CsaV3_5G025700 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G025700
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRNA binding protein
Locationchr5 : 20826024 .. 20830681 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCAGAAATTGTTAGTACTGGAGTTTGTGTACGCATTATCAACCTTCCTAGAAAAAAGAACATTCACAGAGACCTGGTCGTGGCTTTTAAAGGGTTTCCTGGAATAATCAATATAACTCCTGCAGTCATTGGAAACAAAAAGACTAGGGATCCAGTCTGCAAGGGTTTTGCATTTGTTGATTGCAAATCTGAAGGAGATGCCTTAAGGTATGTTTATGAGAAGAAATTGTAGAACTCAAAGAAATTTAGTTCAAATCTTTTTCATAAGCAAGCTAGCTTCAAAATACCAAACTTATTTAGATGAAAAAGGTAGCAAGGCCGTATTAAAATTGGTGAAGTACATTCTTATTTCAAAACTCTTGAATGGTTATTGTCTGATTCTTATTTCACCACCCTTTTTTTATAATAAAAACATTTTCTGATGAATGTACACCAAAAGATGACTACAGTAGAAGCCTACAATTTGGAGATTAAGTTAGATAAGCTGAAGTGAGTAAATGGGTGCTTAGTTTTGCACACAAAGGCGAAAAAAGAAGAAAAAAAAAGAAAAAACTAAATCCATAAAACAATCAAAAGCGGAAAAAGAGACTTCGAAAAGACGTCTTGCTCGACGCAAAAATTTCAAAAGAAAGTTTACCTGCCAATCAAATTGTCTTCTTAGTACCACCAAAAGGATGACTGATCAGAAATGGTGCTAGAAGATCAAAAATATTGTTGGCGAATTGAAATGATCGTCCAAAAGCTTAAAAAGTAGTCTGTCAGAAACTAGATGCAAAGGAACAATGCATAAAAAATGAGTTGGTACCTCAGCTCACATGTGGCACCAAAAAAGATAAAAGGTGCGTGAAGGACATTCTGATAGGAAAGACGTCAAAGGGATATTAAAGGTATGCTAGTAATCAGTGGAGTAGTTTGTTAGGGAAGTTGGTTGTAAATAGAGGGAAAGGGGAGTGGAGAAGATAAGCCATATTTTGGAATATGAATTAGGGCTTGAGAGTTATGTTGGGAGGGTTCAAGTACCTGGAACACAAGCATTTTCGTTATATATGTTATTATCAATATATCTGGTTCTATCATATTCTCCTTTCACTATCGATGGTTTTTTTTTATATTTTCTTGTAGAAAAGTAGGGGAAATACAAAAAGGCATATTACTAGTTTTTTTCATTTAAAACAATTTTGTTGGCTTGTAGATGTCCTTTATTGGGAAATTGCTAATAAATGGGAAGCCTTCTCTCTTTGCCTTCTAGAGTTCTTTCTTTCCCCACCTTTTTAGTAAGAATGGCGGTAGAGTCTAGATTTGTTTTAGTAAGAATGACTCTAAAGTCTAGATTCTAGCAAGATCTTGTTTGTTTTGTGTCGGCCAAATTCACAAAAGGCATTGGGAATGGCTATTCTGGCGCAGAAACCCACGTCGGTCCGAGCGTCGGCAATACTGCGTCGTCATAGGCAAAGCCGACGTGCAACACGACGACTTCGGCAAAATTGTTTGCCTGATGGGGACTATGATCGACTGGCGTACGACGTCGGGGAAGCATTGTCTGACGTGGTCAACGCGTCGGTAATGCGTCCATGTCCGACGTGTTTTGTGGGTCGAGAAACATTTTTATAATATTTTTTTTTTGGTGTTGGGTTCGAATTCGACTTAAACTCAATCAAATTCTAAACACAATTAGTGTAAAATTAATAAAAAATATTTAAATACCAAATTAAATTTATATTAAAATTAATTCAAATATTAAAAAACTACACGTTTGTAGGTTTCGAAATTACATGAATAATAAGAAGTAAAAACAAAAAAAAATAAAAACATAATTCTAAGCACCGACGCCAGTTTTCCCAACTTCTGCACATTGTCTCAGCATGACTTTAGCTAATATGATAATAGGGATATGGGCAGAATTGCAAAGATGGAAGTTGAACATTATTATGAGGTGCGTCGAGGGAAATACGAGGTTGCTTCAAACAGAAACGACCTTTGCTTTGGTGGTTCCAAAAAATTGATTGGGAAGAGAGGAGCAGTAAATGACATGATCGAGAACCGAAGTCATAGAAAGTTCTCCACTTGCATATTAAGTAAAGGTCGTTTCTGTTTGAAGCAACCTCATATTTCCCTCGATGCACCTCGTAATAATGTTTAACTTCCCTCTTTGGACATTCTGCTCATGTCCTATGACCATACTAGCTGTTACTATTTGACTTTCTAATATAAGTCTGATTTCTTGATGTTGAGCTTGTCCATTGCATATTCGAGTTTTAAATTCTTGCACCTAAGCTCTTCTATAGCCTTCTCATACTCTTCATTTTCAATAGCAGATTGTAATTCTGAAATGTACAAATTTAATATCAACGTACATACAATATACAATCTATACATACAATTTATATAATTCAATGTCAAGATATGTTAATAAAATGCTTACTTTAGGACAATAGATAGATGTAAGTATCGTGAAAAATTCAATAAAAAACGTACAGATTCAACTCCAAATTCAATTTCAAATTCAACTTCAATCTTAAATCCGAACAACACTAAATTCGAATGTAAATTAAAACCTACGACTTAAATGAAAATCTAAATACTAAAACTAATTTGAAATCTAAAATCTAAAACTAATAACTAAAACAATCTAAACACTAAACTAAACGCTAGAATACGTGAAAAAATATAACTAGAAAATTGTGGATATCAAAATTAAAAAAGACGAGAAGATAAATATGTGGATGTAAAAAATAAAAGAGACAGAGAAGATAAAATGGAGATTCACATTCACATGTACAACTAAAACCAACTCATGAATATTTTTTAGCCATCTACACATGCCATATACAATCTACCATTTACAAATTATACATTCAATATACAATATATGTACAACCTAATCTACAATCTACAATATATTAATATATATTTATTTAGAAATAAAAAATAATAAATATAACATTTTTACCGATAAAGACAACGAAGTAAGTGGACGACGAATGAGGACGGTGGGCGACGAACGGCAATGGCTGCAGGCATCGACTCGATGGATGGTGGAGTCTCTTCTCTCTTTTGTTTCGTCTTTCTCTTTACCCTTTTCTCTCTATTGTGTTCTATGTTCTGTGAACATAGAACTTTAATAATAGGGGCGTCCCGAAAATGTCGTGAGAACCCCACAATTGCGACGCCATAAGTGAGGGCGTCGTTTTTTCTCTATGTAATGTCGACGCAGTCACTTATGGCTTCATGCAAAAGTTTTCAAAATCTTTTCAAACGTCACTATTTCTCACTACGTTGTCAGCCCTTACGTCGGCAAAAGGTAGGCCTATAGACGTTCCACTTTTTTGAATCGCGGAAAGGTTGTCATAATTATTTAAAGGTTCAACCTTTGCCGATGTGGTTAACGCTAACGTCGTTGTAGACGGACCGATGGCCGATGCCATGCACGTATACGTAGCGATTGATTATAATTTTAATAATAACTTTCCCTTTCTCTGACGCTATACACTTCCACGTTGGCCTTAGATGGGGCATCGACGACCGACGTGTACATGCATGGTCGGGATAACTCCGATTTCTTGTAGTGAAAGTCATTTTCCATTAAAATAAAAATTGAAGCTATTTACATTTTTTGTTTGTTATGAGGTCATCAAAGCATCAACTATGTAAGACCACATCTTTACATGTCTTGGCACTATCTTTTTGAATGGTTTCTAGGTTTAATCTAGAACATAACAACATTTCATGCATCCATAATCCTTGATAAATTGGTTAAAAGAGTGACATTTATTTTCTTCAGTTTTCTGCAAGCATTTGCTGGACGGTATCTTACGTTTGGAAGGGTTCAGAAGCAAATAAAATGTGAAATAATGAATCGACATTTCATGTCTTGGCACTATCTTTTTGAATGGTTTCTAGGTTTAATCTAGAACATAACAACATTTCATGCATCCATAATCCTTGATAAATTGGTTAAAAGAGTGACATTTATTTTCTTCAGTTTTCTGCAAGCATTTTCTGGACGGTATCTTACGTTTGGAAGGGTTCAGAAGCAAATAAAATGTGAAATAATGAATCGACAAACTTCGAGTTCCGCTCGCAATAGTTCAATGAGCAGTACCAATCATTCTCGACTAAGTATTCTTGAAGAGGAAGCAGAGCAGTTTGTTGACATTGACGTGGATTTAGCCAGTGAAGCCACAAGAACAAAAACTGAGGATATCGAAGACGATTTGGCTTATGTCAGTGAATCACATTCGCATGAGGAGGATGATAATGGCGTAGAGTCAAGAACAGAGTTCACAATTCAGTCACCATCTGAAAAGGAAGTAAATAAAATTGAACTAGAAGAAATTCTTCCTCAAGGAAGAGAGGAAATTCATAGGGAAGTTTCACCAATCAAAAGAAAAACAAAGGTTTCAAAGAAAAAGCAACCGAAGGAAAAAGGAGAGAAGAAATTATTAACAGAAATTCCAGGATCTGCCAAAAGGTCTTGCTGCTTAAAGTGATTGTTTAGAACATGGTTTTACATTTAATGCTTTGAAAGACTAACTTAAATTTTCCTTTTATGTAATGAATAAAATGCAGGTTAAGGATAAAGGAGAAGGCTGTCTTAACAGACGTGTACTCAAGATATGGAAAGAAATCAGCTTTGGTTTCACAAGAAGGGAACTAA

