CsaV3_5G025570 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G025570
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 20686784 .. 20687153 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATAATAACACTTTATTAATAACGGTCAACATAATATATTTACTATCTACAGGTTTTAGGACATAAAACCCACCAATACCAATATCCTAACAATTTATATAAAATCATCATTACAAGGCTATTAGGTATTGCCGATGCAACAAAACGTCAGAAAAATGGAAAAAGGTCGAGCGAAGTTTTCCCCACATCAAAATCTCCGTCTACTAGAAAGAACGTCGGCTACAAGACGTCAACAAAACTTTCGCCGACGCTCTAAAGGGAGGATGTTAGGCTGGTTCTATCTTCAACGCCATGTAGACGATGTCGACAATGGGGTAAGTCCGACGTCACCTCCTTACGTAGAACAAAGATGTCCTGACATGATATGA

mRNA sequence

ATGCAACAAAACGTCAGAAAAATGGAAAAAGGTCGAGCGAAGTTTTCCCCACATCAAAATCTCCGTCTACTAGAAAGAACGTCGGCTACAAGACGTCAACAAAACTTTCGCCGACGCTCTAAAGGGAGGATGTTAGGCTGGTTCTATCTTCAACGCCATGTAGACGATGTCGACAATGGGGTAAGTCCGACGTCACCTCCTTACGTAGAACAAAGATGTCCTGACATGATATGA

Coding sequence (CDS)

ATGCAACAAAACGTCAGAAAAATGGAAAAAGGTCGAGCGAAGTTTTCCCCACATCAAAATCTCCGTCTACTAGAAAGAACGTCGGCTACAAGACGTCAACAAAACTTTCGCCGACGCTCTAAAGGGAGGATGTTAGGCTGGTTCTATCTTCAACGCCATGTAGACGATGTCGACAATGGGGTAAGTCCGACGTCACCTCCTTACGTAGAACAAAGATGTCCTGACATGATATGA

Protein sequence

MQQNVRKMEKGRAKFSPHQNLRLLERTSATRRQQNFRRRSKGRMLGWFYLQRHVDDVDNGVSPTSPPYVEQRCPDMI
Homology
[Close]
BLAST of CsaV3_5G025570 vs. NCBI nr
Match: KGN51191.1 (hypothetical protein Csa_5G487190 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 1.4e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 8  MEKGRAKFSPHQNLRLLERTSATRRQQNFRRRSKGRMLGWFYLQRHVDDVDNGVSPTSPP 67
          MEKGRAKFSPHQNLRLLERTSATRRQQNFRRRSKGRMLGWFYLQRHVDDVDNGVSPTSPP
Sbjct: 1  MEKGRAKFSPHQNLRLLERTSATRRQQNFRRRSKGRMLGWFYLQRHVDDVDNGVSPTSPP 60

Query: 68 YVEQRCPDMI 78
          YVEQRCPDMI
Sbjct: 61 YVEQRCPDMI 70

[Close]
BLAST of CsaV3_5G025570 vs. TrEMBL
Match: tr|A0A0A0KTY8|A0A0A0KTY8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G487190 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.5e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 8  MEKGRAKFSPHQNLRLLERTSATRRQQNFRRRSKGRMLGWFYLQRHVDDVDNGVSPTSPP 67
          MEKGRAKFSPHQNLRLLERTSATRRQQNFRRRSKGRMLGWFYLQRHVDDVDNGVSPTSPP
Sbjct: 1  MEKGRAKFSPHQNLRLLERTSATRRQQNFRRRSKGRMLGWFYLQRHVDDVDNGVSPTSPP 60

Query: 68 YVEQRCPDMI 78
          YVEQRCPDMI
Sbjct: 61 YVEQRCPDMI 70

The following BLAST results are available for this feature:
BLAST of CsaV3_5G025570 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51191.11.4e-32100.00hypothetical protein Csa_5G487190 [Cucumis sativus][more]
BLAST of CsaV3_5G025570 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G025570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G025570 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KTY8|A0A0A0KTY8_CUCSA9.5e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G487190 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G025570.1CsaV3_5G025570.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G025570CsGy5G016350Cucumber (Gy14) v2cgybcucB232
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G025570Silver-seed gourdcarcucB1110
CsaV3_5G025570Cucumber (Gy14) v1cgycucB422
CsaV3_5G025570Cucurbita maxima (Rimu)cmacucB0892
CsaV3_5G025570Cucurbita maxima (Rimu)cmacucB0947
CsaV3_5G025570Cucurbita moschata (Rifu)cmocucB0205
CsaV3_5G025570Cucurbita moschata (Rifu)cmocucB0935
CsaV3_5G025570Cucurbita pepo (Zucchini)cpecucB0129
CsaV3_5G025570Cucurbita pepo (Zucchini)cpecucB0550
CsaV3_5G025570Cucurbita pepo (Zucchini)cpecucB1028
CsaV3_5G025570Wild cucumber (PI 183967)cpicucB284
CsaV3_5G025570Bottle gourd (USVL1VR-Ls)cuclsiB370
CsaV3_5G025570Melon (DHL92) v3.5.1cucmeB359
CsaV3_5G025570Melon (DHL92) v3.6.1cucmedB351
CsaV3_5G025570Wax gourdcucwgoB484