CsaV3_5G025020 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G025020
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Transcription termination factor family protein
Location	chr5 : 20031519 .. 20034740 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACAACCCTCAGCCCAATTTAAAAATAGAAAACTAAAATTAGTTGGAAAATCCTAAAACTTCTCCCTCTCCCTCTCCCTCTCCCTCTCGCCTACTCACGCCTCACGTCTCCCTCTCCAGTCACTCCTCCTCTCGACGCCGGCCGCCGCAACAATTACTCACACTACGCCTCCCTCTCAGTCATTTCTCCTCTCGACGCCGGCTGCTGCAACATTTTAGTTTTCAATTTGTCAGTCACAACCACGACTTCGGATCTCACTTCTCTTTGACGCAATTTCTTGAGGTGAACTTTATGCTTTTTACGGTTCATATGTAGTTGCTGCTTTTAGTTGGTGAAAGAAGGAAAACAAGATAAATGGATTTTTAGTAGTTTTCTAACTTATGCACCAAAATAATTTGGAACCGAATCGTACATAAAAGTAATGAAAAAACAAATATGAGGATAGAATCGAGTTGCACGTTTAGTTTGTGGAAGGACATAGCCACAGCTTTTTTCCCCCTTCTTTTTCTCCTGGGAGAACGGTAGTTTAGAAGTGTGAAGAGGGGAGAAGGTGCTTTTTTGGCGTGATAAGTGGATTGCTGATTGATCCCTCAAACACATAATTTCGGATGCGTTTAAAATTTTGATTGTCAAAGACAGTATAAGAGTTATGGAAAGACAGAGTATAATTTGGAGCCTTGTATACCTCACAAAGGGATAATAATTTGGAAGCTGGATAAGTCTAGCTTGTTTTCAGTTAAGTCTGCTTTGGTTGCTATCTTAGAGAAGATGGGTGCTTGAAGATATGTTCTTTCGCATCTGGGATGGTGCCATTCAAAAGAGTAAAATTTTTCCGGTCGACCATTGCCTTAAAATTAACTCTATGGTTCAAGGGAGATTTTTCCGGTCCCCCCCCCCCCCCCCCAAATATTTGTATCGTGTGTTGTAAAAGTGAGGAGTCTCTCACTATTGCTAGTACACTGTTAGTTTGCTGAAAGGGGGTGTGAAGTTCTCCGGAACACTGGAAATTTTTTTTCACTTTTTATTTATTTTTACCCTGTCTGTAGTTACAAACTTACAAGAAAATAATCTCATAAAGAAACTTACAAGAAAATAAGAGTTGAAATTAATTACAAGAAAATAAAAATGATTAATTGTAAAATAAAAATCTCCTGATTGTTTTTGTTAACCATTCAAATTAATTGAGAGTGGATATGAACTATAAAAGAAATGCACTGGAAGGCAACTTAAATCGGTTTTCTAGTGAATATTAGATTAATGGCATACACATATCTTGTAATAGGCTAGAGCAAAGTCATCTTGTACAATATTCCTAAAAATATATCGTGTTCTTTGAGATGCTTTATGAAAAAAATTATAACATGTATGCAACTTTTGTCAGGTGAACAATTAGTGTAAAGCTTCAAGGGGCAATGATCAGAGGCCATGCCGGTGTTGCGAAACCTAATTTTTCCTTAATGTTGTTTGAGATGTCTACTCTTGAATGTCACAACTTCAAATTCACTGCCACACGAACATTTCAAATGCCTTATAATCATGAGAAAAGGAAGGGTTTGATTACACAGCTACAATATTCTCATGGTGATAGGAGAACAGTCTTCAAATCTCTGCATTCAACTATTTCATCAAAGTCTTACAGCTCTAAAGTGGATAGAAAAGAAGGTAGTATTGGTTCATCATTATATAGTCGCCCTAGTTTAGTCGAGATGAAGAATGTGAGGCTTGAAAACCGTTCAAAGGTTTATGAGTTCTTGCGTGGAATTGGTGTTGTTCCTGATGAACTTGATGGACTGGAGCTTCCTGTAACAGTTGATGTTATGAAGGAACGTGTCGATTTTCTTCTCAAATTGGGACTTACAATTGAAGATATAAATAACTACCCTCTTATCCTTGGCTGCAGTGTTAAGAAAAATATGATACCGGTACTTGATTACCTTGGTAAATTAGGCGTTAGGAAATCTACTTTCACTGAGTTCTTAAAAAGGTATCCGCAAGTACTCCATTCCAGCGTTGTTGTCGACCTTGCTCCAGTTATCAAGTATCTTCAAGGCATGGATATTAAGCCAAATGATATCCCTCGTGTTCTCGAGAGATATCCAGAAGTATTGGGGTTTAAGCTTGAGGGAACCATGAGTACTTCGGTGGCGTATTTGGTAGGCATTGGAGTTACAAGAAGAGAAATTGGAGGGGTTTTAACCAAATACCCTGAGATTTTGGGAATGCGGGTTGCTCGAGTAATCAAGCCTTTTGTCGAGTATCTTGAAGGTTTGGGCATTCCAAGGTTAGCAGTGGCTAGGTTAATAGAGAAACGACCACACATTCTGGGGTTTGGATTGGAAAAAAAAGTCAAGCCCAATATTCAATTGCTATTGGAGTTCAAAGTAAGAGAAGCGTACCTTCCTTCTATAGTAGCACAATATGCTGAGATAATAGGAATAGACCTAGAAGCTAATCTTCAAACTCAGAGAAATTTGCTAAAGTCATTAATTGAATTGGACAATGATAACTTCGGCACTATCATCGAAAAGATGCCACAAGTCGTTAGCCTCAGCCGTTCAGCTGTGATAAACCATGTAGATTTCCTAAAAACTTGTGGTTTTTCCTTGCTTCAAGTAAAGAACATGGTTATAGGATGTCCCCAATTGCTTGCTTTGAATATTGACATAATGAAACACAGCTTTGAGTTCTTCCAAATGGAAATGGGAAGGCCTTTAGAAGACTTAGCCACTTTTCCTGCATTCTTTACTTATGGTTTAGAATCCACAATAAAGCCCAGACATAGGAAAGTTGTACAGAAGGGAATTAGTTGTTCACTTTCATGGCTTCTCAATTGTGCTGATGAAAAGTTTATGGAAAGGATGAGTTATGATACCATAGATATGGAGGAGATGGAAACTACGCCAACATTCGATATGAATTCTCTTATACAACCTCGAAATGATGAATCGGATTCTGAGTATGAAGAGGATAGTGAGGAGGAGTCTTGACAGGCTATTTTGTGTTGGTTTCCTTGGCTCTAGGGTAGTGGCTGTCATCATTAGAGCATGTAACACCTTGTGAAAGGCAGTAACTTCTGTTTTGTTCAACCATATTAAATTTGTGTATAGTTTCTTGTCTCTTTTACTTTTCACTTTTGCTTCATGCATCCCTCTCTATAACAATACTTTTGTATGCTAATTAAAATATCTATAAAATTCAGTTTTTTAGAAATTTAAACGTAG