mRNA sequence

CCAGAAATTGTTAGTACTGGAGTTTGTGTACGCATTATCAACCTTCCTAGAAAAAAGAACATTCACAGAGACCTGGTCGTGGCTTTTAAAGGGTTTCCTGGAATAATCAATATAACTCCTGCAGTCATTGGAAACAAAAAGACTAGGGATCCAGTCTGCAAGGGTTTTGCATTTGTTGATTGCAAATCTGAAGGAGATGCCTTAAGTTTTCTGCAAGCATTTTCTGGACGGTATCTTACGTTTGGAAGGGTTCAGAAGCAAATAAAATGTGAAATAATGAATCGACAAACTTCGAGTTCCGCTCGCAATAGTTCAATGAGCAGTACCAATCATTCTCGACTAAGTATTCTTGAAGAGGAAGCAGAGCAGTTTGTTGACATTGACGTGGATTTAGCCAGTGAAGCCACAAGAACAAAAACTGAGGATATCGAAGACGATTTGGCTTATGTCAGTGAATCACATTCGCATGAGGAGGATGATAATGGCGTAGAGTCAAGAACAGAGTTCACAATTCAGTCACCATCTGAAAAGGAAGTAAATAAAATTGAACTAGAAGAAATTCTTCCTCAAGGAAGAGAGGAAATTCATAGGGAAGTTTCACCAATCAAAAGAAAAACAAAGGTTTCAAAGAAAAAGCAACCGAAGGAAAAAGGAGAGAAGAAATTATTAACAGAAATTCCAGGATCTGCCAAAAGGTTAAGGATAAAGGAGAAGGCTGTCTTAACAGACGTGTACTCAAGATATGGAAAGAAATCAGCTTTGGTTTCACAAGAAGGGAACTA

Coding sequence (CDS)

CCAGAAATTGTTAGTACTGGAGTTTGTGTACGCATTATCAACCTTCCTAGAAAAAAGAACATTCACAGAGACCTGGTCGTGGCTTTTAAAGGGTTTCCTGGAATAATCAATATAACTCCTGCAGTCATTGGAAACAAAAAGACTAGGGATCCAGTCTGCAAGGGTTTTGCATTTGTTGATTGCAAATCTGAAGGAGATGCCTTAAGTTTTCTGCAAGCATTTTCTGGACGGTATCTTACGTTTGGAAGGGTTCAGAAGCAAATAAAATGTGAAATAATGAATCGACAAACTTCGAGTTCCGCTCGCAATAGTTCAATGAGCAGTACCAATCATTCTCGACTAAGTATTCTTGAAGAGGAAGCAGAGCAGTTTGTTGACATTGACGTGGATTTAGCCAGTGAAGCCACAAGAACAAAAACTGAGGATATCGAAGACGATTTGGCTTATGTCAGTGAATCACATTCGCATGAGGAGGATGATAATGGCGTAGAGTCAAGAACAGAGTTCACAATTCAGTCACCATCTGAAAAGGAAGTAAATAAAATTGAACTAGAAGAAATTCTTCCTCAAGGAAGAGAGGAAATTCATAGGGAAGTTTCACCAATCAAAAGAAAAACAAAGGTTTCAAAGAAAAAGCAACCGAAGGAAAAAGGAGAGAAGAAATTATTAACAGAAATTCCAGGATCTGCCAAAAGGTTAAGGATAAAGGAGAAGGCTGTCTTAACAGACGTGTACTCAAGATATGGAAAGAAATCAGCTTTGGTTTCACAAGAAGGGAACTA

Protein sequence

PEIVSTGVCVRIINLPRKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVDCKSEGDALSFLQAFSGRYLTFGRVQKQIKCEIMNRQTSSSARNSSMSSTNHSRLSILEEEAEQFVDIDVDLASEATRTKTEDIEDDLAYVSESHSHEEDDNGVESRTEFTIQSPSEKEVNKIELEEILPQGREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKAVLTDVYSRYGKKSALVSQEGNX
Homology
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BLAST of CsaV3_5G025700 vs. NCBI nr
Match: KGN51204.1 (hypothetical protein Csa_5G488800 [Cucumis sativus])

HSP 1 Score: 469.2 bits (1206), Expect = 9.4e-129
Identity = 259/260 (99.62%), Postives = 260/260 (100.00%), Query Frame = 0 

Query: 1   PEIVSTGVCVRIINLPRKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVD 60
           PEIVSTGVCVRIINLPRKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVD
Sbjct: 202 PEIVSTGVCVRIINLPRKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVD 261

Query: 61  CKSEGDALSFLQAFSGRYLTFGRVQKQIKCEIMNRQTSSSARNSSMSSTNHSRLSILEEE 120
           CKSEGDALSFLQAF+GRYLTFGRVQKQIKCEIMNRQTSSSARNSSMSSTNHSRLSILEEE
Sbjct: 262 CKSEGDALSFLQAFAGRYLTFGRVQKQIKCEIMNRQTSSSARNSSMSSTNHSRLSILEEE 321

