CsaV3_5G029870 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G029870
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptiontranscription termination factor MTERF8, chloroplastic-like
Locationchr5 : 24688499 .. 24690688 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACATTTATTTCATATTATATAATATTGTAAGAGAAACGCCCAAATTTGTGGCGTTCGAATTCAAAACCATAAACCAAAACCCTTACTTGAATTTCTTCAATCCAAACCCCAAATGTTCAAATTTTCATCCACATTTCTTCTTCATTTCATCCATAAACGTTCTCTCAATACCATTTCTACTTCTACATTGCCTTCACCCTCTGTTTCTACCATCCAATTCCTCACTAATTCATGTGGCCTGTCTTCTGGATCTCTTACTTCCAATGGTCGAAAGCTCCGGTTCGATGAAAAACACATTCAGCAGTACGAAGCCATTATCGGTTTCTTCAAATCTCATGGATTCGAGAATTCACAGATCGCCAATTTGGTCTCGAGGCGACCTTCGATCCTTCAATCTAGAGTATCCACCAATCTGAAGCCTAAATTTGAGTTCCTCCAGGAAATCGGGTTCGTCGGTCCTTTACTTTTAAAGTTAATTTTATCAACACCATGGGTTCTTGGCAGCAGCTTAGTTTCTCAGTTGAAACCATCATTTTTTTTCATGAAGGAAATTCTAGAATCGGATGAACAAGTAACTGCTGCTATTTGTCGTTCTCCAAGGCTTCTGATTTGTGATTTGAAGGGTAATTTTAAATCTAGCGCTGATGTTTTGGCCAGTGAAGGAGTACCTTCTAGGAATATAACGAAAATGATTACATTGAACCCTAGAACTTTTATGCAAAAGGCTGATAGAGTGATTGGTGCAGTGAAAACGGTTAAAGAATTAGGCATTGAACCAAAGGCTCGCATGTTTATTTATGCACTTTTTGTAAGGCTTTCAATGAATGATTCAACTTGGAAGAAGAAAATAAATGTTATGGAGAGTTTAGGATGGTCTGAGAAGGAGATTTTTTAGAGATTTCCATTTTATTTAACATGTTCAGAGGAGAAATTGAGGGATGTTGCAGATTTCTGTTCCAACACTGCAAAGTTAGATCCAGGAACTCTAATATCTTACCCTGTGTTATTCAAGTATTCAGTCGACAAGTGGCTCCAACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAGATCTTCTTAAAATCAAAAAGATTGCTTCGGTATTTGTGAAAGGGGAGAGAATTTTTGTGGAGAAATATGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACCGGGGCAATGTTGCAAGTTAATAATGTTCTTAAAGTTCAAAATTTGAGCATCATGATCTTCAAAGGGGGATAGCTTTTTTGTTGTTATTAAGACTACTGTTTCTTCTTGAGCTTTTCAAGATCTCTCCCCCTGTTTTCTGGTGGGAGAGTTGTGTTGTTTTTGCATCCAAACTAAGGCAGTTAGTTGGGTAAATCTATTTGGTGTATATTTCTTCATAGACATTTTAATCTTGAAATTGGAGGCCTTCTTGTTTTTTCCTTTCCTAATCTTTTAGTCATTCCTTGAACTTTTGTAAGCCTGTAGACTAATTTTGAAACCAACGATGAGGTTGAAATGGGATGAGAGACATGAAAGTTGTAGGTAAAGCTTATGCTTTTGTGTTTGTAAGGTAGAGGAGAATTGAATAAAATATTGTAGTTGAAGGAAGGGATGTAATACAAATACATTTCCATTTCCCCATATTTCTTTTGCTATTCCAAATAACAATCTTATTATTTTCACGAAATTTTCATAAATATAACACCCTGGAAATTGGCTTGTTTTTCAATTTTTTCTCAAAAAGTAAACAATTATAGAATGATTGCAAATGTAATGGGTAGTAATGTTCTTACCTATTCTTATTGACTCGACTGATCTACCAGACATGGAAAAGGCAAGAGGAAAATAGGAAAGGCAGGTGGAAATTGCCAACAACTTGAAGGTGAGGTTTGTATAGTAATATCCTAGAACAATTAGACTGCTTTCTTGATTGAGTTTTATATCAAGTCTGATTGGTGCTGATAAAGTTGTCTAAGCTTGGCATTTTTAAGCTGGCACTTATACATTTGTCTGCTCTCTCATTAGCTCCTCGAGAATGGTCTTTGGCAAGTGCCAGAAAAGCTTCATCTAAACAAGATGAAAACAGAGCATCTGAAAGATGATTCTGCTCTAGATGCGCTAACACAGTCATCTGAAACAAGACAGAGCATATGGAAGCAGCAGCACCACGGGGAAGCTGGATGA