mRNA sequence

ATGATCAGAGGCCATGCCGGTGTTGCGAAACCTAATTTTTCCTTAATGTTGTTTGAGATGTCTACTCTTGAATGTCACAACTTCAAATTCACTGCCACACGAACATTTCAAATGCCTTATAATCATGAGAAAAGGAAGGGTTTGATTACACAGCTACAATATTCTCATGGTGATAGGAGAACAGTCTTCAAATCTCTGCATTCAACTATTTCATCAAAGTCTTACAGCTCTAAAGTGGATAGAAAAGAAGGTAGTATTGGTTCATCATTATATAGTCGCCCTAGTTTAGTCGAGATGAAGAATGTGAGGCTTGAAAACCGTTCAAAGGTTTATGAGTTCTTGCGTGGAATTGGTGTTGTTCCTGATGAACTTGATGGACTGGAGCTTCCTGTAACAGTTGATGTTATGAAGGAACGTGTCGATTTTCTTCTCAAATTGGGACTTACAATTGAAGATATAAATAACTACCCTCTTATCCTTGGCTGCAGTGTTAAGAAAAATATGATACCGGTACTTGATTACCTTGGTAAATTAGGCGTTAGGAAATCTACTTTCACTGAGTTCTTAAAAAGGTATCCGCAAGTACTCCATTCCAGCGTTGTTGTCGACCTTGCTCCAGTTATCAAGTATCTTCAAGGCATGGATATTAAGCCAAATGATATCCCTCGTGTTCTCGAGAGATATCCAGAAGTATTGGGGTTTAAGCTTGAGGGAACCATGAGTACTTCGGTGGCGTATTTGGTAGGCATTGGAGTTACAAGAAGAGAAATTGGAGGGGTTTTAACCAAATACCCTGAGATTTTGGGAATGCGGGTTGCTCGAGTAATCAAGCCTTTTGTCGAGTATCTTGAAGGTTTGGGCATTCCAAGGTTAGCAGTGGCTAGGTTAATAGAGAAACGACCACACATTCTGGGGTTTGGATTGGAAAAAAAAGTCAAGCCCAATATTCAATTGCTATTGGAGTTCAAAGTAAGAGAAGCGTACCTTCCTTCTATAGTAGCACAATATGCTGAGATAATAGGAATAGACCTAGAAGCTAATCTTCAAACTCAGAGAAATTTGCTAAAGTCATTAATTGAATTGGACAATGATAACTTCGGCACTATCATCGAAAAGATGCCACAAGTCGTTAGCCTCAGCCGTTCAGCTGTGATAAACCATGTAGATTTCCTAAAAACTTGTGGTTTTTCCTTGCTTCAAGTAAAGAACATGGTTATAGGATGTCCCCAATTGCTTGCTTTGAATATTGACATAATGAAACACAGCTTTGAGTTCTTCCAAATGGAAATGGGAAGGCCTTTAGAAGACTTAGCCACTTTTCCTGCATTCTTTACTTATGGTTTAGAATCCACAATAAAGCCCAGACATAGGAAAGTTGTACAGAAGGGAATTAGTTGTTCACTTTCATGGCTTCTCAATTGTGCTGATGAAAAGTTTATGGAAAGGATGAGTTATGATACCATAGATATGGAGGAGATGGAAACTACGCCAACATTCGATATGAATTCTCTTATACAACCTCGAAATGATGAATCGGATTCTGAGTATGAAGAGGATAGTGAGGAGGAGTCTTGA

Coding sequence (CDS)

ATGATCAGAGGCCATGCCGGTGTTGCGAAACCTAATTTTTCCTTAATGTTGTTTGAGATGTCTACTCTTGAATGTCACAACTTCAAATTCACTGCCACACGAACATTTCAAATGCCTTATAATCATGAGAAAAGGAAGGGTTTGATTACACAGCTACAATATTCTCATGGTGATAGGAGAACAGTCTTCAAATCTCTGCATTCAACTATTTCATCAAAGTCTTACAGCTCTAAAGTGGATAGAAAAGAAGGTAGTATTGGTTCATCATTATATAGTCGCCCTAGTTTAGTCGAGATGAAGAATGTGAGGCTTGAAAACCGTTCAAAGGTTTATGAGTTCTTGCGTGGAATTGGTGTTGTTCCTGATGAACTTGATGGACTGGAGCTTCCTGTAACAGTTGATGTTATGAAGGAACGTGTCGATTTTCTTCTCAAATTGGGACTTACAATTGAAGATATAAATAACTACCCTCTTATCCTTGGCTGCAGTGTTAAGAAAAATATGATACCGGTACTTGATTACCTTGGTAAATTAGGCGTTAGGAAATCTACTTTCACTGAGTTCTTAAAAAGGTATCCGCAAGTACTCCATTCCAGCGTTGTTGTCGACCTTGCTCCAGTTATCAAGTATCTTCAAGGCATGGATATTAAGCCAAATGATATCCCTCGTGTTCTCGAGAGATATCCAGAAGTATTGGGGTTTAAGCTTGAGGGAACCATGAGTACTTCGGTGGCGTATTTGGTAGGCATTGGAGTTACAAGAAGAGAAATTGGAGGGGTTTTAACCAAATACCCTGAGATTTTGGGAATGCGGGTTGCTCGAGTAATCAAGCCTTTTGTCGAGTATCTTGAAGGTTTGGGCATTCCAAGGTTAGCAGTGGCTAGGTTAATAGAGAAACGACCACACATTCTGGGGTTTGGATTGGAAAAAAAAGTCAAGCCCAATATTCAATTGCTATTGGAGTTCAAAGTAAGAGAAGCGTACCTTCCTTCTATAGTAGCACAATATGCTGAGATAATAGGAATAGACCTAGAAGCTAATCTTCAAACTCAGAGAAATTTGCTAAAGTCATTAATTGAATTGGACAATGATAACTTCGGCACTATCATCGAAAAGATGCCACAAGTCGTTAGCCTCAGCCGTTCAGCTGTGATAAACCATGTAGATTTCCTAAAAACTTGTGGTTTTTCCTTGCTTCAAGTAAAGAACATGGTTATAGGATGTCCCCAATTGCTTGCTTTGAATATTGACATAATGAAACACAGCTTTGAGTTCTTCCAAATGGAAATGGGAAGGCCTTTAGAAGACTTAGCCACTTTTCCTGCATTCTTTACTTATGGTTTAGAATCCACAATAAAGCCCAGACATAGGAAAGTTGTACAGAAGGGAATTAGTTGTTCACTTTCATGGCTTCTCAATTGTGCTGATGAAAAGTTTATGGAAAGGATGAGTTATGATACCATAGATATGGAGGAGATGGAAACTACGCCAACATTCGATATGAATTCTCTTATACAACCTCGAAATGATGAATCGGATTCTGAGTATGAAGAGGATAGTGAGGAGGAGTCTTGA

Protein sequence

MIRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRRTVFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVVPDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGVRKSTFTEFLKRYPQVLHSSVVVDLAPVIKYLQGMDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVTRREIGGVLTKYPEILGMRVARVIKPFVEYLEGLGIPRLAVARLIEKRPHILGFGLEKKVKPNIQLLLEFKVREAYLPSIVAQYAEIIGIDLEANLQTQRNLLKSLIELDNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMKHSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFMERMSYDTIDMEEMETTPTFDMNSLIQPRNDESDSEYEEDSEEES

