CsaV3_5G025910 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G025910
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	TMV resistance protein N-like
Location	chr5 : 21088187 .. 21088636 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAAAAACCTCCACCAAATTTCCTTTCACTTTGGGGACAATACAATCTCTTACCATGCTTGACAATGGAGGAACATTTATAGATCAAGCACCAAATGCTATCGCTCGTTTAAAGAGTCTTGAAACTTTGAATTGTGAAAGGCTTTCAAAAAATATTTGGTGGTCATTGAATGATTTGGTTGGGAGTAATGATGTTTTGCCTATTAGAGATTTGAATCTAAGTGATTGCAATATTGTGGACGAAGATATTCGTGATGATATCAAATGTCTTTTCTTATTGGAAATTCTTGACCTTAGCAAGAATTCTTTTGTAAGGCTCAAACAAAGCCTCCCTCGACTTACTAACTTAATAGCATTGTACTTGAATGATTGCTTCAACATTCAGCCACAACTATTGCCAAAGCTTCCAACAAGTTTGCATAACGTGGGAGGACAAAACTCATAA

mRNA sequence

ATGGCTGCAAAAACCTCCACCAAATTTCCTTTCACTTTGGGGACAATACAATCTCTTACCATGCTTGACAATGGAGGAACATTTATAGATCAAGCACCAAATGCTATCGCTCGTTTAAAGAGTCTTGAAACTTTGAATTGTGAAAGGCTTTCAAAAAATATTTGGTGGTCATTGAATGATTTGGTTGGGAGTAATGATGTTTTGCCTATTAGAGATTTGAATCTAAGTGATTGCAATATTGTGGACGAAGATATTCGTGATGATATCAAATGTCTTTTCTTATTGGAAATTCTTGACCTTAGCAAGAATTCTTTTGTAAGGCTCAAACAAAGCCTCCCTCGACTTACTAACTTAATAGCATTGTACTTGAATGATTGCTTCAACATTCAGCCACAACTATTGCCAAAGCTTCCAACAAGTTTGCATAACGTGGGAGGACAAAACTCATAA

Coding sequence (CDS)

ATGGCTGCAAAAACCTCCACCAAATTTCCTTTCACTTTGGGGACAATACAATCTCTTACCATGCTTGACAATGGAGGAACATTTATAGATCAAGCACCAAATGCTATCGCTCGTTTAAAGAGTCTTGAAACTTTGAATTGTGAAAGGCTTTCAAAAAATATTTGGTGGTCATTGAATGATTTGGTTGGGAGTAATGATGTTTTGCCTATTAGAGATTTGAATCTAAGTGATTGCAATATTGTGGACGAAGATATTCGTGATGATATCAAATGTCTTTTCTTATTGGAAATTCTTGACCTTAGCAAGAATTCTTTTGTAAGGCTCAAACAAAGCCTCCCTCGACTTACTAACTTAATAGCATTGTACTTGAATGATTGCTTCAACATTCAGCCACAACTATTGCCAAAGCTTCCAACAAGTTTGCATAACGTGGGAGGACAAAACTCATAA

Protein sequence

MAAKTSTKFPFTLGTIQSLTMLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLNDLVGSNDVLPIRDLNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIALYLNDCFNIQPQLLPKLPTSLHNVGGQNS

Homology

[Close]

BLAST of CsaV3_5G025910 vs. NCBI nr
Match: KGN51226.1 (hypothetical protein Csa_5G495930 [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 3.3e-78
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MAAKTSTKFPFTLGTIQSLTMLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLND 60
           MAAKTSTKFPFTLGTIQSLTMLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLND
Sbjct: 1   MAAKTSTKFPFTLGTIQSLTMLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLND 60

Query: 61  LVGSNDVLPIRDLNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIA 120
           LVGSNDVLPIRDLNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIA
Sbjct: 61  LVGSNDVLPIRDLNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIA 120

Query: 121 LYLNDCFNIQPQLLPKLPTSLHNVGGQNS 150
           LYLNDCFNIQPQLLPKLPTSLHNVGGQNS
Sbjct: 121 LYLNDCFNIQPQLLPKLPTSLHNVGGQNS 149

[Close]

BLAST of CsaV3_5G025910 vs. NCBI nr
Match: KGN58588.1 (hypothetical protein Csa_3G695840 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 2.0e-43
Identity = 94/110 (85.45%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MAAKTSTKFPFTLGTIQSLTMLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLND 60
           MAAKTSTKFPFTLGTIQSLTMLD  GTFI QAPNAI  L+SLETLNCER+S+NIWWSL D
Sbjct: 1   MAAKTSTKFPFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMD 60

Query: 61  LVGSNDVLPIRDLNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQ 111
           LVGSN VLPI DLN SDCN+VDEDI DDIKCL LLEILDLSKNSFVRLK+
Sbjct: 61  LVGSNGVLPITDLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRLKK 110

[Close]

BLAST of CsaV3_5G025910 vs. NCBI nr
Match: KGN52633.1 (hypothetical protein Csa_5G647550 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 4.0e-23
Identity = 70/146 (47.95%), Postives = 89/146 (60.96%), Query Frame = 0


Query: 4   KTSTKFPFTLGTIQSLTMLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLNDLVG 63
           K   K P  L  ++ L  LD GGT I   P     L++L  LNCERL  NIW SL  L  
Sbjct: 585 KNLDKIPPCLRYVKHLEELDIGGTSISTIP----FLENLRILNCERLKSNIWHSLAGL-A 644

Query: 64  SNDVLPIRDLNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIALYL 123
           +  +  + DLNLSDCN+VDEDI +D++    LEILDLS N F RL +S+ +L NL  LYL
Sbjct: 645 AQYLRSLNDLNLSDCNLVDEDIPNDLELFSSLEILDLSSNHFERLSESIKQLINLKVLYL 704

Query: 124 NDCFNIQPQLLPKLPTSLHNVGGQNS 150
           NDC  ++   +PKLP S+  VGG+ S
Sbjct: 705 NDCNKLKQ--VPKLPKSIKYVGGEKS 723

[Close]

BLAST of CsaV3_5G025910 vs. NCBI nr
Match: XP_011656285.1 (PREDICTED: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 4.0e-23
Identity = 70/146 (47.95%), Postives = 89/146 (60.96%), Query Frame = 0


Query: 4   KTSTKFPFTLGTIQSLTMLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLNDLVG 63
           K   K P  L  ++ L  LD GGT I   P     L++L  LNCERL  NIW SL  L  
Sbjct: 811 KNLDKIPPCLRYVKHLEELDIGGTSISTIP----FLENLRILNCERLKSNIWHSLAGL-A 870

Query: 64  SNDVLPIRDLNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIALYL 123
           +  +  + DLNLSDCN+VDEDI +D++    LEILDLS N F RL +S+ +L NL  LYL
Sbjct: 871 AQYLRSLNDLNLSDCNLVDEDIPNDLELFSSLEILDLSSNHFERLSESIKQLINLKVLYL 930

Query: 124 NDCFNIQPQLLPKLPTSLHNVGGQNS 150
           NDC  ++   +PKLP S+  VGG+ S
Sbjct: 931 NDCNKLKQ--VPKLPKSIKYVGGEKS 949

[Close]

BLAST of CsaV3_5G025910 vs. NCBI nr
Match: AGH33857.1 (Prv splice variant B [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 5.4e-20
Identity = 62/127 (48.82%), Postives = 79/127 (62.20%), Query Frame = 0


Query: 23  DNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLNDLVGSNDVLPIRDLNLSDCNIVD 82
           D GGT I   P     +++L  LNCERL   IW SL  L  +     ++DLNLSDCN+VD
Sbjct: 780 DIGGTSISTIP----FVENLRILNCERLKSIIWHSLASL-PTEYFSSLKDLNLSDCNLVD 839

Query: 83  EDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIALYLNDCFNIQPQLLPKLPTSLH 142
           EDI  D++    LEILDL  N F RL +S+ +L NL ALYLNDC  ++   +PKLP S+ 
Sbjct: 840 EDIPSDLELFSSLEILDLGSNHFERLSESIEQLINLKALYLNDCHKLKQ--VPKLPESIR 899