Query: 121 AEQFVDIDXXXASXXXXXXXEDIEDDLAYVSESHSHEEDDNGVESRTEFTIQSPSEKEVN 180
           AEQFVDIDXXXASXXXXXXXEDIEDDLAYVSESHSHEEDDNGVESRTEFTIQSPSEKEVN
Sbjct: 322 AEQFVDIDXXXASXXXXXXXEDIEDDLAYVSESHSHEEDDNGVESRTEFTIQSPSEKEVN 381

Query: 181 KIELEEILPQGREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKAV 240
           KIELEEILPQGREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKAV
Sbjct: 382 KIELEEILPQGREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKAV 441

Query: 241 LTDVYSRYGKKSALVSQEGN 261
           LTDVYSRYGKKSALVSQEGN
Sbjct: 442 LTDVYSRYGKKSALVSQEGN 461

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BLAST of CsaV3_5G025700 vs. NCBI nr
Match: XP_008465688.1 (PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo] >XP_008465689.1 PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo] >XP_008465690.1 PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo] >XP_008465692.1 PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo] >XP_016903478.1 PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo])

HSP 1 Score: 422.2 bits (1084), Expect = 1.3e-114
Identity = 228/261 (87.36%), Postives = 241/261 (92.34%), Query Frame = 0 

Query: 1   PEIVSTGVCVRIINLPRKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVD 60
           PEIVSTGV VRIINLP+KKNI+RDLVVAFKGFPGIINITPAVIGNKKTRDP+CKGFAFVD
Sbjct: 170 PEIVSTGVRVRIINLPKKKNINRDLVVAFKGFPGIINITPAVIGNKKTRDPICKGFAFVD 229

Query: 61  CKSEGDALSFLQAFSGRYLTFGRVQKQIKCEIMNRQTSSSARNSSMSSTNHSRLSILEEE 120
           CKSEGDALSFLQAFSGRYL+FGRVQKQIKCEIMNRQTSSSAR SS+ STN+SRLSILEEE
Sbjct: 230 CKSEGDALSFLQAFSGRYLSFGRVQKQIKCEIMNRQTSSSARKSSVGSTNNSRLSILEEE 289

Query: 121 AEQFVDIDXXXASXXXXXXXEDIEDDLAYVSESHSHEEDDNGVESRTEFTIQSPSEKEVN 180
           AEQF DID   AS       E+ EDDLAYV+ESHSH+ DDNGVESRTEF IQSPSEKEVN
Sbjct: 290 AEQFADIDVDLASEAARTKIEENEDDLAYVNESHSHDVDDNGVESRTEFKIQSPSEKEVN 349

Query: 181 KI-ELEEILPQGREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKA 240
           KI ELE IL QG+EEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKA
Sbjct: 350 KIDELEGILLQGKEEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKA 409

Query: 241 VLTDVYSRYGKKSALVSQEGN 261
           VLTDVYSRYGKKSAL+S+EG+
Sbjct: 410 VLTDVYSRYGKKSALLSEEGS 430

[Close]
BLAST of CsaV3_5G025700 vs. NCBI nr
Match: XP_023547227.1 (uncharacterized protein LOC111806104 [Cucurbita pepo subsp. pepo] >XP_023547228.1 uncharacterized protein LOC111806104 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 378.6 bits (971), Expect = 1.7e-101
Identity = 202/261 (77.39%), Postives = 224/261 (85.82%), Query Frame = 0 

Query: 1   PEIVSTGVCVRIINLPRKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVD 60
           PEI +TGV VR+INLP+K+NIHRDL++AFKGFPGI+NITPAVIGNKKTRDP+CKGFAFVD
Sbjct: 173 PEIANTGVRVRVINLPKKRNIHRDLMLAFKGFPGIVNITPAVIGNKKTRDPICKGFAFVD 232

Query: 61  CKSEGDALSFLQAFSGRYLTFGRVQKQIKCEIMNRQTSSSARNSSMSSTNHSRLSILEEE 120
           CKSEGDA+SFLQ+FSG+YLTFGRVQKQIKCEIMN+QTS+SAR  S+ STN SRLSILEEE
Sbjct: 233 CKSEGDAISFLQSFSGQYLTFGRVQKQIKCEIMNQQTSNSAREISVVSTNRSRLSILEEE 292

Query: 121 AEQFVDIDXXXASXXXXXXXEDIEDDLAYVSESHSHEEDDNGVESRTEFTIQSPSEKEVN 180
           A Q  D+D   A        EDIED+LAYVSE HS +EDDNGVESRTE  I  PSEKE++
Sbjct: 293 AGQVADMDMDLAGEVERTRVEDIEDNLAYVSELHSDDEDDNGVESRTESKILPPSEKELD 352

Query: 181 KI-ELEEILPQGREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKA 240
           KI ELEEI PQGREE+HRE  PI  KTKVSKKKQPKEKGEKK    IPGSAKRLRIKEKA
Sbjct: 353 KIHELEEIPPQGREEVHREAPPINMKTKVSKKKQPKEKGEKKSSLVIPGSAKRLRIKEKA 412