Homology

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BLAST of CsaV3_5G025020 vs. NCBI nr
Match: XP_004143818.1 (PREDICTED: uncharacterized protein LOC101216006 [Cucumis sativus] >KGN51142.1 hypothetical protein Csa_5G466880 [Cucumis sativus])

HSP 1 Score: 638.6 bits (1646), Expect = 1.8e-179
Identity = 524/524 (100.00%), Postives = 524/524 (100.00%), Query Frame = 0


Query: 1   MIRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRR 60
           MIRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRR
Sbjct: 1   MIRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRR 60

Query: 61  TVFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVV 120
           TVFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVV
Sbjct: 61  TVFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVV 120

Query: 121 PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGV 180
           PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGV
Sbjct: 121 PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGV 180

Query: 181 RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIE 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIE
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIE 360

Query: 361 LDNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMK 420
           LDNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMK
Sbjct: 361 LDNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMK 420

Query: 421 HSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFM 480
           HSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFM
Sbjct: 421 HSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFM 480

Query: 481 ERMSYDTIDMEEMETTPTFDMNSLIQPRNDESDSEYEEDSEEES 525
           ERMSYDTIDMEEMETTPTFDMNSLIQPRNDESDSEYEEDSEEES
Sbjct: 481 ERMSYDTIDMEEMETTPTFDMNSLIQPRNDESDSEYEEDSEEES 524

[Close]

BLAST of CsaV3_5G025020 vs. NCBI nr
Match: XP_008465763.1 (PREDICTED: transcription termination factor MTERF4, chloroplastic [Cucumis melo] >XP_008465764.1 PREDICTED: transcription termination factor MTERF4, chloroplastic [Cucumis melo])

HSP 1 Score: 595.1 bits (1533), Expect = 2.3e-166
Identity = 503/524 (95.99%), Postives = 509/524 (97.14%), Query Frame = 0


Query: 1   MIRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRR 60
           MIRGHAGV KPN S MLFEMSTLECHNFKFTAT TF     HEKR+ L TQLQYSHGDRR
Sbjct: 1   MIRGHAGVVKPNVSFMLFEMSTLECHNFKFTATPTFLTSCIHEKRRCLTTQLQYSHGDRR 60

Query: 61  TVFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVV 120
           TVFKSLHSTISSK YSSKV RK GS GSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVV
Sbjct: 61  TVFKSLHSTISSKPYSSKVGRKGGSSGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVV 120

Query: 121 PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGV 180
           PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPL+LGCSVKKNMIPVLDYLGKLGV
Sbjct: 121 PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGV 180

Query: 181 RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIE 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIE
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIE 360

Query: 361 LDNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMK 420
           LDNDNFGTIIEKMPQ+VSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMK
Sbjct: 361 LDNDNFGTIIEKMPQIVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMK 420

Query: 421 HSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFM 480
           HSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKF+
Sbjct: 421 HSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFV 480

Query: 481 ERMSYDTIDMEEMETTPTFDMNSLIQPRNDESDSEYEEDSEEES 525
           ERMSYDTIDMEEMETTPTFDMNSL+QPRNDESDSEYEEDSEEE+
Sbjct: 481 ERMSYDTIDMEEMETTPTFDMNSLVQPRNDESDSEYEEDSEEET 524

[Close]

BLAST of CsaV3_5G025020 vs. NCBI nr
Match: XP_023538106.1 (transcription termination factor MTERF4, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023538107.1 transcription termination factor MTERF4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 543.1 bits (1398), Expect = 1.0e-150
Identity = 473/524 (90.27%), Postives = 495/524 (94.47%), Query Frame = 0


Query: 1   MIRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRR 60
           MIRGH GV KPNFS+ML EM TL+C  FKF  T TFQ   NHEKR+GLIT+LQYS GDRR
Sbjct: 2   MIRGHTGVVKPNFSIMLLEMPTLKCQKFKFITTSTFQTSPNHEKRRGLITKLQYSRGDRR 61

Query: 61  TVFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVV 120
           TV KSLHSTI+SK YSSKV RKEGS  SSLYSRPSLVEMKNVR ENR+KVYEFLRGIG+V
Sbjct: 62  TVSKSLHSTITSKPYSSKVSRKEGS-ASSLYSRPSLVEMKNVRQENRAKVYEFLRGIGIV 121

Query: 121 PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGV 180
           PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPL+LGCSVKKNM+PVLDYLGKLGV
Sbjct: 122 PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGV 181

Query: 181 RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 182 RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 242 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIE 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKS+IE
Sbjct: 302 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSIIE 361

Query: 361 LDNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMK 420
           LDNDNFGTIIEKMPQVVSLS SAV +HVDFLK+CGFSL QVKNMVIGCPQLLALN+DIMK
Sbjct: 362 LDNDNFGTIIEKMPQVVSLSSSAVNSHVDFLKSCGFSLQQVKNMVIGCPQLLALNLDIMK 421

Query: 421 HSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFM 480
           HSF+FFQ EMGRPL+DL  FPAFFTYGLESTIKPRHRKVVQKG++CSLSWLLNC+DEKF 
Sbjct: 422 HSFQFFQKEMGRPLDDLVAFPAFFTYGLESTIKPRHRKVVQKGVTCSLSWLLNCSDEKFA 481

Query: 481 ERMSYDTIDMEEMETTPTFDMNSLIQPRNDESDSEYEEDSEEES 525
           ERM+YDTIDMEEMET PTFDM+SL QPR DESDS+YEEDSEEE+
Sbjct: 482 ERMTYDTIDMEEMETAPTFDMSSLTQPRYDESDSDYEEDSEEET 524

[Close]

BLAST of CsaV3_5G025020 vs. NCBI nr
Match: XP_022938209.1 (transcription termination factor MTERF4, chloroplastic [Cucurbita moschata] >XP_022938210.1 transcription termination factor MTERF4, chloroplastic [Cucurbita moschata] >XP_022938211.1 transcription termination factor MTERF4, chloroplastic [Cucurbita moschata])

HSP 1 Score: 539.7 bits (1389), Expect = 1.1e-149
Identity = 472/524 (90.08%), Postives = 494/524 (94.27%), Query Frame = 0


Query: 1   MIRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRR 60
           MIRGH GV KPNFS+ML EM TL+CH FKF  T TFQ   NHEKR+GLIT+LQYS GD R
Sbjct: 2   MIRGHTGVVKPNFSIMLLEMPTLKCHKFKFDTTSTFQTSPNHEKRRGLITKLQYSRGDWR 61

Query: 61  TVFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVV 120
           TV KSLHSTI+SK YSSKV RKEGS  SSLYSRPSLVEMKNVR ENR+KVYEFLRGIG+V
Sbjct: 62  TVSKSLHSTITSKPYSSKVGRKEGS-ASSLYSRPSLVEMKNVRQENRAKVYEFLRGIGIV 121

