CsaV3_5G028550 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTGGAATTAGGCATAGGGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGTCAAGTCGCTGTTGTTTTTATTTGTTTCCTCAGTGTTTAGTTTAACGTTGAATCACATCATCTCCCAATTCAAAAAAACCCCTTTTTATCTCTCTTTCTCTCTCTCACTCTGTTCTCCCCTGTTTCCAAAAATCCTCCCTTTTCCCTCTCTTCCCTTGCTGCTGACTTCTTTCCTCTTTCAAAATCAAAACCAAGACCAAAATCTCTCTCCAAACAGTCCTTTCTCTCACATGTGCCCTCTCCTTTTGAGGACCAAACTCCTCTTATTAATAAATTAAACCCCACTTCTCCCCATCCCATTCTCCTTTGCTCTCTCTATCCTCTTAGCACATTCGTCTCAAGAAATGACTAAAGAGGATGATTTTAAGCTACTAAAGTTTCAGGTTTTCCTCCCTTTTTCCGTTTCTCTCTTCATAAACCCACTTTCCACCATGTTTTGTTTTGTTTTGTTTTCTTCTTCTAAAGTTGTCTCTTTTTGCTTCTTCTTTGCTCTCATGAAGGAATCTTCTTTTACATGTGTGTGAATGTTTTTTTGAGATTTTTTTTTTGGTTTGTTTTCTTTAGACTTGTGATCTCAGAGTGAACATTCACTGTGATGGGTGTAGGCTGAAAGTTAAGAAACTTCTTCAAAGGATAGAAGGTTTGTTCTTTTGCCTTTCTATTTTGTTACCTTTTTTTTTTTTGGCTCATCTCCTTTTCATTCTTGTTGTCTTTACTCCTTTTTGGGTCAATGGTAATGTAATGCTGCTGTGGAACTTGTCTGGGGACTAGGATTTTGAGAAAAAATGGGAAAAAAAGTTTCTAAGGAGACATGGTTTTTGTGGTATTTGTTTAATTCTTGAAGAAAATGTGAACTTCGTAGGTTAGGGAATAGATTACTGCTTTGAGAAATTGAAAATTGTCTATTGTGATGGAAGTTAAGTTGTGTGCTTTGGCTTGTTTGGTTACTGGGAAAGTGTAAGTAAATTAGGAAAAAGAAGGAAATTTTGTCATTTTGTTTTGACAGCAGCCTTTTGATGAAATTTCTGTTGTTTGAACAGGAGTTTTTCAGGTTGAAATAGGTGCAGAGAATCAAAAGGTTACTGTTTTAGGCAATGTGGATTCTTCAACTTTGATCAATAAGCTGGTGAGAGCTGGAAAACATGCTGAGCTTTGGTCACAGAAAGGAAACCCAAGCCCGAAACCAAAGAACAAAGAGGATAAAACTCCGAACAAGGAAACGAAGCATCTTAAATTGACTACATTCAACTGTGAAGATGATGAAATTGCTGATTGTGTTGAGGAAGGAGATGATTATGAAGTTGCACAGCTTCAGTTCAGAGATCTCCTCAGGCAGCGAGCAATCGAAGCGAACAATGCCGGGAAAGGTGGCATTGGGATCAGCCGAATTCCCGGGCTTGTTGCGGGAAATGGCAAGATGAACAACAACCACCACCACCTCAGCATTAACAACAAACCTGGGAATGGGAAGAAAATAGACCCTAATCAGCCAATGTCAATAAAAAACACCCCATCTGAGATTGACAGAAAAACTTTGGCAACTCTGAAGATGAACAATGCTCAACTTTTCGGTAACGGCCGGGAAAGTATCAATCCTGGGGAAGCGAAAAGAGCCAACAACAACGACCTGAATTCTATGATGAGCATGGCGGGATTCAATGGCGGCAACCTGTTAAATTTTGCCACTCCATCGTCAATCGATGTCAATTCAACAAACACCTCTCAAGGACTTCACCTTCAACAAAACAATGGCTATGGTTATGGCTATCAACCACCATCTACCTCTGGATTCTCCATGGCAACTGGTCAATATCATCACCAACAACAGCAACAACCAAACTTCATAAGTGGCTACAACCAGTATCAACAACAGCAACCATCGATGAACATGAACAACATGCTAAATAGGCAAGCAATGAATCAACAGCCTCAAATGATGTACAATAGAGCTCAATTGGTTCCATCAAACACAGGATATTACTTCAGTTACAATCCAAGCCCTGTTCATCCAAGTCATCCCAATGTTCATGGGTACAACAGTAACTCTGCAGCCGATATGTTCAGTGATGAGAACACAAGCAGCAGTTGCTCAATTATGTAAGAAAGAAAAGGGACAAAGATCATTGTCATTTTTATTTTTTTTTGTTTGTGTATGTTTGGGGTGGGGGGTTGTTTTTTTGTGTTTAGGGGATCTCTTTCTCTTTTCTCTTTTGTCAGTGTATTTTGTTTATTGTTCTTCGAAGATGATGTTTGTGAAATTTGAAGCTGTCTTGTCTGTTTGTTTGTTTGTCTTTGTTGTTTTTCTTTGTTTCAGAAAACAGACTTTGATGGTCTTGGTGTAAGGGTGACTTATGGAGAAAACATATAATACTGTGGAGGATGATGAGATGAGACTAGAGAGAGTTGTTGGATTTTGAACAGATTTGATTCTGTGCATTACTTTGAACAGAAGAACAGGATTTGGATTAGGGTTTTGTAGATTCTGGATAAATTTGGGATCTTGGAAACCCCCCCAAAAGAAGAAAAGAAAAGAAAATACAATAAAAGTTCTAGTGGTTTGGTCAGGTATTTATCC