Query: 241 VLTDVYSRYGKKSALVSQEGN 261
           VLTDVYSRYGKKSA+ S+EGN
Sbjct: 413 VLTDVYSRYGKKSAVASKEGN 433

[Close]
BLAST of CsaV3_5G025700 vs. NCBI nr
Match: XP_022946475.1 (uncharacterized protein LOC111450524 [Cucurbita moschata] >XP_022946476.1 uncharacterized protein LOC111450524 [Cucurbita moschata])

HSP 1 Score: 373.6 bits (958), Expect = 5.4e-100
Identity = 201/261 (77.01%), Postives = 223/261 (85.44%), Query Frame = 0 

Query: 1   PEIVSTGVCVRIINLPRKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVD 60
           PEI +TGV VRIINLP+K+NIHRDL++AF+GFPGI+NITPAVIGNKKTRDP+CKGFAFVD
Sbjct: 173 PEIANTGVRVRIINLPKKRNIHRDLMLAFEGFPGIVNITPAVIGNKKTRDPICKGFAFVD 232

Query: 61  CKSEGDALSFLQAFSGRYLTFGRVQKQIKCEIMNRQTSSSARNSSMSSTNHSRLSILEEE 120
           CKSEGDA+SFLQ+FSG+YLTFGRVQKQIKCEIMN+QTS+SAR  S+ STN SRLSILEEE
Sbjct: 233 CKSEGDAISFLQSFSGQYLTFGRVQKQIKCEIMNQQTSNSAREISVVSTNRSRLSILEEE 292

Query: 121 AEQFVDIDXXXASXXXXXXXEDIEDDLAYVSESHSHEEDDNGVESRTEFTIQSPSEKEVN 180
           AEQ  DID   A        ED+ED+LAYVSE  S +EDDNGVESRTE  I   SEKE++
Sbjct: 293 AEQVADIDMDLAGEVERTRVEDVEDNLAYVSELDSDDEDDNGVESRTESKILPLSEKELD 352

Query: 181 KI-ELEEILPQGREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKA 240
           KI ELEE+ PQGREE+HRE  PI  KTKVSKKKQPKEKGEKK    IPGSAKRLRIKEKA
Sbjct: 353 KIHELEEMPPQGREEVHREAPPINMKTKVSKKKQPKEKGEKKSSLVIPGSAKRLRIKEKA 412

Query: 241 VLTDVYSRYGKKSALVSQEGN 261
           VLTDVYSRYGKKSAL S+EGN
Sbjct: 413 VLTDVYSRYGKKSALASKEGN 433

[Close]
BLAST of CsaV3_5G025700 vs. NCBI nr
Match: XP_022999318.1 (uncharacterized protein LOC111493728 [Cucurbita maxima] >XP_022999319.1 uncharacterized protein LOC111493728 [Cucurbita maxima])

HSP 1 Score: 372.5 bits (955), Expect = 1.2e-99
Identity = 200/261 (76.63%), Postives = 224/261 (85.82%), Query Frame = 0 

Query: 1   PEIVSTGVCVRIINLPRKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVD 60
           PEI +TGV VR+INLP+K+NIHRDL++AFKGFPGI+NITPAVIGNKKTRDP+CKGFAFVD
Sbjct: 192 PEIANTGVRVRVINLPKKRNIHRDLMLAFKGFPGIVNITPAVIGNKKTRDPICKGFAFVD 251

Query: 61  CKSEGDALSFLQAFSGRYLTFGRVQKQIKCEIMNRQTSSSARNSSMSSTNHSRLSILEEE 120
           CKSEGDA+SFLQ+FSG+YLTFGRVQKQIKCEIMN+QTS+ AR  S+ STNHSRLSILEE+
Sbjct: 252 CKSEGDAISFLQSFSGQYLTFGRVQKQIKCEIMNQQTSNLAREISVVSTNHSRLSILEEK 311

Query: 121 AEQFVDIDXXXASXXXXXXXEDIEDDLAYVSESHSHEEDDNGVESRTEFTIQSPSEKEVN 180
           AEQ  D+D   A        EDIED+LAYVSE HS ++DDNGVESRTE  I  PSEKE++
Sbjct: 312 AEQVADMDMDLAGEVERTRVEDIEDNLAYVSELHS-DDDDNGVESRTESKILPPSEKELD 371

Query: 181 KI-ELEEILPQGREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKA 240
           KI ELEEI PQGREE+HRE  PI  KT+VSKKKQPKEKGE K    IPGSAKRLRIKEKA
Sbjct: 372 KIHELEEIPPQGREEVHREAPPIYMKTRVSKKKQPKEKGENKSSLVIPGSAKRLRIKEKA 431