Query: 121 PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGV 180
           PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPL+LGCSVKKNM+PVLDYLGKLGV
Sbjct: 122 PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGV 181

Query: 181 RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 182 RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 242 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIE 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKS+IE
Sbjct: 302 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSIIE 361

Query: 361 LDNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMK 420
           LDNDNFGTIIEKMPQVVSLS SAV +HVD LK+CGFSL QVKNMVIGCPQLLALN+DIMK
Sbjct: 362 LDNDNFGTIIEKMPQVVSLSSSAVNSHVDCLKSCGFSLQQVKNMVIGCPQLLALNLDIMK 421

Query: 421 HSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFM 480
           HSF+FFQ EMGRPL+DL  FPAFFTYGLESTIKPRHRKVVQKG++CSLSWLLNC+DEKF 
Sbjct: 422 HSFQFFQKEMGRPLDDLVAFPAFFTYGLESTIKPRHRKVVQKGVTCSLSWLLNCSDEKFA 481

Query: 481 ERMSYDTIDMEEMETTPTFDMNSLIQPRNDESDSEYEEDSEEES 525
           ERM+YDTIDMEEMET PTFDM+SL QPR DESDS+YEEDSEEE+
Sbjct: 482 ERMTYDTIDMEEMETAPTFDMSSLTQPRYDESDSDYEEDSEEET 524

[Close]

BLAST of CsaV3_5G025020 vs. NCBI nr
Match: XP_022965673.1 (transcription termination factor MTERF4, chloroplastic [Cucurbita maxima] >XP_022965674.1 transcription termination factor MTERF4, chloroplastic [Cucurbita maxima] >XP_022965675.1 transcription termination factor MTERF4, chloroplastic [Cucurbita maxima])

HSP 1 Score: 534.3 bits (1375), Expect = 4.8e-148
Identity = 469/524 (89.50%), Postives = 491/524 (93.70%), Query Frame = 0


Query: 1   MIRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRR 60
           MIRGH GV KPNFS+ML EM TL+CH FKF  T TFQ   NHEKR  LIT+LQYS GDR+
Sbjct: 2   MIRGHTGVVKPNFSIMLLEMPTLKCHKFKFGTTSTFQASPNHEKRGSLITKLQYSRGDRK 61

Query: 61  TVFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVV 120
           TV KSLHSTI+SK YSSKV RKEGS  SSLYSRPSLVEMKNVR ENR+KVYEFLRGIG+V
Sbjct: 62  TVSKSLHSTITSKPYSSKVSRKEGS-ASSLYSRPSLVEMKNVRQENRAKVYEFLRGIGIV 121

Query: 121 PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGV 180
           PDELDGLELPVTVDVMKERVDFLLKLGL IEDINNYPL+LGCSVKKNM+PVLDYLGKLGV
Sbjct: 122 PDELDGLELPVTVDVMKERVDFLLKLGLAIEDINNYPLVLGCSVKKNMVPVLDYLGKLGV 181

Query: 181 RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 182 RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 242 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIE 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKS+IE
Sbjct: 302 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSIIE 361

Query: 361 LDNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMK 420
           LDNDNFGTIIEKMPQVVSLS SAV +HVDFLK+CGFSL QVKNMVIGCPQLLALN+DIMK
Sbjct: 362 LDNDNFGTIIEKMPQVVSLSSSAVNSHVDFLKSCGFSLQQVKNMVIGCPQLLALNLDIMK 421

Query: 421 HSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFM 480
           HSF+FFQ EMGRPL+DL  FPAFFTYGLESTIKPRHRKVV KGI+CSLSWLLNC+DEKF 
Sbjct: 422 HSFQFFQKEMGRPLDDLVAFPAFFTYGLESTIKPRHRKVVHKGITCSLSWLLNCSDEKFA 481

Query: 481 ERMSYDTIDMEEMETTPTFDMNSLIQPRNDESDSEYEEDSEEES 525
           ERM+YDTIDMEEMET P+FDM+SL QPR DESDS+YEED EEE+
Sbjct: 482 ERMTYDTIDMEEMETAPSFDMSSLTQPRYDESDSDYEEDGEEET 524

[Close]

BLAST of CsaV3_5G025020 vs. TAIR10
Match: AT4G02990.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 327.8 bits (839), Expect = 1.2e-89
Identity = 366/517 (70.79%), Postives = 414/517 (80.08%), Query Frame = 0


Query: 2   IRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKR--KGLITQLQYSHGDR 61
           IR   G  KP F L+ FE  +      +  +  T+    NH+KR   G+   +Q +  +R
Sbjct: 3   IRFCNGFTKPGFLLVHFEPPSFFAVRSRSLSDSTYGNLCNHKKRPGTGIGLTVQCAIANR 62

Query: 62  RTVFKSLHS--------TISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVY 121
           R   +SL S                            SLYSRPSL++M   +  NR+KVY
Sbjct: 63  RFSSRSLDSPRRXXXXXXXXXXXXXXXXXXXXXXXXKSLYSRPSLLDMNKEKAANRAKVY 122

Query: 122 EFLRGIGVVPDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPV 181
           EFLRGIG+VPDELDGLELPVT DVMKERV+FL KLGLTIEDINNYPL+LGCSVKKNM+PV
Sbjct: 123 EFLRGIGIVPDELDGLELPVTADVMKERVEFLHKLGLTIEDINNYPLVLGCSVKKNMVPV 182

Query: 182 LDYLGKLGVRKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241
           LDYLGKLGVRKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 183 LDYLGKLGVRKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 242

Query: 242 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 243 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 302

Query: 302 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 361
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    
Sbjct: 303 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDTQ 362

Query: 362 XXXLKSLIELDNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQL 421
              L S I L+ ++ G++IE+MPQ VSLS S ++ H+DFL  CGFS+ Q + MVIGCPQ+
Sbjct: 363 RKLLCSAIHLNPEDLGSLIERMPQFVSLSESPMLKHIDFLTKCGFSIDQTREMVIGCPQV 422

Query: 422 LALNIDIMKHSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWL 481
           LALN+ IMK SFE+FQ EM RPL+DL  FPAFFTYGLEST+KPRH+K+++KGI CSL+W+
Sbjct: 423 LALNLGIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKPRHKKIIKKGIKCSLAWM 482

Query: 482 LNCADEKFMERMSYDTIDMEEMETTP-TFDMNSLIQP 508
           LNC+DEKF +RMSYDTID+EE+ET P +FDMN+L+QP
Sbjct: 483 LNCSDEKFEQRMSYDTIDIEEVETDPSSFDMNTLMQP 519

[Close]

BLAST of CsaV3_5G025020 vs. TAIR10
Match: AT2G44020.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-46
Identity = 270/428 (63.08%), Postives = 338/428 (78.97%), Query Frame = 0


Query: 96  LVEMKNVRLENRSKVYEFLRGIGVVPDELDGLELPVTVDVMKERVDFLLKLGLTIEDINN 155
           +++ K  +L NR K+ ++L+G+G++ DEL+ +ELP T++VM ERV+FL KLGLTI+DIN 
Sbjct: 72  VIQGKKEKLVNRVKICDYLKGLGIITDELESIELPSTIEVMCERVEFLQKLGLTIDDINE 131