mRNA sequence

ATGTTCAAATTTTCATCCACATTTCTTCTTCATTTCATCCATAAACGTTCTCTCAATACCATTTCTACTTCTACATTGCCTTCACCCTCTGTTTCTACCATCCAATTCCTCACTAATTCATGTGGCCTGTCTTCTGGATCTCTTACTTCCAATGGTCGAAAGCTCCGGTTCGATGAAAAACACATTCAGCAGTACGAAGCCATTATCGGTTTCTTCAAATCTCATGGATTCGAGAATTCACAGATCGCCAATTTGGTCTCGAGGCGACCTTCGATCCTTCAATCTAGAGTATCCACCAATCTGAAGCCTAAATTTGAGTTCCTCCAGGAAATCGGGTTCGTCGGTCCTTTACTTTTAAAGTTAATTTTATCAACACCATGGGTTCTTGGCAGCAGCTTAGTTTCTCAGTTGAAACCATCATTTTTTTTCATGAAGGAAATTCTAGAATCGGATGAACAAGTAACTGCTGCTATTTGTCGTTCTCCAAGGCTTCTGATTTGTGATTTGAAGGGTAATTTTAAATCTAGCGCTGATGTTTTGGCCAGTGAAGGAGTACCTTCTAGGAATATAACGAAAATGATTACATTGAACCCTAGAACTTTTATGCAAAAGGCTGATAGAGTGATTGGTGCAGTGAAAACGGTTAAAGAATTAGGCATTGAACCAAAGGCTCGCATGTTTATTTATGCACTTTTTTCGACAAGTGGCTCCAACCGAGGTACAAAGTTCTTGAGACATGGAAAAGGCAAGAGGAAAATAGGAAAGGCAGGTGGAAATTGCCAACAACTTGAAGGTGAGCTCCTCGAGAATGGTCTTTGGCAAGTGCCAGAAAAGCTTCATCTAAACAAGATGAAAACAGAGCATCTGAAAGATGATTCTGCTCTAGATGCGCTAACACAGTCATCTGAAACAAGACAGAGCATATGGAAGCAGCAGCACCACGGGGAAGCTGGATGA

Coding sequence (CDS)

ATGTTCAAATTTTCATCCACATTTCTTCTTCATTTCATCCATAAACGTTCTCTCAATACCATTTCTACTTCTACATTGCCTTCACCCTCTGTTTCTACCATCCAATTCCTCACTAATTCATGTGGCCTGTCTTCTGGATCTCTTACTTCCAATGGTCGAAAGCTCCGGTTCGATGAAAAACACATTCAGCAGTACGAAGCCATTATCGGTTTCTTCAAATCTCATGGATTCGAGAATTCACAGATCGCCAATTTGGTCTCGAGGCGACCTTCGATCCTTCAATCTAGAGTATCCACCAATCTGAAGCCTAAATTTGAGTTCCTCCAGGAAATCGGGTTCGTCGGTCCTTTACTTTTAAAGTTAATTTTATCAACACCATGGGTTCTTGGCAGCAGCTTAGTTTCTCAGTTGAAACCATCATTTTTTTTCATGAAGGAAATTCTAGAATCGGATGAACAAGTAACTGCTGCTATTTGTCGTTCTCCAAGGCTTCTGATTTGTGATTTGAAGGGTAATTTTAAATCTAGCGCTGATGTTTTGGCCAGTGAAGGAGTACCTTCTAGGAATATAACGAAAATGATTACATTGAACCCTAGAACTTTTATGCAAAAGGCTGATAGAGTGATTGGTGCAGTGAAAACGGTTAAAGAATTAGGCATTGAACCAAAGGCTCGCATGTTTATTTATGCACTTTTTTCGACAAGTGGCTCCAACCGAGGTACAAAGTTCTTGAGACATGGAAAAGGCAAGAGGAAAATAGGAAAGGCAGGTGGAAATTGCCAACAACTTGAAGGTGAGCTCCTCGAGAATGGTCTTTGGCAAGTGCCAGAAAAGCTTCATCTAAACAAGATGAAAACAGAGCATCTGAAAGATGATTCTGCTCTAGATGCGCTAACACAGTCATCTGAAACAAGACAGAGCATATGGAAGCAGCAGCACCACGGGGAAGCTGGATGA