ATGACTAAAGAGGATGATTTTAAGCTACTAAAGTTTCAGACTTGTGATCTCAGAGTGAACATTCACTGTGATGGGTGTAGGCTGAAAGTTAAGAAACTTCTTCAAAGGATAGAAGGAGTTTTTCAGGTTGAAATAGGTGCAGAGAATCAAAAGGTTACTGTTTTAGGCAATGTGGATTCTTCAACTTTGATCAATAAGCTGGTGAGAGCTGGAAAACATGCTGAGCTTTGGTCACAGAAAGGAAACCCAAGCCCGAAACCAAAGAACAAAGAGGATAAAACTCCGAACAAGGAAACGAAGCATCTTAAATTGACTACATTCAACTGTGAAGATGATGAAATTGCTGATTGTGTTGAGGAAGGAGATGATTATGAAGTTGCACAGCTTCAGTTCAGAGATCTCCTCAGGCAGCGAGCAATCGAAGCGAACAATGCCGGGAAAGGTGGCATTGGGATCAGCCGAATTCCCGGGCTTGTTGCGGGAAATGGCAAGATGAACAACAACCACCACCACCTCAGCATTAACAACAAACCTGGGAATGGGAAGAAAATAGACCCTAATCAGCCAATGTCAATAAAAAACACCCCATCTGAGATTGACAGAAAAACTTTGGCAACTCTGAAGATGAACAATGCTCAACTTTTCGGTAACGGCCGGGAAAGTATCAATCCTGGGGAAGCGAAAAGAGCCAACAACAACGACCTGAATTCTATGATGAGCATGGCGGGATTCAATGGCGGCAACCTGTTAAATTTTGCCACTCCATCGTCAATCGATGTCAATTCAACAAACACCTCTCAAGGACTTCACCTTCAACAAAACAATGGCTATGGTTATGGCTATCAACCACCATCTACCTCTGGATTCTCCATGGCAACTGGTCAATATCATCACCAACAACAGCAACAACCAAACTTCATAAGTGGCTACAACCAGTATCAACAACAGCAACCATCGATGAACATGAACAACATGCTAAATAGGCAAGCAATGAATCAACAGCCTCAAATGATGTACAATAGAGCTCAATTGGTTCCATCAAACACAGGATATTACTTCAGTTACAATCCAAGCCCTGTTCATCCAAGTCATCCCAATGTTCATGGGTACAACAGTAACTCTGCAGCCGATATGTTCAGTGATGAGAACACAAGCAGCAGTTGCTCAATTATGTAA ATGACTAAAGAGGATGATTTTAAGCTACTAAAGTTTCAGACTTGTGATCTCAGAGTGAACATTCACTGTGATGGGTGTAGGCTGAAAGTTAAGAAACTTCTTCAAAGGATAGAAGGAGTTTTTCAGGTTGAAATAGGTGCAGAGAATCAAAAGGTTACTGTTTTAGGCAATGTGGATTCTTCAACTTTGATCAATAAGCTGGTGAGAGCTGGAAAACATGCTGAGCTTTGGTCACAGAAAGGAAACCCAAGCCCGAAACCAAAGAACAAAGAGGATAAAACTCCGAACAAGGAAACGAAGCATCTTAAATTGACTACATTCAACTGTGAAGATGATGAAATTGCTGATTGTGTTGAGGAAGGAGATGATTATGAAGTTGCACAGCTTCAGTTCAGAGATCTCCTCAGGCAGCGAGCAATCGAAGCGAACAATGCCGGGAAAGGTGGCATTGGGATCAGCCGAATTCCCGGGCTTGTTGCGGGAAATGGCAAGATGAACAACAACCACCACCACCTCAGCATTAACAACAAACCTGGGAATGGGAAGAAAATAGACCCTAATCAGCCAATGTCAATAAAAAACACCCCATCTGAGATTGACAGAAAAACTTTGGCAACTCTGAAGATGAACAATGCTCAACTTTTCGGTAACGGCCGGGAAAGTATCAATCCTGGGGAAGCGAAAAGAGCCAACAACAACGACCTGAATTCTATGATGAGCATGGCGGGATTCAATGGCGGCAACCTGTTAAATTTTGCCACTCCATCGTCAATCGATGTCAATTCAACAAACACCTCTCAAGGACTTCACCTTCAACAAAACAATGGCTATGGTTATGGCTATCAACCACCATCTACCTCTGGATTCTCCATGGCAACTGGTCAATATCATCACCAACAACAGCAACAACCAAACTTCATAAGTGGCTACAACCAGTATCAACAACAGCAACCATCGATGAACATGAACAACATGCTAAATAGGCAAGCAATGAATCAACAGCCTCAAATGATGTACAATAGAGCTCAATTGGTTCCATCAAACACAGGATATTACTTCAGTTACAATCCAAGCCCTGTTCATCCAAGTCATCCCAATGTTCATGGGTACAACAGTAACTCTGCAGCCGATATGTTCAGTGATGAGAACACAAGCAGCAGTTGCTCAATTATGTAA MTKEDDFKLLKFQTCDLRVNIHCDGCRLKVKKLLQRIEGVFQVEIGAENQKVTVLGNVDSSTLINKLVRAGKHAELWSQKGNPSPKPKNKEDKTPNKETKHLKLTTFNCEDDEIADCVEEGDDYEVAQLQFRDLLRQRAIEANNAGKGGIGISRIPGLVAGNGKMNNNHHHLSINNKPGNGKKIDPNQPMSIKNTPSEIDRKTLATLKMNNAQLFGNGRESINPGEAKRANNNDLNSMMSMAGFNGGNLLNFATPSSIDVNSTNTSQGLHLQQNNGYGYGYQPPSTSGFSMATGQYHHQQQQQPNFISGYNQYQQQQPSMNMNNMLNRQAMNQQPQMMYNRAQLVPSNTGYYFSYNPSPVHPSHPNVHGYNSNSAADMFSDENTSSSCSIM