Query: 156 YPLILGCSVKKNMIPVLDYLGKLGVRKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 215
           YPL+LGCSV+KN+IPVL YL K+G+ +S     XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 132 YPLMLGCSVRKNLIPVLAYLEKIGISRSKLGEFXXXXXXXXXXXXXXXXXXXXXXXXXXX 191

Query: 216 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 275
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 192 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 251

Query: 276 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 335
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 252 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 311

Query: 336 XXXXXXXXXXXXXXXXXXXLKSLIELDNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCG 395
           XXXXXXXX               +++D + F  ++EKMPQ+VSL ++ ++  ++FL    
Sbjct: 312 XXXXXXXXVKAKMSTQQYFFSLKLKIDPEGFARVVEKMPQIVSLKQNVIMKPIEFLLGRA 371

Query: 396 FSLLQVKNMVIGCPQLLALNIDIMKHSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPR 455
           F +  +  MV+ CPQ+L   +++MK+S+ F++ EMGRP+++L  +P +FTY LES IKPR
Sbjct: 372 FQVEDIAKMVVRCPQILCSRVELMKNSYYFYKTEMGRPMKELVEYPEYFTYSLESRIKPR 431

Query: 456 HRKVVQKGISCSLSWLLNCADEKFMERMSYDTIDMEEMETTPTFDMNSLIQPRNDESDSE 515
           ++K+  KGI  SL+W LNC+D++F ER+  + ID +     PTFDM   ++    E  ++
Sbjct: 432 YQKLQSKGIRSSLNWFLNCSDQRFEERLQGNFIDPD--TEGPTFDMGGKLEMPGGEIVTD 491

Query: 516 YEEDSEEE 524
            EED  ++
Sbjct: 492 EEEDESDD 497

[Close]

BLAST of CsaV3_5G025020 vs. TAIR10
Match: AT2G21710.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 70.9 bits (172), Expect = 2.7e-12
Identity = 49/163 (30.06%), Postives = 84/163 (51.53%), Query Frame = 0


Query: 365 NFGTIIEKMPQVVSLSRSAVIN-HVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMKHSF 424
           + G +I   P ++  S    +  ++ +  + G    Q+  M+   P LL  N+D ++  +
Sbjct: 477 DIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVDNLRPKY 536

Query: 425 EFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFMERM 484
            + +  M RPL+DL  FP FF+Y LE  I PRH  +V+  ++  L ++L C DE+F ER 
Sbjct: 537 RYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEF-ERR 596

Query: 485 SYDTIDMEEMETTPTFDMNSLIQPRNDE-SDSE--YEEDSEEE 524
             D ++  E         +S  QP ++  SD E  + +++EEE
Sbjct: 597 VRDKVERRERFEAGLDSEDS--QPSDENISDQEIAFSDEAEEE 636

[Close]

BLAST of CsaV3_5G025020 vs. TAIR10
Match: AT2G34620.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-09
Identity = 28/82 (34.15%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 404 MVIGCPQLLALNID-IMKHSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQK 463
           M++ CP L   +I+   K   ++F  E+   LE+L  FP +F + LE  IKPRH + +++
Sbjct: 214 MILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMER 273

Query: 464 GISCSLSWLLNCADEKFMERMS 485
           G+   LS +L   DE+F + ++
Sbjct: 274 GLELPLSLMLKSTDEEFEQLLT 295

[Close]

BLAST of CsaV3_5G025020 vs. TAIR10
Match: AT3G18870.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 59.7 bits (143), Expect = 6.3e-09
Identity = 31/94 (32.98%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 390 FLKTCGFSLLQVKNMVIGCPQLLALNI-DIMKHSFEFFQMEMGRPLEDLATFPAFFTYGL 449
           FLK+ GF   +   +    P +   ++ D ++  FEF   +M R LE+L  FP +F + L
Sbjct: 178 FLKSIGFEHEEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSL 237

Query: 450 ESTIKPRHRKVVQKGISCSLSWLLNCADEKFMER 483
              I+PRH  + +K +  SLS +L   D+KF  +
Sbjct: 238 GKRIRPRHWHLKKKNVRVSLSRMLMWGDQKFYSK 271

[Close]

BLAST of CsaV3_5G025020 vs. Swiss-Prot
Match: sp|Q9ZT96|MTEF4_ARATH (Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF4 PE=1 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.2e-88
Identity = 366/517 (70.79%), Postives = 414/517 (80.08%), Query Frame = 0


Query: 2   IRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKR--KGLITQLQYSHGDR 61
           IR   G  KP F L+ FE  +      +  +  T+    NH+KR   G+   +Q +  +R
Sbjct: 3   IRFCNGFTKPGFLLVHFEPPSFFAVRSRSLSDSTYGNLCNHKKRPGTGIGLTVQCAIANR 62

Query: 62  RTVFKSLHS--------TISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVY 121
           R   +SL S                            SLYSRPSL++M   +  NR+KVY
Sbjct: 63  RFSSRSLDSPRRXXXXXXXXXXXXXXXXXXXXXXXXKSLYSRPSLLDMNKEKAANRAKVY 122

Query: 122 EFLRGIGVVPDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPV 181
           EFLRGIG+VPDELDGLELPVT DVMKERV+FL KLGLTIEDINNYPL+LGCSVKKNM+PV
Sbjct: 123 EFLRGIGIVPDELDGLELPVTADVMKERVEFLHKLGLTIEDINNYPLVLGCSVKKNMVPV 182

Query: 182 LDYLGKLGVRKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241
           LDYLGKLGVRKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 183 LDYLGKLGVRKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 242

Query: 242 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 243 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 302

Query: 302 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 361
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    
Sbjct: 303 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDTQ 362

Query: 362 XXXLKSLIELDNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQL 421
              L S I L+ ++ G++IE+MPQ VSLS S ++ H+DFL  CGFS+ Q + MVIGCPQ+
Sbjct: 363 RKLLCSAIHLNPEDLGSLIERMPQFVSLSESPMLKHIDFLTKCGFSIDQTREMVIGCPQV 422

Query: 422 LALNIDIMKHSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWL 481
           LALN+ IMK SFE+FQ EM RPL+DL  FPAFFTYGLEST+KPRH+K+++KGI CSL+W+
Sbjct: 423 LALNLGIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKPRHKKIIKKGIKCSLAWM 482

Query: 482 LNCADEKFMERMSYDTIDMEEMETTP-TFDMNSLIQP 508
           LNC+DEKF +RMSYDTID+EE+ET P +FDMN+L+QP
Sbjct: 483 LNCSDEKFEQRMSYDTIDIEEVETDPSSFDMNTLMQP 519

[Close]

BLAST of CsaV3_5G025020 vs. Swiss-Prot
Match: sp|Q6AUK6|MTEF4_ORYSJ (Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.9e-65
Identity = 314/415 (75.66%), Postives = 352/415 (84.82%), Query Frame = 0


Query: 90  LYSRPSLVEMKNVRLENRSKVYEFLRGIGVVPDELDGLELPVTVDVMKERVDFLLKLGLT 149
           LY+RPSL++M+  R   R+ V  FL  +GV P EL GLELP TVDVM+ERV+FL  L L+
Sbjct: 66  LYARPSLLDMERGRAARRADVDAFLASLGVDPGELAGLELPATVDVMRERVEFLHSLDLS 125

