CsaV3_5G027830 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G027830
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 23025413 .. 23025679 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCGAATTGAAGCCTTAGACGGAAGAGAAGAAAAAATCTCCCTAGTCTACTTCTCGAGGATGAGCGCATTAGGGACTATCTACAAGTTAAAGTTATGAAAGTATAGAAAAGGACTTTATTATGGAACAAAAGAGTAAGTTAAGCATGAAAAGTAATTAGGGTTGAGTGTGGGTGAATGGGTTAGATGTGTAAAAAGAGTAGTAGTGATGGAGCAGAATGAGGATGAGGATGAGGATGAGGATGAGGAGGAAGAAAGGGATTAG

mRNA sequence

ATGAAGCGAATTGAAGCCTTAGACGGAAGAGAAGAAAAAATCTCCCTAGTCTACTTCTCGAGGATGAGCGCATTAGGGACTATCTACAAGTTAAAATGTGTAAAAAGAGTAGTAGTGATGGAGCAGAATGAGGATGAGGATGAGGATGAGGATGAGGAGGAAGAAAGGGATTAG

Coding sequence (CDS)

ATGAAGCGAATTGAAGCCTTAGACGGAAGAGAAGAAAAAATCTCCCTAGTCTACTTCTCGAGGATGAGCGCATTAGGGACTATCTACAAGTTAAAATGTGTAAAAAGAGTAGTAGTGATGGAGCAGAATGAGGATGAGGATGAGGATGAGGATGAGGAGGAAGAAAGGGATTAG

Protein sequence

MKRIEALDGREEKISLVYFSRMSALGTIYKLKCVKRVVVMEQNEDEDEDEDEEEERD
Homology
[Close]
BLAST of CsaV3_5G027830 vs. NCBI nr
Match: KGN51451.1 (hypothetical protein Csa_5G549160 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 4.7e-12
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1  MKRIEALDGREEKISLVYFSRMSALGTIYKLKCVKRVVVM 41
          MKRIEALDGREEKISLVYFSRMSALGTIYKLKCVKRVVVM
Sbjct: 1  MKRIEALDGREEKISLVYFSRMSALGTIYKLKCVKRVVVM 40

[Close]
BLAST of CsaV3_5G027830 vs. TrEMBL
Match: tr|A0A0A0KUQ6|A0A0A0KUQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G549160 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-12
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1  MKRIEALDGREEKISLVYFSRMSALGTIYKLKCVKRVVVM 41
          MKRIEALDGREEKISLVYFSRMSALGTIYKLKCVKRVVVM
Sbjct: 1  MKRIEALDGREEKISLVYFSRMSALGTIYKLKCVKRVVVM 40

The following BLAST results are available for this feature:
BLAST of CsaV3_5G027830 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51451.14.7e-12100.00hypothetical protein Csa_5G549160 [Cucumis sativus][more]
BLAST of CsaV3_5G027830 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G027830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G027830 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KUQ6|A0A0A0KUQ6_CUCSA3.1e-12100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G549160 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G027830.1CsaV3_5G027830.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G027830CSPI05G19090Wild cucumber (PI 183967)cpicucB284
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G027830Cucumber (Gy14) v2cgybcucB232
CsaV3_5G027830Cucumber (Gy14) v1cgycucB300
CsaV3_5G027830Cucurbita maxima (Rimu)cmacucB0345
CsaV3_5G027830Cucurbita maxima (Rimu)cmacucB0888
CsaV3_5G027830Cucurbita moschata (Rifu)cmocucB0339
CsaV3_5G027830Cucurbita moschata (Rifu)cmocucB0879
CsaV3_5G027830Cucurbita pepo (Zucchini)cpecucB0229
CsaV3_5G027830Cucurbita pepo (Zucchini)cpecucB0547
CsaV3_5G027830Wild cucumber (PI 183967)cpicucB294
CsaV3_5G027830Bottle gourd (USVL1VR-Ls)cuclsiB352
CsaV3_5G027830Melon (DHL92) v3.5.1cucmeB350
CsaV3_5G027830Melon (DHL92) v3.6.1cucmedB342
CsaV3_5G027830Watermelon (Charleston Gray)cucwcgB394
CsaV3_5G027830Watermelon (97103) v1cucwmB441
CsaV3_5G027830Watermelon (97103) v2cucwmbB359
CsaV3_5G027830Wax gourdcucwgoB461
CsaV3_5G027830Silver-seed gourdcarcucB0871
CsaV3_5G027830Silver-seed gourdcarcucB0919