Protein sequence

MFKFSSTFLLHFIHKRSLNTISTSTLPSPSVSTIQFLTNSCGLSSGSLTSNGRKLRFDEKHIQQYEAIIGFFKSHGFENSQIANLVSRRPSILQSRVSTNLKPKFEFLQEIGFVGPLLLKLILSTPWVLGSSLVSQLKPSFFFMKEILESDEQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFMQKADRVIGAVKTVKELGIEPKARMFIYALFSTSGSNRGTKFLRHGKGKRKIGKAGGNCQQLEGELLENGLWQVPEKLHLNKMKTEHLKDDSALDALTQSSETRQSIWKQQHHGEAG
Homology
[Close]
BLAST of CsaV3_5G029870 vs. NCBI nr
Match: XP_011655553.1 (PREDICTED: uncharacterized protein LOC101217091 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 1.4e-57
Identity = 172/231 (74.46%), Postives = 184/231 (79.65%), Query Frame = 0 

Query: 1   MFKFSSTFLLHFIHKRSLNTISTSTLPSPSVSTIQFLTNSCGLSSGSLTSNGRKLRFDEK 60
           MFKFSSTFLLHFIHKRSLNT+STSTLP PSVSTIQFLTNSCGLSSGS TS+GRKL+FDEK
Sbjct: 1   MFKFSSTFLLHFIHKRSLNTLSTSTLPLPSVSTIQFLTNSCGLSSGSPTSHGRKLQFDEK 60

Query: 61  HIQQYEAIIGFFKSHGFENSQIANLVSRRPSILQSRVSTNLKPKFEXXXXXXXXXXXXXX 120
           +IQQYEAI+GFFKSHGFENSQIA LVS++PSILQS+VS NLKPKF XXXXXXXXXXXXXX
Sbjct: 61  NIQQYEAIVGFFKSHGFENSQIAKLVSKQPSILQSKVSNNLKPKFXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXX                               DVL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXMLEPDEKVTTAICRYSRLLTCNIKGNFKSIVDVL 180

Query: 181 ASEGVPSRNITKMITLNPRTFMQKADRVIGAVKTVKELGIEPKARMFIYAL 232
            SEGVPS+NI KMI   P T M K DR I AVKTVKELGIEP+ARMF+YA+
Sbjct: 181 VSEGVPSKNIAKMIAYKPTTIMHKVDRTIHAVKTVKELGIEPEARMFVYAV 231

[Close]
BLAST of CsaV3_5G029870 vs. NCBI nr
Match: XP_011655534.1 (PREDICTED: uncharacterized protein LOC101219264 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 2.6e-56
Identity = 179/242 (73.97%), Postives = 186/242 (76.86%), Query Frame = 0 

Query: 1   MFKFSSTFLLHFIHKRSLNTISTSTLPSPSVSTIQFLTNSCGLSSGSLTSNGRKLRFDEK 60
           M K SST LLHFIHKR LNTISTSTLPSPS+STIQFLTNSCGLSSGS TS GRKL FDEK
Sbjct: 1   MSKISSTLLLHFIHKRFLNTISTSTLPSPSLSTIQFLTNSCGLSSGSPTSAGRKLHFDEK 60

Query: 61  HIQQYEAIIGFFKSHGFENSQIANLVSRRPSILQSRVSTNLKPKFE-XXXXXXXXXXXXX 120
           HI QY AIIGFFKSHGFE  QI+NL+SRRPSILQSRVSTNLKPKFE XXXXXXXXXXXXX
Sbjct: 61  HIHQYGAIIGFFKSHGFEYPQISNLISRRPSILQSRVSTNLKPKFEXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADV 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXX                              +D+
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXLESDEQVTAAVIYRFPSLLISDWRGNFKSSSDI 180

Query: 181 LASEGVPSRNITKMITLNPRTFMQKADRVIGAVKTVKELGIEPKARMFIYALFSTSGSNR 240
           LASEGVPSRNI KMI LNPRTFMQKA  +I  V+TVKELG EPKARMFIYALF     N 
Sbjct: 181 LASEGVPSRNIKKMIALNPRTFMQKA--LIQVVQTVKELGFEPKARMFIYALFVRLSMND 240

Query: 241 GT 242
            T
Sbjct: 241 ST 240

[Close]
BLAST of CsaV3_5G029870 vs. NCBI nr
Match: XP_004135534.2 (PREDICTED: uncharacterized protein LOC101204518 [Cucumis sativus] >XP_011655533.1 PREDICTED: uncharacterized protein LOC101204518 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 5.8e-56
Identity = 177/241 (73.44%), Postives = 189/241 (78.42%), Query Frame = 0 

Query: 1   MFKFSSTFLLHFIHKRSLNTISTSTLPSPSVSTIQFLTNSCGLSSGSLTSNGRKLRFDEK 60
           MFK SSTFLLHFIHKR LNTISTSTLP  SVSTIQFLTNSCGLSSGS +SNGR L+FD+K
Sbjct: 1   MFKISSTFLLHFIHKRFLNTISTSTLPLRSVSTIQFLTNSCGLSSGSPSSNGRMLQFDDK 60

Query: 61  HIQQYEAIIGFFKSHGFENSQIANLVSRRPSILQSRVSTNLKPKFEXXXXXXXXXXXXXX 120
            IQQYE++IGF KSHGF+N QIANLVSRRP+IL SRVSTNLKPKFEXXXXXXXXXXXXXX
Sbjct: 61  SIQQYESVIGFLKSHGFDNLQIANLVSRRPNILGSRVSTNLKPKFEXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX                             DVL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXESDERVIAAICSSSWLLTYDFERVIKPNVDVL 180

Query: 181 ASEGVPSRNITKMITLNPRTFMQKADRVIGAVKTVKELGIEPKARMFIYAL---FSTSGS 239
           ASEGVPSRNI K+I L+PRT MQK DR+I AVKT KELGIEPK+ MFIYA+    S S S
Sbjct: 181 ASEGVPSRNIAKLIALDPRTIMQKVDRMIHAVKTAKELGIEPKSGMFIYAVVVRLSMSDS 240

[Close]
BLAST of CsaV3_5G029870 vs. NCBI nr
Match: XP_011656176.1 (PREDICTED: uncharacterized protein LOC105435654 [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 3.5e-53
Identity = 187/241 (77.59%), Postives = 196/241 (81.33%), Query Frame = 0 

Query: 1   MFKFSSTFLLHFIHKRSLNTISTSTLPSPSVSTIQFLTNSCGLSSGSLTSNGRKLRFDEK 60
           M K SSTFLLHFI KR LNTISTSTLP PSVSTIQFLTNSC LSSGS TS GRKL+FDEK
Sbjct: 405 MSKISSTFLLHFIFKRLLNTISTSTLPLPSVSTIQFLTNSCALSSGSTTSAGRKLQFDEK 464

Query: 61  HIQQYEAIIGFFKSHGFENSQIANLVSRRPSILQSRVSTNLKPKFEXXXXXXXXXXXXXX 120
           +IQQYEAIIGF KSHGFEN QIANLVSRRPSILQSRVSTNL PK  XXXXXXXXXXXXXX
Sbjct: 465 NIQQYEAIIGFLKSHGFENPQIANLVSRRPSILQSRVSTNLNPKXXXXXXXXXXXXXXXX 524

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              D L
Sbjct: 525 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTYDFKGVIKSNVDFL 584

Query: 181 ASEGVPSRNITKMITLNPRTFMQKADRVIGAVKTVKELGIEPKARMFIYALFSTSGSNRG 240
            SEG+PSRNI  MI + P T +QKADR+I  VKTVKELGIEPK  MF+YA+ S S  +  
Sbjct: 585 VSEGMPSRNIANMIAMQPITILQKADRMIRVVKTVKELGIEPKGPMFVYAVLSRSSMSDS 644

Query: 241 T 242
           T
Sbjct: 645 T 645

[Close]
BLAST of CsaV3_5G029870 vs. NCBI nr
Match: XP_008445929.1 (PREDICTED: transcription termination factor MTERF8, chloroplastic-like [Cucumis melo])

HSP 1 Score: 218.0 bits (554), Expect = 4.6e-53
Identity = 198/231 (85.71%), Postives = 210/231 (90.91%), Query Frame = 0 

Query: 1   MFKFSSTFLLHFIHKRSLNTISTSTLPSPSVSTIQFLTNSCGLSSGSLTSNGRKLRFDEK 60
           M + SS+FLLHFI  R LNTISTSTLP PSVSTIQFLTNSCGLSSGS TS GRKL+FDEK
Sbjct: 1   MSRLSSSFLLHFIQNRFLNTISTSTLPLPSVSTIQFLTNSCGLSSGSPTSAGRKLQFDEK 60