Query: 150 IEDINNYPLILGCSVKKNMIPVLDYLGKLGVRKSTFTXXXXXXXXXXXXXXXXXXXXXXX 209
            ED+  YPL LGCSV+KNM+PVLDYLGKLGVR+     XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 126 NEDLAAYPLALGCSVRKNMVPVLDYLGKLGVRQDALPDXXXXXXXXXXXXXXXXXXXXXX 185

Query: 210 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 269
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 186 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 245

Query: 270 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 329
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 246 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 305

Query: 330 XXXXXXXXXXXXXXXXXXXXXXXXXLKSLIELDNDNFGTIIEKMPQVVSLSRSAVINHVD 389
           XXXXXXXXXXXXXXXXXXXX      +S I + +++FG +IE+MPQ +SL R+AV+ HV+
Sbjct: 306 XXXXXXXXXXXXXXXXXXXXTQQSLFESSILVSSEDFGRVIERMPQAISLGRTAVLKHVN 365

Query: 390 FLKTCGFSLLQVKNMVIGCPQLLALNIDIMKHSFEFFQMEMGRPLEDLATFPAFFTYGLE 449
           FL +CGF L QV  MV+ CPQLLALN+DIMK SFE+FQ EM R LE+L  FPAFFTYGLE
Sbjct: 366 FLTSCGFLLSQVSKMVVACPQLLALNMDIMKMSFEYFQNEMERDLEELVEFPAFFTYGLE 425

Query: 450 STIKPRHRKVVQKGISCSLSWLLNCADEKFMERMSYDTIDMEEMETTPTFDMNSL 505
           ST++PRH  V +KG +CSL+WLLNC+D KF ERM YDTI +EEME   +FD N+L
Sbjct: 426 STVRPRHEMVAKKGFTCSLAWLLNCSDAKFDERMKYDTIGIEEMEVDNSFDTNTL 480

[Close]

BLAST of CsaV3_5G025020 vs. Swiss-Prot
Match: sp|B6TGN4|MTEF4_MAIZE (Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MTERF4 PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.3e-64
Identity = 316/451 (70.07%), Postives = 364/451 (80.71%), Query Frame = 0


Query: 60  RTVFKSLHSTISSKSYSSKVDRKEGSI-----GSSLYSRPSLVEMKNVRLENRSKVYEFL 119
           R + +   ++ +S S   + DR+          SSLY+RPSL++M+  R   R+ V  FL
Sbjct: 22  RRLLRLRAASSASASAPPRADRRSPGTPSRRPSSSLYARPSLLDMERDRATRRADVDAFL 81

Query: 120 RGIGVVPDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDY 179
             +GV P EL GLELPVTVDVM+ER +FL  LGLT ED+  YPL LGCSV+KNM+PVLDY
Sbjct: 82  TSLGVDPGELAGLELPVTVDVMRERAEFLGSLGLTQEDLAAYPLALGCSVRKNMVPVLDY 141

Query: 180 LGKLGVRKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 239
           LGKLGVR+      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 142 LGKLGVRRDALPDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 201

Query: 240 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 299
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 202 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 261

Query: 300 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 359
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      
Sbjct: 262 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQQSL 321

Query: 360 LKSLIELDNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLAL 419
            +S I +  ++FG ++E+MPQ +SL R+AV+ HV+FL  CGF L QV  MV+ CPQLLAL
Sbjct: 322 FESSILVSREDFGRVLERMPQAISLGRAAVLKHVNFLTACGFMLSQVSKMVVACPQLLAL 381

Query: 420 NIDIMKHSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNC 479
           NIDIM+ +FE+F+ EM R LE+L  FPAFFTYG+EST++PRH  V +KG++CSL+WLLNC
Sbjct: 382 NIDIMRMNFEYFKNEMERDLEELVEFPAFFTYGIESTVRPRHEMVSRKGLTCSLAWLLNC 441

Query: 480 ADEKFMERMSYDTIDMEEMETTPTFDMNSLI 506
           +D KF ERM YDTI +EEME   + DMN+ +
Sbjct: 442 SDAKFDERMKYDTIGVEEMEREDSSDMNASV 472

[Close]

BLAST of CsaV3_5G025020 vs. Swiss-Prot
Match: sp|F4IHL3|MTEF2_ARATH (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.9e-11
Identity = 49/163 (30.06%), Postives = 84/163 (51.53%), Query Frame = 0


Query: 365 NFGTIIEKMPQVVSLSRSAVIN-HVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMKHSF 424
           + G +I   P ++  S    +  ++ +  + G    Q+  M+   P LL  N+D ++  +
Sbjct: 477 DIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVDNLRPKY 536

Query: 425 EFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFMERM 484
            + +  M RPL+DL  FP FF+Y LE  I PRH  +V+  ++  L ++L C DE+F ER 
Sbjct: 537 RYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEF-ERR 596

Query: 485 SYDTIDMEEMETTPTFDMNSLIQPRNDE-SDSE--YEEDSEEE 524
             D ++  E         +S  QP ++  SD E  + +++EEE
Sbjct: 597 VRDKVERRERFEAGLDSEDS--QPSDENISDQEIAFSDEAEEE 636

[Close]

BLAST of CsaV3_5G025020 vs. Swiss-Prot
Match: sp|Q9FK23|MTEF8_ARATH (Transcription termination factor MTERF8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF8 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.1e-06
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 395 GFSLLQVKNMVIGCPQLLALNIDIMKHSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKP 454
           G S   +  M    PQ+L  N   ++   E+    MGR +E+L  FPAF  Y L+S IK 
Sbjct: 403 GLSFEDILAMSTKHPQVLQYNYTSLEEKLEYLIEYMGREVEELLAFPAFLGYKLDSRIKH 462

Query: 455 RH-RKVVQKGISCSLSWLLNCADEKFMERMSYDTIDM 491
           R+  K+  +G + SL+ LL  + E+F +  + D I+M
Sbjct: 463 RYEEKLKSRGENMSLNKLLTVSAERFSK--AADNIEM 497

[Close]

BLAST of CsaV3_5G025020 vs. TrEMBL
Match: tr|A0A0A0KRV7|A0A0A0KRV7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G466880 PE=4 SV=1)

HSP 1 Score: 638.6 bits (1646), Expect = 1.2e-179
Identity = 524/524 (100.00%), Postives = 524/524 (100.00%), Query Frame = 0


Query: 1   MIRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRR 60
           MIRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRR
Sbjct: 1   MIRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRR 60

Query: 61  TVFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVV 120
           TVFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVV
Sbjct: 61  TVFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVV 120

Query: 121 PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGV 180
           PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGV
Sbjct: 121 PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGV 180

Query: 181 RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIE 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIE
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIE 360

Query: 361 LDNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMK 420
           LDNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMK
Sbjct: 361 LDNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMK 420

Query: 421 HSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFM 480
           HSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFM
Sbjct: 421 HSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFM 480