Query: 241 VLTDVYSRYGKKSALVSQEGN 261
           VLTDVYSRYGKKSAL S+EGN
Sbjct: 432 VLTDVYSRYGKKSALASKEGN 451

[Close]
BLAST of CsaV3_5G025700 vs. TAIR10
Match: AT1G70200.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 118.2 bits (295), Expect = 7.4e-27
Identity = 55/94 (58.51%), Postives = 72/94 (76.60%), Query Frame = 0 

Query: 7   GVCVRIINLPRKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVDCKSEGD 66
           G  VR+ NLP+KKN+HRDL VAFK   G+++ITPAV GNKKT+DPVCKGFA VD K+E D
Sbjct: 186 GFRVRVTNLPKKKNVHRDLKVAFKEVSGVLSITPAVSGNKKTKDPVCKGFAHVDFKTEID 245

Query: 67  ALSFLQAFSGRYLTFGRVQKQIKCEIMNRQTSSS 101
           A  F++ F+G+ L FG+V KQIKC+++   +  S
Sbjct: 246 ANRFVKQFTGQSLAFGKVIKQIKCQVVEFTSDDS 279

[Close]
BLAST of CsaV3_5G025700 vs. TrEMBL
Match: tr|A0A0A0KQN3|A0A0A0KQN3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488800 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 6.2e-129
Identity = 259/260 (99.62%), Postives = 260/260 (100.00%), Query Frame = 0 

Query: 1   PEIVSTGVCVRIINLPRKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVD 60
           PEIVSTGVCVRIINLPRKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVD
Sbjct: 202 PEIVSTGVCVRIINLPRKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVD 261

Query: 61  CKSEGDALSFLQAFSGRYLTFGRVQKQIKCEIMNRQTSSSARNSSMSSTNHSRLSILEEE 120
           CKSEGDALSFLQAF+GRYLTFGRVQKQIKCEIMNRQTSSSARNSSMSSTNHSRLSILEEE
Sbjct: 262 CKSEGDALSFLQAFAGRYLTFGRVQKQIKCEIMNRQTSSSARNSSMSSTNHSRLSILEEE 321

Query: 121 AEQFVDIDXXXASXXXXXXXEDIEDDLAYVSESHSHEEDDNGVESRTEFTIQSPSEKEVN 180
           AEQFVDIDXXXASXXXXXXXEDIEDDLAYVSESHSHEEDDNGVESRTEFTIQSPSEKEVN
Sbjct: 322 AEQFVDIDXXXASXXXXXXXEDIEDDLAYVSESHSHEEDDNGVESRTEFTIQSPSEKEVN 381

Query: 181 KIELEEILPQGREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKAV 240
           KIELEEILPQGREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKAV
Sbjct: 382 KIELEEILPQGREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKAV 441

Query: 241 LTDVYSRYGKKSALVSQEGN 261
           LTDVYSRYGKKSALVSQEGN
Sbjct: 442 LTDVYSRYGKKSALVSQEGN 461

[Close]
BLAST of CsaV3_5G025700 vs. TrEMBL
Match: tr|A0A1S3CPG6|A0A1S3CPG6_CUCME (uncharacterized protein LOC103503317 OS=Cucumis melo OX=3656 GN=LOC103503317 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 8.7e-115
Identity = 228/261 (87.36%), Postives = 241/261 (92.34%), Query Frame = 0 

Query: 1   PEIVSTGVCVRIINLPRKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVD 60
           PEIVSTGV VRIINLP+KKNI+RDLVVAFKGFPGIINITPAVIGNKKTRDP+CKGFAFVD
Sbjct: 170 PEIVSTGVRVRIINLPKKKNINRDLVVAFKGFPGIINITPAVIGNKKTRDPICKGFAFVD 229

Query: 61  CKSEGDALSFLQAFSGRYLTFGRVQKQIKCEIMNRQTSSSARNSSMSSTNHSRLSILEEE 120
           CKSEGDALSFLQAFSGRYL+FGRVQKQIKCEIMNRQTSSSAR SS+ STN+SRLSILEEE
Sbjct: 230 CKSEGDALSFLQAFSGRYLSFGRVQKQIKCEIMNRQTSSSARKSSVGSTNNSRLSILEEE 289

Query: 121 AEQFVDIDXXXASXXXXXXXEDIEDDLAYVSESHSHEEDDNGVESRTEFTIQSPSEKEVN 180
           AEQF DID   AS       E+ EDDLAYV+ESHSH+ DDNGVESRTEF IQSPSEKEVN
Sbjct: 290 AEQFADIDVDLASEAARTKIEENEDDLAYVNESHSHDVDDNGVESRTEFKIQSPSEKEVN 349

Query: 181 KI-ELEEILPQGREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKA 240
           KI ELE IL QG+EEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKA
Sbjct: 350 KIDELEGILLQGKEEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKA 409

Query: 241 VLTDVYSRYGKKSALVSQEGN 261
           VLTDVYSRYGKKSAL+S+EG+
Sbjct: 410 VLTDVYSRYGKKSALLSEEGS 430

[Close]
BLAST of CsaV3_5G025700 vs. TrEMBL
Match: tr|B9SZJ2|B9SZJ2_RICCO (Uncharacterized protein (Fragment) OS=Ricinus communis OX=3988 GN=RCOM_0394460 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.7e-41
Identity = 118/267 (44.19%), Postives = 165/267 (61.80%), Query Frame = 0 

