CsaV3_5G028720 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G028720
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 23853155 .. 23853706 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTCTTTACTTCCTTCCTTGTTTCTTCTTCTAACAATGCAAACTCCAAATTTCTTCAATGGCGCTGTGACCAACCGGAGCAACAACAACGAGAGAGCACCGGTGACCGACGGTGATGGGGCAAAGTCAGAGATGGGTCGTTATTACATTGTAGAAAAAGAGAGGAATTATATTACGATATTGTTGAGAAAATATGCATAGAAAATGAAAAACCAGAGCTTTGCAAAATCAAGAATCTCTCTCATTCAGCTTTTGTCATAACCCAGATTTAAAGGGATTTGGGAGAGCGTCTTATGAATTATGCATTGCAAAGGGGAATTGAGGGTAATGGTCCGAATTTTTTTTTGTTCTTTTTAATTTGAAAAAAAAAAATCTTAATTGTTTTTCTTTTTCTTTTTTATTTTTTTCTCTTTAAGTGTTGAAGACATGGGTTGTAAGAGATGCATACGAGCAAAGCCTTTGTTAGGGTTTTCGTTTCTTTCTTTCTTTTCTTTCTTTTTTTTCTGCTGCTGCTGCTGAGCATGCATCACTTACACCAAGCATGTATTTTT

mRNA sequence

ATGCAAACTCCAAATTTCTTCAATGGCGCTGTGACCAACCGGAGCAACAACAACGAGAGAGCACCGGTGACCGACGGTGATGGGGCAAAGTCAGAGATGGGTCGTTATTACATTGTAGAAAAAGAGAGGAATTATATTACGATATTGTTGAGAAAATATGCATAG

Coding sequence (CDS)

ATGCAAACTCCAAATTTCTTCAATGGCGCTGTGACCAACCGGAGCAACAACAACGAGAGAGCACCGGTGACCGACGGTGATGGGGCAAAGTCAGAGATGGGTCGTTATTACATTGTAGAAAAAGAGAGGAATTATATTACGATATTGTTGAGAAAATATGCATAG

Protein sequence

MQTPNFFNGAVTNRSNNNERAPVTDGDGAKSEMGRYYIVEKERNYITILLRKYA
Homology
[Close]
BLAST of CsaV3_5G028720 vs. NCBI nr
Match: KGN51527.1 (hypothetical protein Csa_5G576690 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MQTPNFFNGAVTNRSNNNERAPVTDGDGAKSEMGRYYIVEKERNYITILLRKYA 55
          MQTPNFFNGAVTNRSNNNERAPVTDGDGAKSEMGRYYIVEKERNYITILLRKYA
Sbjct: 1  MQTPNFFNGAVTNRSNNNERAPVTDGDGAKSEMGRYYIVEKERNYITILLRKYA 54

[Close]
BLAST of CsaV3_5G028720 vs. TrEMBL
Match: tr|A0A0A0KT07|A0A0A0KT07_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576690 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.4e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MQTPNFFNGAVTNRSNNNERAPVTDGDGAKSEMGRYYIVEKERNYITILLRKYA 55
          MQTPNFFNGAVTNRSNNNERAPVTDGDGAKSEMGRYYIVEKERNYITILLRKYA
Sbjct: 1  MQTPNFFNGAVTNRSNNNERAPVTDGDGAKSEMGRYYIVEKERNYITILLRKYA 54

The following BLAST results are available for this feature:
BLAST of CsaV3_5G028720 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51527.13.6e-22100.00hypothetical protein Csa_5G576690 [Cucumis sativus][more]
BLAST of CsaV3_5G028720 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G028720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G028720 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KT07|A0A0A0KT07_CUCSA2.4e-22100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576690 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G028720.1CsaV3_5G028720.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G028720CSPI05G19890Wild cucumber (PI 183967)cpicucB284
CsaV3_5G028720Cucsa.280650Cucumber (Gy14) v1cgycucB428
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G028720Watermelon (97103) v2cucwmbB359
CsaV3_5G028720Watermelon (97103) v2cucwmbB394
CsaV3_5G028720Wax gourdcucwgoB461
CsaV3_5G028720Wax gourdcucwgoB519
CsaV3_5G028720Cucumber (Chinese Long) v3cuccucB199
CsaV3_5G028720Silver-seed gourdcarcucB0833
CsaV3_5G028720Silver-seed gourdcarcucB0887
CsaV3_5G028720Silver-seed gourdcarcucB1098
CsaV3_5G028720Cucumber (Gy14) v2cgybcucB232
CsaV3_5G028720Cucumber (Gy14) v2cgybcucB239
CsaV3_5G028720Cucumber (Gy14) v1cgycucB440
CsaV3_5G028720Cucurbita maxima (Rimu)cmacucB0355
CsaV3_5G028720Cucurbita maxima (Rimu)cmacucB0497
CsaV3_5G028720Cucurbita maxima (Rimu)cmacucB0875
CsaV3_5G028720Cucurbita maxima (Rimu)cmacucB0888
CsaV3_5G028720Cucurbita moschata (Rifu)cmocucB0350
CsaV3_5G028720Cucurbita moschata (Rifu)cmocucB0486
CsaV3_5G028720Cucurbita moschata (Rifu)cmocucB0863
CsaV3_5G028720Cucurbita moschata (Rifu)cmocucB0878
CsaV3_5G028720Cucurbita pepo (Zucchini)cpecucB0053
CsaV3_5G028720Cucurbita pepo (Zucchini)cpecucB0212
CsaV3_5G028720Cucurbita pepo (Zucchini)cpecucB0539
CsaV3_5G028720Cucurbita pepo (Zucchini)cpecucB0547
CsaV3_5G028720Wild cucumber (PI 183967)cpicucB302
CsaV3_5G028720Bottle gourd (USVL1VR-Ls)cuclsiB352
CsaV3_5G028720Bottle gourd (USVL1VR-Ls)cuclsiB391
CsaV3_5G028720Melon (DHL92) v3.5.1cucmeB350
CsaV3_5G028720Melon (DHL92) v3.5.1cucmeB376
CsaV3_5G028720Melon (DHL92) v3.6.1cucmedB342
CsaV3_5G028720Melon (DHL92) v3.6.1cucmedB366
CsaV3_5G028720Watermelon (Charleston Gray)cucwcgB394
CsaV3_5G028720Watermelon (Charleston Gray)cucwcgB412
CsaV3_5G028720Watermelon (97103) v1cucwmB424
CsaV3_5G028720Watermelon (97103) v1cucwmB441