Query: 61  HIQQYEAIIGFFKSHGFENSQIANLVSRRPSILQSRVSTNLKPKFEXXXXXXXXXXXXXX 120
           + QQY A+I F KSHGFENSQIANLVSRRPSILQS+VSTNLKP+  XXXXXXXXXXXXXX
Sbjct: 61  NTQQYGAVIDFLKSHGFENSQIANLVSRRPSILQSKVSTNLKPRXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DVL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVL 180

Query: 181 ASEGVPSRNITKMITLNPRTFMQKADRVIGAVKTVKELGIEPKARMFIYAL 232
           ASEGVPSRNI KMI +NPR+ MQK DR+  AVKTVKELGIEPKARMF+YA+
Sbjct: 181 ASEGVPSRNIAKMIEMNPRSIMQKVDRMTLAVKTVKELGIEPKARMFVYAV 231

[Close]
BLAST of CsaV3_5G029870 vs. TAIR10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 55.8 bits (133), Expect = 5.5e-08
Identity = 96/204 (47.06%), Postives = 121/204 (59.31%), Query Frame = 0 

Query: 33  TIQFLTNSCGLSSGSLTSNGRKLRFDEKHIQQYEAIIGFFKSHGFENSQIANLVSRRPSI 92
           T+ +L +SCGLS  S T   RKL  D    ++   ++   + HGF  +QI++LV +RP +
Sbjct: 71  TLNYLIDSCGLSPDSATVASRKLLLDSP--ERPNTVLNLLRDHGFTTAQISSLVKKRPVL 130

Query: 93  LQSRVSTNLKPKFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 152
           L +   + L PK                    XXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 131 LLANAESVLLPKLSFFLSIGVSKSLLARTLASXXXXXXXXXXXXXXXXXXXXXXXXXXXX 190

Query: 153 XXXXXXXXXXXXXXXXXXXXXXXXADVLASEGVPSRNITKMITLNPRTFMQKADRVIGAV 212
           XXXXXXXXXXXXXXXXXXXXXXXX   +A  GVP + I  ++T  P   MQK        
Sbjct: 191 XXXXXXXXXXXXXXXXXXXXXXXXXXXMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIA 250

Query: 213 KTVKELGIEPKARMFIYALFSTSG 237
           K  +E+G  P+   F+ A+ + SG
Sbjct: 251 KQAQEMGFNPQKSTFVLAIHALSG 272

[Close]
BLAST of CsaV3_5G029870 vs. TAIR10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 46.6 bits (109), Expect = 3.3e-05
Identity = 23/72 (31.94%), Postives = 39/72 (54.17%), Query Frame = 0 

Query: 33  TIQFLTNSCGLSSGSLTSNGRKLRFDEKHIQQYEAIIGFFKSHGFENSQIANLVSRRPSI 92
           T+ +L +SCGLS  S  SN R ++      ++ ++++  FK HGF N QI +++   P +
Sbjct: 58  TVSYLVDSCGLSLESAKSNSRFVKLVSS--KKPDSVLALFKDHGFTNDQITSVIKSFPRV 117

Query: 93  LQSRVSTNLKPK 105
           L       + PK
Sbjct: 118 LSLSPEDVISPK 127

[Close]
BLAST of CsaV3_5G029870 vs. TAIR10
Match: AT1G62120.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 42.7 bits (99), Expect = 4.8e-04
Identity = 28/97 (28.87%), Postives = 49/97 (50.52%), Query Frame = 0 

Query: 19  NTISTSTLPSPSVS---------TIQFLTNSCGLSSGSLTSNGRKLRFDEKHIQQYEAII 78
           NT S+S + +   S         T+ +L +S GL++    S   K+ FD K     ++++
Sbjct: 35  NTFSSSAIAADVSSRDGRKGHNFTVSYLVDSLGLATKVAESISMKVSFDNK--GNPDSVL 94

Query: 79  GFFKSHGFENSQIANLVSRRPSILQSRVSTNLKPKFE 107
              +SHGF +SQI+N++   P +L      +L PK +
Sbjct: 95  SLLRSHGFTDSQISNIIRTFPRLLILDAEKSLAPKLQ 129

[Close]
BLAST of CsaV3_5G029870 vs. TrEMBL
Match: tr|A0A1S3BEP9|A0A1S3BEP9_CUCME (uncharacterized protein LOC103488811 OS=Cucumis melo OX=3656 GN=LOC103488811 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 3.0e-53
Identity = 195/231 (84.42%), Postives = 209/231 (90.48%), Query Frame = 0 

Query: 1   MFKFSSTFLLHFIHKRSLNTISTSTLPSPSVSTIQFLTNSCGLSSGSLTSNGRKLRFDEK 60
           M K SS+FLLHF H R LNT+STSTLP PSVSTIQFLTNSCGLSSGS TS GRKL+FDEK
Sbjct: 1   MSKISSSFLLHFFHNRFLNTVSTSTLPLPSVSTIQFLTNSCGLSSGSPTSAGRKLQFDEK 60

Query: 61  HIQQYEAIIGFFKSHGFENSQIANLVSRRPSILQSRVSTNLKPKFEXXXXXXXXXXXXXX 120
           HIQQY A+I F KSHGFEN+QIANLVS+RPSILQS+VSTNLKP+F XXXXXXXXXXXXXX
Sbjct: 61  HIQQYGAVIDFLKSHGFENTQIANLVSKRPSILQSKVSTNLKPRFXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DVL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDVL 180

Query: 181 ASEGVPSRNITKMITLNPRTFMQKADRVIGAVKTVKELGIEPKARMFIYAL 232
           ASEGVPSRNI KMI ++PRT MQK DR+I  VK VKELGIEPK R F++A+
Sbjct: 181 ASEGVPSRNIAKMIEMDPRTVMQKVDRMIQVVKKVKELGIEPKTRKFVHAI 231

[Close]
BLAST of CsaV3_5G029870 vs. TrEMBL
Match: tr|A0A1S3BDU9|A0A1S3BDU9_CUCME (transcription termination factor MTERF8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488808 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 3.0e-53
Identity = 198/231 (85.71%), Postives = 210/231 (90.91%), Query Frame = 0 

Query: 1   MFKFSSTFLLHFIHKRSLNTISTSTLPSPSVSTIQFLTNSCGLSSGSLTSNGRKLRFDEK 60
           M + SS+FLLHFI  R LNTISTSTLP PSVSTIQFLTNSCGLSSGS TS GRKL+FDEK
Sbjct: 1   MSRLSSSFLLHFIQNRFLNTISTSTLPLPSVSTIQFLTNSCGLSSGSPTSAGRKLQFDEK 60

Query: 61  HIQQYEAIIGFFKSHGFENSQIANLVSRRPSILQSRVSTNLKPKFEXXXXXXXXXXXXXX 120
           + QQY A+I F KSHGFENSQIANLVSRRPSILQS+VSTNLKP+  XXXXXXXXXXXXXX
Sbjct: 61  NTQQYGAVIDFLKSHGFENSQIANLVSRRPSILQSKVSTNLKPRXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DVL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVL 180

Query: 181 ASEGVPSRNITKMITLNPRTFMQKADRVIGAVKTVKELGIEPKARMFIYAL 232
           ASEGVPSRNI KMI +NPR+ MQK DR+  AVKTVKELGIEPKARMF+YA+
Sbjct: 181 ASEGVPSRNIAKMIEMNPRSIMQKVDRMTLAVKTVKELGIEPKARMFVYAV 231

[Close]
BLAST of CsaV3_5G029870 vs. TrEMBL
Match: tr|A0A1S3BEQ3|A0A1S3BEQ3_CUCME (uncharacterized protein LOC103488865 OS=Cucumis melo OX=3656 GN=LOC103488865 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 8.9e-53
Identity = 179/231 (77.49%), Postives = 192/231 (83.12%), Query Frame = 0 

Query: 1   MFKFSSTFLLHFIHKRSLNTISTSTLPSPSVSTIQFLTNSCGLSSGSLTSNGRKLRFDEK 60
           MFKFSSTFLLHFI KR LNT+STSTLP  SVST++FLTNSCGLSSGS TSNGRKL+FDEK
Sbjct: 1   MFKFSSTFLLHFIQKRFLNTVSTSTLPLASVSTVEFLTNSCGLSSGSPTSNGRKLQFDEK 60

Query: 61  HIQQYEAIIGFFKSHGFENSQIANLVSRRPSILQSRVSTNLKPKFEXXXXXXXXXXXXXX 120
           +IQQYEA+IGF KSHG EN QIA LVSR+P ILQS+VSTNLKPK  XXXXXXXXXXXXXX
Sbjct: 61  NIQQYEAVIGFLKSHGLENPQIAKLVSRKPWILQSKVSTNLKPKXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  DVL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSPWLLISDFKGILKSNIDVL 180

Query: 181 ASEGVPSRNITKMITLNPRTFMQKADRVIGAVKTVKELGIEPKARMFIYAL 232
           ASEGVPSRNI K+I  N RT M+K DR+I  VKTVKELGIEPKA MF++AL
Sbjct: 181 ASEGVPSRNIAKLIVSNSRTIMRKVDRMIEVVKTVKELGIEPKAGMFVHAL 231

[Close]
BLAST of CsaV3_5G029870 vs. TrEMBL
Match: tr|A0A1S3BEV9|A0A1S3BEV9_CUCME (transcription termination factor MTERF5, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488866 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.6e-52
Identity = 153/231 (66.23%), Postives = 169/231 (73.16%), Query Frame = 0 

Query: 1   MFKFSSTFLLHFIHKRSLNTISTSTLPSPSVSTIQFLTNSCGLSSGSLTSNGRKLRFDEK 60
           MFKFSSTFLLHFI KR LNT+STSTLP  SVSTIQFLTNSCGLSSGS  S GRKL+FDE+
Sbjct: 1   MFKFSSTFLLHFIQKRFLNTVSTSTLPLASVSTIQFLTNSCGLSSGSPISRGRKLQFDEE 60

Query: 61  HIQQYEAIIGFFKSHGFENSQIANLVSRRPSILQSRVSTNLKPKFEXXXXXXXXXXXXXX 120
           ++QQY A+IGFFKSHGFE+SQIA LVSR+PSIL S VSTNLKPKFE           XXX
Sbjct: 61  NLQQYGAVIGFFKSHGFEDSQIAKLVSRKPSILHSTVSTNLKPKFEFLQEIGIVGPLXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXX                               DVL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXMLGSDKKVTAAICRTSWLLTSNSNGTVRSNIDVL 180

Query: 181 ASEGVPSRNITKMITLNPRTFMQKADRVIGAVKTVKELGIEPKARMFIYAL 232
            SEGVPS NI ++I LNPR+ M+K DR+I AVKTVKELG+EPK  MF+YA+
Sbjct: 181 VSEGVPSTNIAQIIALNPRSVMRKVDRMIRAVKTVKELGVEPKDGMFVYAV 231

[Close]
BLAST of CsaV3_5G029870 vs. TrEMBL
Match: tr|A0A1S3BDE1|A0A1S3BDE1_CUCME (transcription termination factor MTERF2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488812 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.1e-50
Identity = 194/231 (83.98%), Postives = 206/231 (89.18%), Query Frame = 0 

Query: 1   MFKFSSTFLLHFIHKRSLNTISTSTLPSPSVSTIQFLTNSCGLSSGSLTSNGRKLRFDEK 60
           M K SS+FLLHFI  R LNT+ST+TLP PSVSTIQFLTNSCGLSSGS TS GRKL+FDEK
Sbjct: 1   MSKLSSSFLLHFIQNRFLNTVSTTTLPLPSVSTIQFLTNSCGLSSGSPTSAGRKLQFDEK 60

Query: 61  HIQQYEAIIGFFKSHGFENSQIANLVSRRPSILQSRVSTNLKPKFEXXXXXXXXXXXXXX 120
           HIQQY AII F KS GFEN+QIA LVSR PSILQS+VS NLKPK  XXXXXXXXXXXXXX
Sbjct: 61  HIQQYGAIIDFLKSQGFENTQIAKLVSRGPSILQSKVSNNLKPKXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DVL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVL 180

Query: 181 ASEGVPSRNITKMITLNPRTFMQKADRVIGAVKTVKELGIEPKARMFIYAL 232
            SEGVPSRNI++MI+L PR  MQK DR+I AVKTVKELGIEPKAR F+YA+
Sbjct: 181 VSEGVPSRNISRMISLQPRAIMQKVDRLIPAVKTVKELGIEPKARTFVYAV 231

The following BLAST results are available for this feature:
BLAST of CsaV3_5G029870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011655553.11.4e-5774.46PREDICTED: uncharacterized protein LOC101217091 [Cucumis sativus][more]
XP_011655534.12.6e-5673.97PREDICTED: uncharacterized protein LOC101219264 [Cucumis sativus][more]
XP_004135534.25.8e-5673.44PREDICTED: uncharacterized protein LOC101204518 [Cucumis sativus] >XP_011655533.... [more]
XP_011656176.13.5e-5377.59PREDICTED: uncharacterized protein LOC105435654 [Cucumis sativus][more]
XP_008445929.14.6e-5385.71PREDICTED: transcription termination factor MTERF8, chloroplastic-like [Cucumis ... [more]
BLAST of CsaV3_5G029870 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G07900.15.5e-0847.06Mitochondrial transcription termination factor family protein[more]
AT1G21150.13.3e-0531.94Mitochondrial transcription termination factor family protein[more]
AT1G62120.14.8e-0428.87Mitochondrial transcription termination factor family protein[more]
BLAST of CsaV3_5G029870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G029870 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BEP9|A0A1S3BEP9_CUCME3.0e-5384.42uncharacterized protein LOC103488811 OS=Cucumis melo OX=3656 GN=LOC103488811 PE=... [more]
tr|A0A1S3BDU9|A0A1S3BDU9_CUCME3.0e-5385.71transcription termination factor MTERF8, chloroplastic-like OS=Cucumis melo OX=3... [more]
tr|A0A1S3BEQ3|A0A1S3BEQ3_CUCME8.9e-5377.49uncharacterized protein LOC103488865 OS=Cucumis melo OX=3656 GN=LOC103488865 PE=... [more]
tr|A0A1S3BEV9|A0A1S3BEV9_CUCME2.6e-5266.23transcription termination factor MTERF5, chloroplastic-like isoform X1 OS=Cucumi... [more]
tr|A0A1S3BDE1|A0A1S3BDE1_CUCME1.1e-5083.98transcription termination factor MTERF2, chloroplastic-like OS=Cucumis melo OX=3... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR038538MTERF_sf
IPR003690MTERF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003690 double-stranded DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G029870.1CsaV3_5G029870.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 119..150
e-value: 0.49
score: 19.5
coord: 191..221
e-value: 110.0
score: 11.5
coord: 45..78
e-value: 2700.0
score: 0.5
coord: 155..186
e-value: 49.0
score: 12.8
coord: 83..114
e-value: 7.3E-5
score: 32.2
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 70..221
e-value: 1.4E-19
score: 70.2
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3DG3DSA:1.25.70.10coord: 53..235
e-value: 1.0E-24
score: 89.2
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 7..233
NoneNo IPR availablePANTHERPTHR13068:SF20SUBFAMILY NOT NAMEDcoord: 7..233

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G029870CsGy5G020620Cucumber (Gy14) v2cgybcucB232
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G029870Cucumber (Gy14) v1cgycucB076
CsaV3_5G029870Cucurbita maxima (Rimu)cmacucB0495
CsaV3_5G029870Cucurbita maxima (Rimu)cmacucB0499
CsaV3_5G029870Wax gourdcucwgoB471
CsaV3_5G029870Cucurbita maxima (Rimu)cmacucB0886
CsaV3_5G029870Cucurbita moschata (Rifu)cmocucB0488
CsaV3_5G029870Cucurbita moschata (Rifu)cmocucB0489
CsaV3_5G029870Cucurbita moschata (Rifu)cmocucB0875
CsaV3_5G029870Cucurbita pepo (Zucchini)cpecucB0044
CsaV3_5G029870Cucurbita pepo (Zucchini)cpecucB0051
CsaV3_5G029870Cucurbita pepo (Zucchini)cpecucB0544
CsaV3_5G029870Wild cucumber (PI 183967)cpicucB284
CsaV3_5G029870Wild cucumber (PI 183967)cpicucB297
CsaV3_5G029870Wild cucumber (PI 183967)cpicucB301
CsaV3_5G029870Bottle gourd (USVL1VR-Ls)cuclsiB393
CsaV3_5G029870Melon (DHL92) v3.5.1cucmeB380
CsaV3_5G029870Melon (DHL92) v3.5.1cucmeB381
CsaV3_5G029870Melon (DHL92) v3.6.1cucmedB372
CsaV3_5G029870Melon (DHL92) v3.6.1cucmedB373
CsaV3_5G029870Melon (DHL92) v3.6.1cucmedB374
CsaV3_5G029870Melon (DHL92) v3.6.1cucmedB375
CsaV3_5G029870Melon (DHL92) v3.6.1cucmedB385
CsaV3_5G029870Watermelon (Charleston Gray)cucwcgB375
CsaV3_5G029870Watermelon (97103) v1cucwmB458
CsaV3_5G029870Watermelon (97103) v2cucwmbB373
CsaV3_5G029870Silver-seed gourdcarcucB0156
CsaV3_5G029870Silver-seed gourdcarcucB0730
CsaV3_5G029870Silver-seed gourdcarcucB0760