Query: 481 ERMSYDTIDMEEMETTPTFDMNSLIQPRNDESDSEYEEDSEEES 525
           ERMSYDTIDMEEMETTPTFDMNSLIQPRNDESDSEYEEDSEEES
Sbjct: 481 ERMSYDTIDMEEMETTPTFDMNSLIQPRNDESDSEYEEDSEEES 524

[Close]

BLAST of CsaV3_5G025020 vs. TrEMBL
Match: tr|A0A1S3CR33|A0A1S3CR33_CUCME (transcription termination factor MTERF4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503367 PE=4 SV=1)

HSP 1 Score: 595.1 bits (1533), Expect = 1.5e-166
Identity = 503/524 (95.99%), Postives = 509/524 (97.14%), Query Frame = 0


Query: 1   MIRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRR 60
           MIRGHAGV KPN S MLFEMSTLECHNFKFTAT TF     HEKR+ L TQLQYSHGDRR
Sbjct: 1   MIRGHAGVVKPNVSFMLFEMSTLECHNFKFTATPTFLTSCIHEKRRCLTTQLQYSHGDRR 60

Query: 61  TVFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVV 120
           TVFKSLHSTISSK YSSKV RK GS GSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVV
Sbjct: 61  TVFKSLHSTISSKPYSSKVGRKGGSSGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVV 120

Query: 121 PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGV 180
           PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPL+LGCSVKKNMIPVLDYLGKLGV
Sbjct: 121 PDELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGV 180

Query: 181 RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 RKSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIE 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIE
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIE 360

Query: 361 LDNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMK 420
           LDNDNFGTIIEKMPQ+VSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMK
Sbjct: 361 LDNDNFGTIIEKMPQIVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMK 420

Query: 421 HSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFM 480
           HSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKF+
Sbjct: 421 HSFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFV 480

Query: 481 ERMSYDTIDMEEMETTPTFDMNSLIQPRNDESDSEYEEDSEEES 525
           ERMSYDTIDMEEMETTPTFDMNSL+QPRNDESDSEYEEDSEEE+
Sbjct: 481 ERMSYDTIDMEEMETTPTFDMNSLVQPRNDESDSEYEEDSEEET 524

[Close]

BLAST of CsaV3_5G025020 vs. TrEMBL
Match: tr|M5W7W6|M5W7W6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G247800 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 7.1e-108
Identity = 394/521 (75.62%), Postives = 456/521 (87.52%), Query Frame = 0


Query: 2   IRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRRT 61
           IR +AG+ KP+F L+  E+  L   N +FT+  TF++P + EK  G+IT+ QYS  DRR+
Sbjct: 3   IRSYAGITKPSFLLVHPELPALTSRNPQFTSLFTFRIPCSREKLTGMITRSQYSVADRRS 62

Query: 62  VFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVVP 121
             +   S++S+K+ ++++ R++G   SSLYSRPSL++MKN R+ENR++VYEFLRGIG+VP
Sbjct: 63  ATRYGDSSVSNKN-TNRLGRRQGG-SSSLYSRPSLLDMKNDRMENRARVYEFLRGIGIVP 122

Query: 122 DELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGVR 181
           DELDGLELPVTV+VM+ERVDFL KLGLTIED+NNYPL+LGCSVKKNMIPVLDYLGKLGVR
Sbjct: 123 DELDGLELPVTVEVMRERVDFLHKLGLTIEDLNNYPLVLGCSVKKNMIPVLDYLGKLGVR 182

Query: 182 KSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241
           KSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 183 KSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 242

Query: 242 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 243 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 302

Query: 302 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIEL 361
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    LKS+I+L
Sbjct: 303 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQSSLKSVIDL 362

Query: 362 DNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMKH 421
             + FG ++EKMPQVVSLS   ++ HVDFLK CGFSL QV+ MV GCPQLLALN+DIMK 
Sbjct: 363 SPEEFGGVVEKMPQVVSLSDRPMMKHVDFLKNCGFSLEQVRKMVAGCPQLLALNLDIMKL 422

Query: 422 SFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFME 481
           SF+FFQ EM RPL+DL  FPAFFTYGLESTIKPRH+ V +KG+ CSL WLLNC+D+KF +
Sbjct: 423 SFDFFQTEMQRPLDDLVDFPAFFTYGLESTIKPRHKMVSKKGLKCSLGWLLNCSDDKFAQ 482

Query: 482 RMSYDTIDMEEMETTPTFDMNSLIQPRNDESDSEYEEDSEE 523
           RM YDTI+MEEME  P+FDMN+L +PR+D+S S+Y++  ++
Sbjct: 483 RMDYDTIEMEEMELLPSFDMNTLTEPRSDDSGSDYDDSDDD 521

[Close]

BLAST of CsaV3_5G025020 vs. TrEMBL
Match: tr|A0A1R3I5C0|A0A1R3I5C0_COCAP (Mitochodrial transcription termination factor-related protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14815 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 6.0e-107
Identity = 394/522 (75.48%), Postives = 451/522 (86.40%), Query Frame = 0


Query: 2   IRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRRT 61
           IR  AG+AK +F L   E+  L  H  K T T T  +P N E + GL+T++ +     RT
Sbjct: 13  IRSCAGIAKSSFLLAHSELPALTFHKPKLTWTSTLNIPSNCESKFGLVTRV-HCFVANRT 72

Query: 62  VFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVVP 121
              +  S   SK  + ++ +K+G   SSLYSRPSL EMKN R+  R+KVYEFLRG+G++P
Sbjct: 73  YSSTSVSPSRSKRNNVRLGQKQGK-SSSLYSRPSLAEMKNDRIAIRAKVYEFLRGLGIIP 132

Query: 122 DELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGVR 181
           DELDGLELPVTV+VMKER+DFL KLGLTIEDINNYPL+LGCSVKKNMIPVLDYLGKLGVR
Sbjct: 133 DELDGLELPVTVEVMKERIDFLHKLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVR 192

Query: 182 KSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241
           KSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 193 KSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 252

Query: 242 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 253 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 312

Query: 302 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIEL 361
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      L+S+I++
Sbjct: 313 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGQRSLLQSIIDM 372

Query: 362 DNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMKH 421
            +++FGT++EKMPQVVSLS ++V+ HVDFLK CGFSL QV+ MV+GCPQ+LALN+DIMK 
Sbjct: 373 GHEDFGTVVEKMPQVVSLSNTSVVKHVDFLKDCGFSLQQVRTMVVGCPQVLALNLDIMKL 432

Query: 422 SFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFME 481
           SF++FQM+M RPL+DL  FPAFFTYGLESTIKPR + V +KG  CSLSWLLNC+DEKF +
Sbjct: 433 SFDYFQMQMQRPLDDLVAFPAFFTYGLESTIKPRDKIVAKKGFKCSLSWLLNCSDEKFKD 492

Query: 482 RMSYDTIDMEEMETTPTFDMNSLIQPRNDESDSEYEEDSEEE 524
           RM+YD+I+MEEMET P+FDMNSL++PR+DESDSEYE+DS++E
Sbjct: 493 RMNYDSIEMEEMETVPSFDMNSLMEPRSDESDSEYEDDSDDE 532

[Close]

