CsaV3_5G029460 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G029460
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 24423228 .. 24423437 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTCGAGAGGTGGGCCAGAACATTTAGAAGCAAGCAAGCAAGAGAGAAAGGTAAGAATTGATAAGAGTTTAGTAGGAAGAAGACCTTTTACCAAAATTTTAGCTGAGAAAACGGCATTGATTTACGAGCAGAGAGTTGAAGATGGACTGGTCGCAGTAGCGGGAAATGGGAGGGAACAAGCAAAGGAGCTGATGTGGCCCAGTTGA

mRNA sequence

ATGGACTCGAGAGGTGGGCCAGAACATTTAGAAGCAAGCAAGCAAGAGAGAAAGGTAAGAATTGATAAGAGTTTAGTAGGAAGAAGACCTTTTACCAAAATTTTAGCTGAGAAAACGGCATTGATTTACGAGCAGAGAGTTGAAGATGGACTGGTCGCAGTAGCGGGAAATGGGAGGGAACAAGCAAAGGAGCTGATGTGGCCCAGTTGA

Coding sequence (CDS)

ATGGACTCGAGAGGTGGGCCAGAACATTTAGAAGCAAGCAAGCAAGAGAGAAAGGTAAGAATTGATAAGAGTTTAGTAGGAAGAAGACCTTTTACCAAAATTTTAGCTGAGAAAACGGCATTGATTTACGAGCAGAGAGTTGAAGATGGACTGGTCGCAGTAGCGGGAAATGGGAGGGAACAAGCAAAGGAGCTGATGTGGCCCAGTTGA

Protein sequence

MDSRGGPEHLEASKQERKVRIDKSLVGRRPFTKILAEKTALIYEQRVEDGLVAVAGNGREQAKELMWPS

Homology

[Close]

BLAST of CsaV3_5G029460 vs. NCBI nr
Match: KGN51598.1 (hypothetical protein Csa_5G583285 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 4.6e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MDSRGGPEHLEASKQERKVRIDKSLVGRRPFTKILAEKTALIYEQRVEDGLVAVAGNGRE 60
          MDSRGGPEHLEASKQERKVRIDKSLVGRRPFTKILAEKTALIYEQRVEDGLVAVAGNGRE
Sbjct: 1  MDSRGGPEHLEASKQERKVRIDKSLVGRRPFTKILAEKTALIYEQRVEDGLVAVAGNGRE 60

Query: 61 QAKELMWPS 70
          QAKELMWPS
Sbjct: 61 QAKELMWPS 69

[Close]

BLAST of CsaV3_5G029460 vs. TrEMBL
Match: tr|A0A0A0KPT5|A0A0A0KPT5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G583285 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.0e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MDSRGGPEHLEASKQERKVRIDKSLVGRRPFTKILAEKTALIYEQRVEDGLVAVAGNGRE 60
          MDSRGGPEHLEASKQERKVRIDKSLVGRRPFTKILAEKTALIYEQRVEDGLVAVAGNGRE
Sbjct: 1  MDSRGGPEHLEASKQERKVRIDKSLVGRRPFTKILAEKTALIYEQRVEDGLVAVAGNGRE 60

Query: 61 QAKELMWPS 70
          QAKELMWPS
Sbjct: 61 QAKELMWPS 69

The following BLAST results are available for this feature:

BLAST of CsaV3_5G029460 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51598.1	4.6e-30	100.00	hypothetical protein Csa_5G583285 [Cucumis sativus]	[more]

BLAST of CsaV3_5G029460 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G029460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G029460 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPT5\|A0A0A0KPT5_CUCSA	3.0e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G583285 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G029460.1	CsaV3_5G029460.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G029460	Silver-seed gourd	carcucB0760
CsaV3_5G029460	Silver-seed gourd	carcucB0885
CsaV3_5G029460	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G029460	Cucumber (Gy14) v1	cgycucB076
CsaV3_5G029460	Cucumber (Gy14) v1	cgycucB077
CsaV3_5G029460	Cucurbita maxima (Rimu)	cmacucB0499
CsaV3_5G029460	Cucurbita maxima (Rimu)	cmacucB0863
CsaV3_5G029460	Cucurbita moschata (Rifu)	cmocucB0489
CsaV3_5G029460	Cucurbita moschata (Rifu)	cmocucB0849
CsaV3_5G029460	Cucurbita pepo (Zucchini)	cpecucB0044
CsaV3_5G029460	Cucurbita pepo (Zucchini)	cpecucB0520
CsaV3_5G029460	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G029460	Wild cucumber (PI 183967)	cpicucB297
CsaV3_5G029460	Bottle gourd (USVL1VR-Ls)	cuclsiB393
CsaV3_5G029460	Melon (DHL92) v3.5.1	cucmeB381
CsaV3_5G029460	Melon (DHL92) v3.6.1	cucmedB373
CsaV3_5G029460	Melon (DHL92) v3.6.1	cucmedB375
CsaV3_5G029460	Melon (DHL92) v3.6.1	cucmedB385
CsaV3_5G029460	Watermelon (Charleston Gray)	cucwcgB375
CsaV3_5G029460	Watermelon (97103) v1	cucwmB458
CsaV3_5G029460	Watermelon (97103) v2	cucwmbB373
CsaV3_5G029460	Wax gourd	cucwgoB514