BLAST of CsaV3_5G028550 vs. NCBI nr
Match: XP_004150476.1 (PREDICTED: component of gems protein 1 [Cucumis sativus] >KGN51509.1 hypothetical protein Csa_5G571520 [Cucumis sativus]) HSP 1 Score: 716.8 bits (1849), Expect = 3.9e-203 Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. NCBI nr
Match: XP_008467148.1 (PREDICTED: putative mediator of RNA polymerase II transcription subunit 29 [Cucumis melo]) HSP 1 Score: 671.0 bits (1730), Expect = 2.4e-189 Identity = 361/392 (92.09%), Postives = 368/392 (93.88%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. NCBI nr
Match: XP_023520932.1 (heavy metal-associated isoprenylated plant protein 37 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 370.5 bits (950), Expect = 6.8e-99 Identity = 241/400 (60.25%), Postives = 265/400 (66.25%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. NCBI nr
Match: XP_022989984.1 (heavy metal-associated isoprenylated plant protein 37 [Cucurbita maxima]) HSP 1 Score: 369.0 bits (946), Expect = 2.0e-98 Identity = 242/401 (60.35%), Postives = 266/401 (66.33%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. NCBI nr
Match: XP_022953864.1 (heavy metal-associated isoprenylated plant protein 37 [Cucurbita moschata]) HSP 1 Score: 364.4 bits (934), Expect = 4.9e-97 Identity = 242/400 (60.50%), Postives = 266/400 (66.50%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. TAIR10
Match: AT1G23000.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 126.3 bits (316), Expect = 4.1e-29 Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. TAIR10
Match: AT3G06130.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 101.7 bits (252), Expect = 1.1e-21 Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. TAIR10
Match: AT5G19090.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 100.9 bits (250), Expect = 1.8e-21 Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. TAIR10
Match: AT3G05220.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 89.4 bits (220), Expect = 5.5e-18 Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. TAIR10
Match: AT5G27690.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 87.8 bits (216), Expect = 1.6e-17 Identity = 38/74 (51.35%), Postives = 56/74 (75.68%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. Swiss-Prot