Query: 143 NVGGQNS 150
            VGG+ S
Sbjct: 900 YVGGEKS 899

[Close]

BLAST of CsaV3_5G025910 vs. TAIR10
Match: AT2G17050.1 (disease resistance protein (TIR-NBS-LRR class), putative)

HSP 1 Score: 42.0 bits (97), Expect = 3.9e-04
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 73  LNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIALYLNDCFNIQPQ 132
           L LS   ++D  I  +I  L  L+ LDLS N+F +L +S+ +  NL +L L  C N++  
Sbjct: 808 LFLSKAYLLDIHIPQEICNLLSLKTLDLSGNNFGKLPESIKQFRNLESLILCHCKNLES- 867

Query: 133 LLPKLPTSL 142
            LP+LP SL
Sbjct: 868 -LPELPQSL 874

[Close]

BLAST of CsaV3_5G025910 vs. TAIR10
Match: AT5G48770.1 (Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 41.6 bits (96), Expect = 5.0e-04
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 65  NDVLPIRDLNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIALYLN 124
           +D L + +LNL + NI  E I DDI  L +L+ LDLS N F  L   +  L+++ +L L 
Sbjct: 800 SDFLWLTELNLINLNI--ESIPDDIGLLQVLQKLDLSGNDFTCLPTDMENLSSMKSLRLC 859

Query: 125 DCFNIQPQLLPK 137
           +C  +  Q LPK
Sbjct: 860 NCLKL--QTLPK 867

[Close]

BLAST of CsaV3_5G025910 vs. TAIR10
Match: AT1G72840.2 (Disease resistance protein (TIR-NBS-LRR class))

HSP 1 Score: 40.8 bits (94), Expect = 8.6e-04
Identity = 41/119 (34.45%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 17  QSLTMLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLNDLVGSNDVLPIRDLNLS 76
           QS+T L N G F             L++L+ +R S  +       +   D   + +L L 
Sbjct: 755 QSVTHLLNSGFF------------GLKSLDIKRFSYRLDPVNFSCLSFADFPCLTELKLI 814

Query: 77  DCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIALYLNDCFNIQ--PQL 134
           + NI  EDI +DI  L LLE LDL  N FV L  S+ +L  L  L L++C  ++  PQL
Sbjct: 815 NLNI--EDIPEDICQLQLLETLDLGGNDFVYLPTSMGQLAMLKYLSLSNCRRLKALPQL 859

[Close]

BLAST of CsaV3_5G025910 vs. Swiss-Prot
Match: sp|Q40392|TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa OX=35889 GN=N PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-08
Identity = 41/135 (30.37%), Postives = 69/135 (51.11%), Query Frame = 0


Query: 10  PFTLGTIQSLTMLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLNDLVGSNDVLP 69
           P  +G + +L + D   T I + P++I RL  L  L        + +    +  +  +  
Sbjct: 777 PEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFPPV--AEGLHS 836

Query: 70  IRDLNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIALYLNDCFNI 129
           +  LNLS CN++D  + ++I  L  L+ LDLS+N+F  L  S+ +L  L +L L DC  +
Sbjct: 837 LEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRL 896

Query: 130 QPQLLPKLPTSLHNV 145
               LP+LP  L+ +
Sbjct: 897 TQ--LPELPPELNEL 907

[Close]

BLAST of CsaV3_5G025910 vs. TrEMBL
Match: tr|A0A0A0KU16|A0A0A0KU16_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G495930 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 2.2e-78
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MAAKTSTKFPFTLGTIQSLTMLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLND 60
           MAAKTSTKFPFTLGTIQSLTMLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLND
Sbjct: 1   MAAKTSTKFPFTLGTIQSLTMLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLND 60

Query: 61  LVGSNDVLPIRDLNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIA 120
           LVGSNDVLPIRDLNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIA
Sbjct: 61  LVGSNDVLPIRDLNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIA 120

Query: 121 LYLNDCFNIQPQLLPKLPTSLHNVGGQNS 150
           LYLNDCFNIQPQLLPKLPTSLHNVGGQNS
Sbjct: 121 LYLNDCFNIQPQLLPKLPTSLHNVGGQNS 149