BLAST of CsaV3_5G025020 vs. TrEMBL
Match: tr|A0A2I4F0X5|A0A2I4F0X5_9ROSI (transcription termination factor MTERF4, chloroplastic OS=Juglans regia OX=51240 GN=LOC108994510 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 5.1e-106
Identity = 392/522 (75.10%), Postives = 449/522 (86.02%), Query Frame = 0


Query: 2   IRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRRT 61
           IR +AG+ KP   L+  ++  L     K ++  T ++P NH +R GL+T+ QYS  DR  
Sbjct: 3   IRSYAGIRKPGLLLVHSDVPVLTVLKPKVSSLSTLKVPGNHGRRVGLVTRFQYSVADRTF 62

Query: 62  VFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVVP 121
              S+ S+   K  ++++ RK+G   SSLYSRPSL EMKN R+ NR++VYEFLRGIG++P
Sbjct: 63  ASSSVDSS-RFKQGTARLGRKQGG-PSSLYSRPSLSEMKNERMANRARVYEFLRGIGIIP 122

Query: 122 DELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGVR 181
           DELDGLELPVT +VM+ERVDFL KLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGVR
Sbjct: 123 DELDGLELPVTAEVMRERVDFLRKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGVR 182

Query: 182 KSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241
           KSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 183 KSTFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 242

Query: 242 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 243 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 302

Query: 302 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSLIEL 361
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       L S+I++
Sbjct: 303 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLSQQSLLNSVIDI 362

Query: 362 DNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMKH 421
             ++FG ++EKMPQVVSLS + VI HVDFLK CGFSL QV+ MV+GCPQLLALN+DIMK 
Sbjct: 363 GPEDFGRVLEKMPQVVSLSNAPVIKHVDFLKICGFSLEQVRTMVVGCPQLLALNLDIMKL 422

Query: 422 SFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFME 481
           +F+++QMEM RPL+DL  FPAFFTYGLESTIKPRHR V +KG+ CSL+WLLNC+D KF E
Sbjct: 423 NFDYYQMEMKRPLDDLVMFPAFFTYGLESTIKPRHRVVAKKGLKCSLAWLLNCSDVKFDE 482

Query: 482 RMSYDTIDMEEMETTPTFDMNSLIQPRNDESDSEYEEDSEEE 524
           RM+YDTIDMEEMET  +F+MN+L++PR+DES S+Y+EDSE++
Sbjct: 483 RMTYDTIDMEEMETEQSFNMNTLMEPRSDESASDYDEDSEDD 522

The following BLAST results are available for this feature:

BLAST of CsaV3_5G025020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143818.1	1.8e-179	100.00	PREDICTED: uncharacterized protein LOC101216006 [Cucumis sativus] >KGN51142.1 hy...	[more]
XP_008465763.1	2.3e-166	95.99	PREDICTED: transcription termination factor MTERF4, chloroplastic [Cucumis melo]...	[more]
XP_023538106.1	1.0e-150	90.27	transcription termination factor MTERF4, chloroplastic [Cucurbita pepo subsp. pe...	[more]
XP_022938209.1	1.1e-149	90.08	transcription termination factor MTERF4, chloroplastic [Cucurbita moschata] >XP_...	[more]
XP_022965673.1	4.8e-148	89.50	transcription termination factor MTERF4, chloroplastic [Cucurbita maxima] >XP_02...	[more]

BLAST of CsaV3_5G025020 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02990.1	1.2e-89	70.79	Mitochondrial transcription termination factor family protein	[more]
AT2G44020.1	1.3e-46	63.08	Mitochondrial transcription termination factor family protein	[more]
AT2G21710.1	2.7e-12	30.06	Mitochondrial transcription termination factor family protein	[more]
AT2G34620.1	1.6e-09	34.15	Mitochondrial transcription termination factor family protein	[more]
AT3G18870.1	6.3e-09	32.98	Mitochondrial transcription termination factor family protein	[more]

BLAST of CsaV3_5G025020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZT96\|MTEF4_ARATH	2.2e-88	70.79	Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana O...	[more]
sp\|Q6AUK6\|MTEF4_ORYSJ	5.9e-65	75.66	Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. ja...	[more]
sp\|B6TGN4\|MTEF4_MAIZE	1.3e-64	70.07	Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MT...	[more]
sp\|F4IHL3\|MTEF2_ARATH	4.9e-11	30.06	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
sp\|Q9FK23\|MTEF8_ARATH	8.1e-06	35.05	Transcription termination factor MTERF8, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of CsaV3_5G025020 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KRV7\|A0A0A0KRV7_CUCSA	1.2e-179	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G466880 PE=4 SV=1	[more]
tr\|A0A1S3CR33\|A0A1S3CR33_CUCME	1.5e-166	95.99	transcription termination factor MTERF4, chloroplastic OS=Cucumis melo OX=3656 G...	[more]
tr\|M5W7W6\|M5W7W6_PRUPE	7.1e-108	75.62	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G247800 PE=4 SV=1	[more]
tr\|A0A1R3I5C0\|A0A1R3I5C0_COCAP	6.0e-107	75.48	Mitochodrial transcription termination factor-related protein OS=Corchorus capsu...	[more]
tr\|A0A2I4F0X5\|A0A2I4F0X5_9ROSI	5.1e-106	75.10	transcription termination factor MTERF4, chloroplastic OS=Juglans regia OX=51240...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003690	double-stranded DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR038538	MTERF_sf
IPR003690	MTERF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0008380	RNA splicing
biological_process	GO:0042794	rRNA transcription from plastid promoter
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009536	plastid
molecular_function	GO:0003690	double-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G025020.1	CsaV3_5G025020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 402..433 e-value: 0.079 score: 22.1 coord: 186..217 e-value: 5.4E-4 score: 29.3 coord: 434..465 e-value: 0.055 score: 22.6 coord: 367..397 e-value: 0.023 score: 23.9 coord: 150..181 e-value: 0.0027 score: 27.0 coord: 87..120 e-value: 560.0 score: 5.9 coord: 222..253 e-value: 0.0014 score: 27.9 coord: 330..362 e-value: 300.0 score: 7.9 coord: 294..325 e-value: 5.8E-4 score: 29.2 coord: 258..289 e-value: 3.0E-4 score: 30.1
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 172..479 e-value: 5.1E-105 score: 350.8
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	G3DSA:1.25.70.10		coord: 85..200 e-value: 4.8E-8 score: 34.5 coord: 247..490 e-value: 3.5E-43 score: 149.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 496..524
None	No IPR available	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 11..522
None	No IPR available	PANTHER	PTHR13068:SF24	TRANSCRIPTION TERMINATION FACTOR MTERF4, CHLOROPLASTIC	coord: 11..522

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G025020	CSPI05G16000	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G025020	Cucsa.033690	Cucumber (Gy14) v1	cgycucB008
CsaV3_5G025020	CsGy5G015710	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G025020	MELO3C002988	Melon (DHL92) v3.5.1	cucmeB359
CsaV3_5G025020	MELO3C002988.2	Melon (DHL92) v3.6.1	cucmedB351
CsaV3_5G025020	Bhi06G000705	Wax gourd	cucwgoB479

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None