Match: sp|A2RVM8|HIP37_ARATH (Heavy metal-associated isoprenylated plant protein 37 OS=Arabidopsis thaliana OX=3702 GN=HIPP37 PE=2 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 7.3e-28 Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. Swiss-Prot
Match: sp|Q9M8K5|HIP32_ARATH (Heavy metal-associated isoprenylated plant protein 32 OS=Arabidopsis thaliana OX=3702 GN=HIPP32 PE=2 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 1.9e-20 Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. Swiss-Prot
Match: sp|F4JZL7|HIP33_ARATH (Heavy metal-associated isoprenylated plant protein 33 OS=Arabidopsis thaliana OX=3702 GN=HIPP33 PE=2 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 3.3e-20 Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. Swiss-Prot
Match: sp|Q0WV37|HIP34_ARATH (Heavy metal-associated isoprenylated plant protein 34 OS=Arabidopsis thaliana OX=3702 GN=HIPP34 PE=2 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 9.9e-17 Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. Swiss-Prot
Match: sp|Q84J88|HIP36_ARATH (Heavy metal-associated isoprenylated plant protein 36 OS=Arabidopsis thaliana OX=3702 GN=HIPP36 PE=2 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 2.9e-16 Identity = 38/74 (51.35%), Postives = 56/74 (75.68%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. TrEMBL
Match: tr|A0A0A0KRM8|A0A0A0KRM8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571520 PE=4 SV=1) HSP 1 Score: 716.8 bits (1849), Expect = 2.6e-203 Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. TrEMBL
Match: tr|A0A1S3CSU7|A0A1S3CSU7_CUCME (putative mediator of RNA polymerase II transcription subunit 29 OS=Cucumis melo OX=3656 GN=LOC103504571 PE=4 SV=1) HSP 1 Score: 671.0 bits (1730), Expect = 1.6e-189 Identity = 361/392 (92.09%), Postives = 368/392 (93.88%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. TrEMBL
Match: tr|A0A151U7S1|A0A151U7S1_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_008076 PE=4 SV=1) HSP 1 Score: 247.7 bits (631), Expect = 4.4e-62 Identity = 190/423 (44.92%), Postives = 248/423 (58.63%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. TrEMBL
Match: tr|F6HFJ4|F6HFJ4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g04710 PE=4 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 1.3e-53 Identity = 180/416 (43.27%), Postives = 231/416 (55.53%), Query Frame = 0
BLAST of CsaV3_5G028550 vs. TrEMBL
Match: tr|A0A068TZH8|A0A068TZH8_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00032818001 PE=4 SV=1) HSP 1 Score: 211.1 bits (536), Expect = 4.6e-51 Identity = 174/429 (40.56%), Postives = 215/429 (50.12%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |