CsaV3_5G025670 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G025670
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 20802339 .. 20806107 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCTGCCACTGTGAGTTTGTCTACTGCCTCTTTTTCTGCTTCTTTGTCGAAATTTCACAATACCATTATTTACTGGTCTTCTAATTAGGCCTTCCACATAGAAAGTTAACGACTTAGCTTTTACTTGTATGCCTAAGGTGATCACTAATGGAGTCAAGTTAGGGCCCTATGAACTCTAAGCTAAATTATGATCCACGAAGTCAGGACCCTTATATTTGGGACCATAGCTATTAGCTACCTGAAATCAGGCCAAAGTCTTATAACATGAAACTTAAAAGACCAAGGACTATAGCGGTTTCCATCCATTCAAAGGAATCTACTTAACATCCCAAGGGAATATTCTTCAATAGAGAATTTTTAAATCTTTTGTTGTGAGAAAAACACTAAATCATTTCCACTCTCCCCCTTCTGCAGCTAGTTGGAATATGTCAATCGTCAATTATCCCCTTCTGAGTTGAAGGCAAGTTTTGCATTTCTTTCCTTTTAGACTTCATGATTTCAATGTTGTTATCACGCATCTCCTTGTTCAGTATGTCTTCATTTTAGACAAGAGTAAATTCATTAGTGTTAAATTGCATTTGAATTGATCGATACTCAGGCTTATAAAAATGATTCCACTTCTAATCTTTTCACTTTTAGATGTTGGATCAAAACCCATATGTTTTCCTGAGTTGGGATGGTCTTCTAAAAATGGGCGACCAAATCTACAAGCAAGCCACTGTTGGTATGCTTCCACTTCATTTATCATTATTATTAGTATTGTTATTGTTGTTTTTAGTAAAATTGCTGACATGAGATTAGTTTAACGTAGGTTGACATACATTTTTCTGTAATCACAATCCTTAACATAGTGAATAAATTAAATGTTTTCTTTTGTCAGTCTAGTTGATATATTAGTTATATCAAAAGATTTGAACTATGGATCGGGCTATGTTCAAATGAGCACATGCTGCAAGGTATTGACATTGCAAAATGACGGCTGGTTTTCTTCCGATTGATGATATATACTGTTGATTTTCATATCATGAAATGAAAATATTTGCAAATGTGTCATTTAATGGTTGTCTGTTCAGTTTTATTTGACTGCATGTATGAATTTCTCCACTAAATTTAACTTTTGGTTTCATGCTTAATGCTCTAATGCTCTAAATTTTTGTTAATCTGTTCTTCACACTCATTTTAATATGATGTTCTTTTGAATCCGTCTTGGGTTTGCTTTTGCCCTTAGATATGTTTTCCAGCATTATCTTGTTCATCACTCGTTGTTTTGTTTACTTAATTATGTTTTTGTTTGTTTGGAATGTCTGGAACTTGTATTGTTTCTCTCTTTTTTTATTGATGGGTTATTGTTATGAGTTTTGGGTGTTCTTTTGTTTATTTTCAAGTGAGGTTTTGCTTTTGTGTGAATATATGTTTTTTGCGTTAACGTAATGTTTGGTTTGTTAGCTCTGAGAAGCTACATTGTTGTTATGTTGTGTGTTATTTATTTTACGGATAGAATATTGATAGATGAAAACTAAATGAGGGAATTAAAGAGTTGCGCTAAGGACGACTGAGTTTTCATACAACAGATTAAGTTCATATTTCTTGGGAAATTACCAAAAATAGGCTAAAAGAGGGATAAAAGATTTTTGGGATTGATTTTGAAAATGTTGATCTTTAGGACAAATTGAGAATGAATTGTCTAAATTGCTCTTTTTAATTTTTCCTTTATCTTTCCTTTCATTTCCTCTCTCATTTTCTTCTTTTATCTCTTCCTTCCCTTCCATGGCACCTTTATTTTCTCCATCCATCAACACATTCTTCTTCTCACAAACGTAAAGACAATTCTTTCATTTTCATCCTTCTCTATTATGTCTCTATCTCTTTTTCCTCCCCTTATAAAGTTGATTTTGAAACTATTAGTGAAAGTTTGAAATGTGCGAGATGTGTGCGAAATAAAACATCCGACCTAATAAACTTACTAAATATGTATAAAATCACTCTAAATGACTTAGGAGGGGTAGCAATTTGATTGTGAAACTCATAGTGAAAGTTTGAAACGTGCGAGATAGGTGAGAGATGGTTGCGAGATGCGTGCAGAATAAGACATCCAACCTAATAAACTTGCTAAACATGCACAAAATCACTCTAAATGACTTATGAGGGGTAGCAATTTGATTGTGAAACTCATAGTGAAAGTTTGAAACGTGCGACCGAGATGGTTGCGAGATGCGTGTAAAATAAAAATATCCAACCTAATAAACTTACTAAACATGCACAAACTCACTCTAAATGACTTAGGAGGGATAGTAATTTGATTGTGAAACTCGTAGTGAAAGTTTGAAACGTGCAAGATAGGTGCTAGATGCTGCGAGATGGTTGCAAGATGCGTGCGAGATAAAATTGAAGGGCCTAATAAATTTAATAAACACGCAAAAAATTAATTGAGCTAGTATATACCAAGCTTAAAGTACTTCAAATTGGGATAATTTGAAAACTACACTTATAATATTTGCCAAAACTTGACAAAATGAATAGATAAAATTATTTAAAAATGATAAAGCTTCAACCAATTGAGCAATCCCATGTGAGCATTTGATAGAGGGGTCCTCTTTGTCACCCATTTCGTAATCTTTGGTGCTAATCTCCTCTTCATTAGCATTATAAGTCCAAACCAAATATCAACAAATTCTCATTCAAGCTTTGAAGCTTCATTTTTACATCAATTTCTGAGAGACAACCATTTAAACTCTCTTTTTTTATCACTTAAATCAAATACAAAAATGGGAATTCATCTGCCTTCGCTTCTCCTCAATGCCAAGCAAATATTCAGAACGCAATCTATTTCAACAAGATGTCATTCCAAGTAGAATACTATTGTATGTTGATTTTCTGTATAAATATTAAAAGCAATACAAACAAACAACAAAATCATACAAAGTCAGGCTCCATGATGATTGTGTTCTTTCTTTTCTGTACCCATGTCTAAACTAACCTCCGATTGAGTTGTCACATTTTCACCCAATCTCTTCTCGCACATTGCACCATAACCCTAATGAAAAACTACAGAATACCGGTCCAAATGCAACCCAAAATGAAAATTTTCCCTAACCATTTGCCACACCCACAATCCCAATCTTCTTCAAACACGATGAAAAGAAAGGAAAATTGAGGAAGTACTAACCGAAATCACTGGAAATGAGGAAAATAAATCACCTAAACAGAGAAGAAATCATCCGACGATCGTCGAAAAACTGAAACCTAAACAAATTAAGAACGGAAAATTTGATTCTAAAACCTAAACAAATTAAGAACGGAAAATTTGATTCTAAAGCCTAAACAAATTAAGAACGAAAAATGTTATAAAATGTGACTTTTGTTGTAGTGACGGGGGTTTGAACAATTAGCGGCAGTGAAGAAAACGGCGATGGTGACGACGACTGAGAAAAGAGAAGAGTTGAAGTCGGCTACGTTTTGAAAAGGAGAATAATAGCAAAAAGTTGATTTTAAGGATTTTTTTAATTGAAGGGCAATATAAACTTTTCATAGCTTATTTGTCCTAAATCCCATCTTTTTAAAAAACTTCTCAAAACTCTTTACACCCTTACAAATAATCCCAAATTTGGTATTAGTAGTTGTGTCCTTATCTGTATTTTAGGTCCTTGACCTTCTCCCATTATGACCACTGACCATTGTTTTTCGCATTATGTGACAATCTTGACATTCACATTTGTTTTTTGGTACAGGGCATATGTGATTCTTAATTGTGAAATATGGATTTAG

mRNA sequence

ATGCCTCTGCCACTACTTCATGATTTCAATGTTGTTATCACGCATCTCCTTGTTCAGTATGTCTTCATTTTAGACAAGAATGTTGGATCAAAACCCATATGTTTTCCTGAGTTGGGATGGTCTTCTAAAAATGGGCGACCAAATCTACAAGCAAGCCACTGTTGGGCATATGTGATTCTTAATTGTGAAATATGGATTTAG

Coding sequence (CDS)

ATGCCTCTGCCACTACTTCATGATTTCAATGTTGTTATCACGCATCTCCTTGTTCAGTATGTCTTCATTTTAGACAAGAATGTTGGATCAAAACCCATATGTTTTCCTGAGTTGGGATGGTCTTCTAAAAATGGGCGACCAAATCTACAAGCAAGCCACTGTTGGGCATATGTGATTCTTAATTGTGAAATATGGATTTAG

Protein sequence

MPLPLLHDFNVVITHLLVQYVFILDKNVGSKPICFPELGWSSKNGRPNLQASHCWAYVILNCEIWI
Homology
[Close]
BLAST of CsaV3_5G025670 vs. NCBI nr
Match: KGN51201.1 (hypothetical protein Csa_5G488770 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-32
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MPLPLLHDFNVVITHLLVQYVFILDKNVGSKPICFPELGWSSKNGRPNLQASHCWAYVIL 60
          MPLPLLHDFNVVITHLLVQYVFILDKNVGSKPICFPELGWSSKNGRPNLQASHCWAYVIL
Sbjct: 1  MPLPLLHDFNVVITHLLVQYVFILDKNVGSKPICFPELGWSSKNGRPNLQASHCWAYVIL 60

Query: 61 NCEIWI 67
          NCEIWI
Sbjct: 61 NCEIWI 66

[Close]
BLAST of CsaV3_5G025670 vs. TrEMBL
Match: tr|A0A0A0KTZ6|A0A0A0KTZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488770 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.1e-33
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MPLPLLHDFNVVITHLLVQYVFILDKNVGSKPICFPELGWSSKNGRPNLQASHCWAYVIL 60
          MPLPLLHDFNVVITHLLVQYVFILDKNVGSKPICFPELGWSSKNGRPNLQASHCWAYVIL
Sbjct: 1  MPLPLLHDFNVVITHLLVQYVFILDKNVGSKPICFPELGWSSKNGRPNLQASHCWAYVIL 60

Query: 61 NCEIWI 67
          NCEIWI
Sbjct: 61 NCEIWI 66

The following BLAST results are available for this feature:
BLAST of CsaV3_5G025670 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51201.11.2e-32100.00hypothetical protein Csa_5G488770 [Cucumis sativus][more]
BLAST of CsaV3_5G025670 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G025670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G025670 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KTZ6|A0A0A0KTZ6_CUCSA8.1e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488770 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G025670.1CsaV3_5G025670.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G025670Silver-seed gourdcarcucB1110
CsaV3_5G025670Cucumber (Gy14) v2cgybcucB232
CsaV3_5G025670Cucumber (Gy14) v1cgycucB422
CsaV3_5G025670Cucurbita maxima (Rimu)cmacucB0892
CsaV3_5G025670Cucurbita maxima (Rimu)cmacucB0947
CsaV3_5G025670Cucurbita moschata (Rifu)cmocucB0205
CsaV3_5G025670Cucurbita moschata (Rifu)cmocucB0935
CsaV3_5G025670Cucurbita pepo (Zucchini)cpecucB0129
CsaV3_5G025670Cucurbita pepo (Zucchini)cpecucB0550
CsaV3_5G025670Cucurbita pepo (Zucchini)cpecucB1028
CsaV3_5G025670Wild cucumber (PI 183967)cpicucB284
CsaV3_5G025670Bottle gourd (USVL1VR-Ls)cuclsiB370
CsaV3_5G025670Melon (DHL92) v3.5.1cucmeB359
CsaV3_5G025670Melon (DHL92) v3.6.1cucmedB351
CsaV3_5G025670Watermelon (Charleston Gray)cucwcgB362
CsaV3_5G025670Watermelon (97103) v1cucwmB387
CsaV3_5G025670Watermelon (97103) v2cucwmbB424
CsaV3_5G025670Wax gourdcucwgoB484