Query: 2   EIVSTGVCVRIINLPRKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVDC 61
           E++ +G+ VRIINLP+K+NIHRDL +AFK  PG++NI PAV GNKKT+DPVCKGFAFVD 
Sbjct: 198 EVIPSGIRVRIINLPKKRNIHRDLQLAFKEVPGVVNIFPAVSGNKKTKDPVCKGFAFVDF 257

Query: 62  KSEGDALSFLQAFSGRYLTFGRVQKQIKCEIMNRQTSSSARNSSMSS-TNHSRLSI--LE 121
           KSE DA  F+Q FSG+ + FGR+QKQIKC + N  +S+S+ + S SS  + S L++  LE
Sbjct: 258 KSEEDADRFVQQFSGQSIVFGRIQKQIKCMMTNGHSSNSSDDESASSFYSDSNLTVPALE 317

Query: 122 EEAEQFVDIDXXXASXXXXXXXEDIED-------DLAYVSESHSHEEDDNG--VESRTEF 181
            + +   D+D   +        +D+++       D+    ES S  + D G  V++  + 
Sbjct: 318 ADIDANADMDDSCSEETSSDVPDDMDELRTEKLKDVTDSLESFSISDSDTGDIVQAIVKP 377

Query: 182 TIQSPSEKEVNKIELEEILPQGREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGS 241
           T  + S+K+ +K                     +R TK  KK +PK   EK    EIPGS
Sbjct: 378 TTGAFSQKKQDK---------------------RRATK--KKVRPKATAEKAPKLEIPGS 437

Query: 242 AKRLRIKEKAVLTDVYSRYGKKSALVS 257
           AKRL+I+EKAVLTDV+S+YG +SA+ S
Sbjct: 438 AKRLKIREKAVLTDVFSKYGSQSAIAS 441

[Close]
BLAST of CsaV3_5G025700 vs. TrEMBL
Match: tr|G7K2V9|G7K2V9_MEDTR (RNA recognition motif OS=Medicago truncatula OX=3880 GN=11412841 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.6e-39
Identity = 109/252 (43.25%), Postives = 156/252 (61.90%), Query Frame = 0 

Query: 10  VRIINLPRKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVDCKSEGDALS 69
           VR++NLP+K+ I RDL  AF+G PGI NI PAVIGNKKTRDPVCKGFAFVD K E DA+ 
Sbjct: 180 VRLVNLPKKRKIDRDLKSAFQGIPGITNIVPAVIGNKKTRDPVCKGFAFVDFKHEDDAIR 239

Query: 70  FLQAFSGRYLTFGRVQKQIKCEIMNRQTSSSARNSSMSSTNHSRLSILEEEAEQFVDIDX 129
           F++ ++G+ +TFG++QK IKCE++N Q+SS    +   +T    L   EE++ +  +ID 
Sbjct: 240 FVELYTGQTITFGKIQKPIKCELVNAQSSSPPGLNQNINTALPLLPSFEEDSNEDSNIDD 299

Query: 130 XXASXXXXXXXEDIEDDLAYVSESHSHEEDDNGVESRTEFTIQS-PSEKEVNKIELEEIL 189
              +       +D  D+L         E D    E  T  T+ S  S +  N  E+E +L
Sbjct: 300 SAFNTWDETEVDD-SDEL--------QESDGESQEFATVLTVDSDDSVQMTNGSEIESLL 359

Query: 190 PQ--GREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRIKEKAVLTDVYS 249
            +   R+    + S +  K + + KK+  +K   K + ++PGSAKRL+IKEKAVL+DV+S
Sbjct: 360 SKQVDRKPSADKKSAVNVKQENAPKKKSNQKENTKKVLDVPGSAKRLKIKEKAVLSDVFS 419

Query: 250 RYGKKSALVSQE 259
           +YG K+AL S+E
Sbjct: 420 KYGSKAALASKE 422

[Close]
BLAST of CsaV3_5G025700 vs. TrEMBL
Match: tr|A0A1U8A0W8|A0A1U8A0W8_NELNU (uncharacterized protein LOC104595608 OS=Nelumbo nucifera OX=4432 GN=LOC104595608 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.3e-37
Identity = 111/263 (42.21%), Postives = 149/263 (56.65%), Query Frame = 0 

Query: 1   PEIVSTGVCVRIINLPRKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVD 60
           PE++S+GV VRI NLP+KKNIHRDL VAFK FPGIINI+PAV GNKKTRDPVCKGFAF+D
Sbjct: 174 PEVISSGVQVRIGNLPKKKNIHRDLKVAFKEFPGIINISPAVSGNKKTRDPVCKGFAFID 233

Query: 61  CKSEGDALSFLQAFSGRYLTFGRVQKQIKCEIMNRQTSSSAR-----NSSMSSTNHSRLS 120
             +E  A+ F++ +S + L FG+++KQI CEI N + SS A        +   T+     
Sbjct: 234 FDTEEAAIRFVKIYSRQSLLFGKIEKQITCEITNPRHSSYAHFEQSIEENYMPTSEQTYP 293

Query: 121 ILEEEAEQFVDIDXXXASXXXXXXXEDIEDDLAYVSESHSHEEDDNGVESRTEFTIQSPS 180
            ++E+ +   DI    +         D+ED +     S   EE    VE      +  PS
Sbjct: 294 SIKEDLDSDSDIITVNSWEDPSGEYNDLEDQII----SADWEETGENVEFA---NMCEPS 353

Query: 181 EKEVNKIELEEILPQGREEIHREVSPIKRKTKVSKKKQPKEKGEKKLLTEIPGSAKRLRI 240
           E E  +      L   + +        K+  KV KK+  K    K     +PGSAKRL++
Sbjct: 354 EDESMRPGSTTNLLSSKRQ--------KKAQKVHKKQSVKRNSAKPPKLNVPGSAKRLKV 413

Query: 241 KEKAVLTDVYSRYGKKSALVSQE 259
           +EKAVLT V+S+YG   +L SQE
Sbjct: 414 REKAVLTGVFSKYGGNPSLTSQE 421

The following BLAST results are available for this feature:
BLAST of CsaV3_5G025700 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51204.19.4e-12999.62hypothetical protein Csa_5G488800 [Cucumis sativus][more]
XP_008465688.11.3e-11487.36PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo] >XP_008465689.1 P... [more]
XP_023547227.11.7e-10177.39uncharacterized protein LOC111806104 [Cucurbita pepo subsp. pepo] >XP_023547228.... [more]
XP_022946475.15.4e-10077.01uncharacterized protein LOC111450524 [Cucurbita moschata] >XP_022946476.1 unchar... [more]
XP_022999318.11.2e-9976.63uncharacterized protein LOC111493728 [Cucurbita maxima] >XP_022999319.1 uncharac... [more]
BLAST of CsaV3_5G025700 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G70200.17.4e-2758.51RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CsaV3_5G025700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G025700 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KQN3|A0A0A0KQN3_CUCSA6.2e-12999.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488800 PE=4 SV=1[more]
tr|A0A1S3CPG6|A0A1S3CPG6_CUCME8.7e-11587.36uncharacterized protein LOC103503317 OS=Cucumis melo OX=3656 GN=LOC103503317 PE=... [more]
tr|B9SZJ2|B9SZJ2_RICCO1.7e-4144.19Uncharacterized protein (Fragment) OS=Ricinus communis OX=3988 GN=RCOM_0394460 P... [more]
tr|G7K2V9|G7K2V9_MEDTR1.6e-3943.25RNA recognition motif OS=Medicago truncatula OX=3880 GN=11412841 PE=4 SV=1[more]
tr|A0A1U8A0W8|A0A1U8A0W8_NELNU3.3e-3742.21uncharacterized protein LOC104595608 OS=Nelumbo nucifera OX=4432 GN=LOC104595608... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006446 regulation of translational initiation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005840 ribosome
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003743 translation initiation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G025700.1CsaV3_5G025700.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 4..111
e-value: 5.3E-5
score: 25.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 195..222
NoneNo IPR availablePANTHERPTHR37200FAMILY NOT NAMEDcoord: 2..258
NoneNo IPR availableCDDcd00590RRM_SFcoord: 10..79
e-value: 4.83941E-5
score: 39.2105
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 7..100

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G025700Cucsa.275440Cucumber (Gy14) v1cgycucB422
CsaV3_5G025700Bhi06G000654Wax gourdcucwgoB484
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G025700Cucumber (Gy14) v2cgybcucB232
CsaV3_5G025700Cucurbita maxima (Rimu)cmacucB0892
CsaV3_5G025700Cucurbita maxima (Rimu)cmacucB0947
CsaV3_5G025700Cucurbita moschata (Rifu)cmocucB0205
CsaV3_5G025700Cucurbita moschata (Rifu)cmocucB0935
CsaV3_5G025700Cucurbita pepo (Zucchini)cpecucB0129
CsaV3_5G025700Cucurbita pepo (Zucchini)cpecucB0550
CsaV3_5G025700Cucurbita pepo (Zucchini)cpecucB1028
CsaV3_5G025700Wild cucumber (PI 183967)cpicucB284
CsaV3_5G025700Bottle gourd (USVL1VR-Ls)cuclsiB370
CsaV3_5G025700Melon (DHL92) v3.5.1cucmeB359
CsaV3_5G025700Melon (DHL92) v3.6.1cucmedB351
CsaV3_5G025700Watermelon (Charleston Gray)cucwcgB362
CsaV3_5G025700Watermelon (97103) v1cucwmB387
CsaV3_5G025700Watermelon (97103) v2cucwmbB424
CsaV3_5G025700Wax gourdcucwgoB475
CsaV3_5G025700Silver-seed gourdcarcucB1110