAAAGTTGATCGACCAACATTTCAACCCGTAAAACAAATACTCCTTAGAGTTGAAGAATAG

Protein sequence

MAIRGWLVAVESGDQRSVIDYKRFVNGVTRGGGWRLANDDHRRWCSKVDRPTFQPVKQILLRVEE
Homology
[Close]
BLAST of CsaV3_5G029890 vs. NCBI nr
Match: KGN51639.1 (hypothetical protein Csa_5G587100 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 5.1e-31
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MAIRGWLVAVESGDQRSVIDYKRFVNGVTRGGGWRLANDDHRRWCSKVDRPTFQPVKQIL 60
          MAIRGWLVAVESGDQRSVIDYKRFVNGVTRGGGWRLANDDHRRWCSKVDRPTFQPVKQIL
Sbjct: 1  MAIRGWLVAVESGDQRSVIDYKRFVNGVTRGGGWRLANDDHRRWCSKVDRPTFQPVKQIL 60

Query: 61 LRVEE 66
          LRVEE
Sbjct: 61 LRVEE 65

[Close]
BLAST of CsaV3_5G029890 vs. TrEMBL
Match: tr|A0A0A0KRX7|A0A0A0KRX7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G587100 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.4e-31
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MAIRGWLVAVESGDQRSVIDYKRFVNGVTRGGGWRLANDDHRRWCSKVDRPTFQPVKQIL 60
          MAIRGWLVAVESGDQRSVIDYKRFVNGVTRGGGWRLANDDHRRWCSKVDRPTFQPVKQIL
Sbjct: 1  MAIRGWLVAVESGDQRSVIDYKRFVNGVTRGGGWRLANDDHRRWCSKVDRPTFQPVKQIL 60

Query: 61 LRVEE 66
          LRVEE
Sbjct: 61 LRVEE 65

The following BLAST results are available for this feature:
BLAST of CsaV3_5G029890 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51639.15.1e-31100.00hypothetical protein Csa_5G587100 [Cucumis sativus][more]
BLAST of CsaV3_5G029890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G029890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G029890 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KRX7|A0A0A0KRX7_CUCSA3.4e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G587100 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G029890.1CsaV3_5G029890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G029890CSPI05G21210Wild cucumber (PI 183967)cpicucB301
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G029890Silver-seed gourdcarcucB0156
CsaV3_5G029890Silver-seed gourdcarcucB0730
CsaV3_5G029890Silver-seed gourdcarcucB0760
CsaV3_5G029890Cucumber (Gy14) v2cgybcucB232
CsaV3_5G029890Cucumber (Gy14) v1cgycucB076
CsaV3_5G029890Cucurbita maxima (Rimu)cmacucB0495
CsaV3_5G029890Cucurbita maxima (Rimu)cmacucB0499
CsaV3_5G029890Wax gourdcucwgoB471
CsaV3_5G029890Cucurbita maxima (Rimu)cmacucB0886
CsaV3_5G029890Cucurbita moschata (Rifu)cmocucB0488
CsaV3_5G029890Cucurbita moschata (Rifu)cmocucB0489
CsaV3_5G029890Cucurbita moschata (Rifu)cmocucB0875
CsaV3_5G029890Cucurbita pepo (Zucchini)cpecucB0044
CsaV3_5G029890Cucurbita pepo (Zucchini)cpecucB0051
CsaV3_5G029890Cucurbita pepo (Zucchini)cpecucB0544
CsaV3_5G029890Wild cucumber (PI 183967)cpicucB284
CsaV3_5G029890Wild cucumber (PI 183967)cpicucB297
CsaV3_5G029890Bottle gourd (USVL1VR-Ls)cuclsiB393
CsaV3_5G029890Melon (DHL92) v3.5.1cucmeB380
CsaV3_5G029890Melon (DHL92) v3.5.1cucmeB381
CsaV3_5G029890Melon (DHL92) v3.6.1cucmedB372
CsaV3_5G029890Melon (DHL92) v3.6.1cucmedB373
CsaV3_5G029890Melon (DHL92) v3.6.1cucmedB374
CsaV3_5G029890Melon (DHL92) v3.6.1cucmedB375
CsaV3_5G029890Melon (DHL92) v3.6.1cucmedB385
CsaV3_5G029890Watermelon (Charleston Gray)cucwcgB375
CsaV3_5G029890Watermelon (97103) v1cucwmB458
CsaV3_5G029890Watermelon (97103) v2cucwmbB373