[Close]

BLAST of CsaV3_5G025910 vs. TrEMBL
Match: tr|A0A0A0L9U0|A0A0A0L9U0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G695840 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-43
Identity = 94/110 (85.45%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MAAKTSTKFPFTLGTIQSLTMLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLND 60
           MAAKTSTKFPFTLGTIQSLTMLD  GTFI QAPNAI  L+SLETLNCER+S+NIWWSL D
Sbjct: 1   MAAKTSTKFPFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMD 60

Query: 61  LVGSNDVLPIRDLNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQ 111
           LVGSN VLPI DLN SDCN+VDEDI DDIKCL LLEILDLSKNSFVRLK+
Sbjct: 61  LVGSNGVLPITDLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRLKK 110

[Close]

BLAST of CsaV3_5G025910 vs. TrEMBL
Match: tr|A0A0A0KST1|A0A0A0KST1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647550 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-23
Identity = 70/146 (47.95%), Postives = 89/146 (60.96%), Query Frame = 0


Query: 4   KTSTKFPFTLGTIQSLTMLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLNDLVG 63
           K   K P  L  ++ L  LD GGT I   P     L++L  LNCERL  NIW SL  L  
Sbjct: 585 KNLDKIPPCLRYVKHLEELDIGGTSISTIP----FLENLRILNCERLKSNIWHSLAGL-A 644

Query: 64  SNDVLPIRDLNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIALYL 123
           +  +  + DLNLSDCN+VDEDI +D++    LEILDLS N F RL +S+ +L NL  LYL
Sbjct: 645 AQYLRSLNDLNLSDCNLVDEDIPNDLELFSSLEILDLSSNHFERLSESIKQLINLKVLYL 704

Query: 124 NDCFNIQPQLLPKLPTSLHNVGGQNS 150
           NDC  ++   +PKLP S+  VGG+ S
Sbjct: 705 NDCNKLKQ--VPKLPKSIKYVGGEKS 723

[Close]

BLAST of CsaV3_5G025910 vs. TrEMBL
Match: tr|M4R4L2|M4R4L2_CUCME (Prv splice variant B OS=Cucumis melo OX=3656 GN=Prv PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.6e-20
Identity = 62/127 (48.82%), Postives = 79/127 (62.20%), Query Frame = 0


Query: 23  DNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLNDLVGSNDVLPIRDLNLSDCNIVD 82
           D GGT I   P     +++L  LNCERL   IW SL  L  +     ++DLNLSDCN+VD
Sbjct: 780 DIGGTSISTIP----FVENLRILNCERLKSIIWHSLASL-PTEYFSSLKDLNLSDCNLVD 839

Query: 83  EDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIALYLNDCFNIQPQLLPKLPTSLH 142
           EDI  D++    LEILDL  N F RL +S+ +L NL ALYLNDC  ++   +PKLP S+ 
Sbjct: 840 EDIPSDLELFSSLEILDLGSNHFERLSESIEQLINLKALYLNDCHKLKQ--VPKLPESIR 899

Query: 143 NVGGQNS 150
            VGG+ S
Sbjct: 900 YVGGEKS 899

[Close]

BLAST of CsaV3_5G025910 vs. TrEMBL
Match: tr|A0A1S4E2G9|A0A1S4E2G9_CUCME (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103498647 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.7e-20
Identity = 62/127 (48.82%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 23  DNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLNDLVGSNDVLPIRDLNLSDCNIVD 82
           D GGT I   P     +++L  LNCERL   IW SL  L  +     ++DLNLSDCN+VD
Sbjct: 845 DIGGTSISTIP----FVENLRILNCERLKSIIWHSLASL-PTEYFSSLKDLNLSDCNLVD 904

Query: 83  EDIRDDIKCLFLLEILDLSKNSFVRLKQSLPRLTNLIALYLNDCFNIQPQLLPKLPTSLH 142
           EDI  D++    LEILDL  N F RL +S+ +L NL  LYLNDC  ++   LPKLP S+ 
Sbjct: 905 EDIPSDLELFSSLEILDLGSNHFERLSESIEQLINLKVLYLNDCHKLKQ--LPKLPQSIR 964

Query: 143 NVGGQNS 150
            VGG+ S
Sbjct: 965 YVGGEKS 964

The following BLAST results are available for this feature:

BLAST of CsaV3_5G025910 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51226.1	3.3e-78	100.00	hypothetical protein Csa_5G495930 [Cucumis sativus]	[more]
KGN58588.1	2.0e-43	85.45	hypothetical protein Csa_3G695840 [Cucumis sativus]	[more]
KGN52633.1	4.0e-23	47.95	hypothetical protein Csa_5G647550 [Cucumis sativus]	[more]
XP_011656285.1	4.0e-23	47.95	PREDICTED: TMV resistance protein N-like [Cucumis sativus]	[more]
AGH33857.1	5.4e-20	48.82	Prv splice variant B [Cucumis melo]	[more]

BLAST of CsaV3_5G025910 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G17050.1	3.9e-04	40.58	disease resistance protein (TIR-NBS-LRR class), putative	[more]
AT5G48770.1	5.0e-04	40.28	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT1G72840.2	8.6e-04	34.45	Disease resistance protein (TIR-NBS-LRR class)	[more]

BLAST of CsaV3_5G025910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q40392\|TMVRN_NICGU	2.5e-08	30.37	TMV resistance protein N OS=Nicotiana glutinosa OX=35889 GN=N PE=1 SV=1	[more]

BLAST of CsaV3_5G025910 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KU16\|A0A0A0KU16_CUCSA	2.2e-78	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G495930 PE=4 SV=1	[more]
tr\|A0A0A0L9U0\|A0A0A0L9U0_CUCSA	1.3e-43	85.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G695840 PE=4 SV=1	[more]
tr\|A0A0A0KST1\|A0A0A0KST1_CUCSA	2.6e-23	47.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647550 PE=3 SV=1	[more]
tr\|M4R4L2\|M4R4L2_CUCME	3.6e-20	48.82	Prv splice variant B OS=Cucumis melo OX=3656 GN=Prv PE=4 SV=1	[more]
tr\|A0A1S4E2G9\|A0A1S4E2G9_CUCME	4.7e-20	48.82	TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103498647 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G025910.1	CsaV3_5G025910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 3..146 e-value: 2.8E-14 score: 54.3
None	No IPR available	PANTHER	PTHR45470	FAMILY NOT NAMED	coord: 6..143
None	No IPR available	SUPERFAMILY	SSF52047	RNI-like	coord: 9..141

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G025910	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G025910	Bottle gourd (USVL1VR-Ls)	cuclsiB370
CsaV3_5G025910	Melon (DHL92) v3.5.1	cucmeB359
CsaV3_5G025910	Melon (DHL92) v3.6.1	cucmedB351
CsaV3_5G025910	Watermelon (Charleston Gray)	cucwcgB362
CsaV3_5G025910	Watermelon (97103) v1	cucwmB387
CsaV3_5G025910	Watermelon (97103) v2	cucwmbB424
CsaV3_5G025910	Wax gourd	cucwgoB475
CsaV3_5G025910	Silver-seed gourd	carcucB0297
CsaV3_5G025910	Silver-seed gourd	carcucB0724
CsaV3_5G025910	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G025910	Cucumber (Gy14) v1	cgycucB422
CsaV3_5G025910	Cucurbita maxima (Rimu)	cmacucB0354
CsaV3_5G025910	Cucurbita maxima (Rimu)	cmacucB0862
CsaV3_5G025910	Cucurbita maxima (Rimu)	cmacucB0892
CsaV3_5G025910	Cucurbita moschata (Rifu)	cmocucB0349
CsaV3_5G025910	Cucurbita moschata (Rifu)	cmocucB0848
CsaV3_5G025910	Cucurbita pepo (Zucchini)	cpecucB0211
CsaV3_5G025910	Cucurbita pepo (Zucchini)	cpecucB0519
CsaV3_5G025910	Cucurbita pepo (Zucchini)	cpecucB0550