CsaV3_5G024660 (gene) Cucumber (Chinese Long) v3

NameCsaV3_5G024660
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionNADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like
Locationchr5 : 19614857 .. 19615789 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCTCATCATCGTCCTCTCTCTCCCTCGCGCGCCGCGACCCCCCCCCCCCCTTCCTTCTCTTTTCCCTTCTCCTTTCCCTTCTCCTTTCCTTCTCTTTTCTCTTTTCCTTCCGCCGTTCCCTTCCGTCTTTCTTTCCGCCGCAGCCCAGCCGCCCCATCCTTCCCCTTCTCTCCGTTCGCCAAGCAAAACCGCCACCGACCGACCTCCATTCCTCTTCTCCTTCCCGTTCGCAGCCCCGCCGCAAACCGTCGCCTCACTTCCCTTCCATTTTCTTCTTCCGTTCGCAGCCCTGCCGCAACCCTTCCCTTCCATTTTCCTCTTCTCTTCAGTTCGCAAAGCAGCCGTACACGTCCAGATCTGCCGCCGTCCAGATCTGCACCGCAAGACCGCCCGTTGCCCTTCCGCCGCTGCCCGGTCCAGATCTGCACCATTTTCGCGTCTTGTTCTGTCTCCGTCGAAGCCGAGCCACCGTGTGAAGCAGTAACCGCCACGTCTGCCGCTCACAACCGCCGTCCACCGATCCCTTCTCCTCCGTTGTCTGCACTGCCGCGCCGGAAGCCTGGTTTCAGCCAGCCTCTGTCGTCGTTGAGACGTGCCTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTAAAGATCAGCTTCGTTTTCAACGGTACTGCCCTAACTTCTCCTTTTTGTCTTTTGCATCGATTTCTTTCCTCAATTTTATATCTTTGACTCTTTTATGCGGGGATTTAAGGTATACTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAGCTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGGTTTGCTTTTCTTGTTCCTAACTTACAATACTCAATTTACTTCCTTTGTTCTTTTTGGTGA

mRNA sequence

ATGGATCCTCATCATCGTCCTCTCTCTCCCTCGCGCGCCGCGACCCCCCCCCCCCCTTCCTTCTCTTTTCCCTTCTCCTTTCCCTTCTCCTTTCCTTCTCTTTTCTCTTTTCCTTCCGCCGTTCCCTTCCGTCTTTCTTTCCGCCGCAGCCCAGCCGCCCCATCCTTCCCCTTCTCTCCGTTCGCCAAGCAAAACCGCCACCGACCGACCTCCATTCCTCTTCTCCTTCCCGTTCGCAGCCCCGCCGCAAACCGTCGCCTCACTTCCCTTCCATTTTCTTCTTCCGTTCGCAGCCCTGCCGCAACCCTTCCCTTCCATTTTCCTCTTCTCTTCAGTTCGCAAAGCAGCCGTACACGTCCAGATCTGCCGCCGTCCAGATCTGCACCGCAAGACCGCCCGTTGCCCTTCCGCCGCTGCCCGGTCCAGATCTGCACCATTTTCGCGTCTTGTTCTGTCTCCGTCGAAGCCGAGCCACCGTGTGAAGCAGTAACCGCCACGTCTGCCGCTCACAACCGCCGTCCACCGATCCCTTCTCCTCCGTTGTCTGCACTGCCGCGCCGGAAGCCTGGTTTCAGCCAGCCTCTGTCGTCGTTGAGACGTGCCTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTAAAGATCAGCTTCGTTTTCAACGGTACTGCCCTAACTTCTCCTTTTTGTCTTTTGCATCGATTTCTTTCCTCAATTTTATATCTTTGACTCTTTTATGCGGGGATTTAAGGTATACTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAGCTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGGTTTGCTTTTCTTGTTCCTAACTTACAATACTCAATTTACTTCCTTTGTTCTTTTTGGTGA

Coding sequence (CDS)

ATGGATCCTCATCATCGTCCTCTCTCTCCCTCGCGCGCCGCGACCCCCCCCCCCCCTTCCTTCTCTTTTCCCTTCTCCTTTCCCTTCTCCTTTCCTTCTCTTTTCTCTTTTCCTTCCGCCGTTCCCTTCCGTCTTTCTTTCCGCCGCAGCCCAGCCGCCCCATCCTTCCCCTTCTCTCCGTTCGCCAAGCAAAACCGCCACCGACCGACCTCCATTCCTCTTCTCCTTCCCGTTCGCAGCCCCGCCGCAAACCGTCGCCTCACTTCCCTTCCATTTTCTTCTTCCGTTCGCAGCCCTGCCGCAACCCTTCCCTTCCATTTTCCTCTTCTCTTCAGTTCGCAAAGCAGCCGTACACGTCCAGATCTGCCGCCGTCCAGATCTGCACCGCAAGACCGCCCGTTGCCCTTCCGCCGCTGCCCGGTCCAGATCTGCACCATTTTCGCGTCTTGTTCTGTCTCCGTCGAAGCCGAGCCACCGTGTGAAGCAGTAACCGCCACGTCTGCCGCTCACAACCGCCGTCCACCGATCCCTTCTCCTCCGTTGTCTGCACTGCCGCGCCGGAAGCCTGGTTTCAGCCAGCCTCTGTCGTCGTTGAGACGTGCCTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTAAAGATCAGCTTCGTTTTCAACGGTACTGCCCTAACTTCTCCTTTTTGTCTTTTGCATCGATTTCTTTCCTCAATTTTATATCTTTGACTCTTTTATGCGGGGATTTAAGGTATACTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAGCTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGGTTTGCTTTTCTTGTTCCTAACTTACAATACTCAATTTACTTCCTTTGTTCTTTTTGGTGA

Protein sequence

MDPHHRPLSPSRAATPPPPSFSFPFSFPFSFPSLFSFPSAVPFRLSFRRSPAAPSFPFSPFAKQNRHRPTSIPLLLPVRSPAANRRLTSLPFSSSVRSPAATLPFHFPLLFSSQSSRTRPDLPPSRSAPQDRPLPFRRCPVQICTIFASCSVSVEAEPPCEAVTATSAAHNRRPPIPSPPLSALPRRKPGFSQPLSSLRRAFSLYDQINLIDNVPKDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFAFLVPNLQYSIYFLCSFW
BLAST of CsaV3_5G024660 vs. NCBI nr
Match: XP_008460070.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 1.6e-29
Identity = 73/105 (69.52%), Postives = 74/105 (70.48%), Query Frame = 0

Query: 186 RRKPGFSQPLSSLRRAFSLYDQINLIDNVPKDQLRFQRYCPNFSFLSFASISFLNFISLT 245
           RRKPGFSQPL SLRRAFSLYDQINLIDNVPKDQLRFQ                       
Sbjct: 22  RRKPGFSQPLPSLRRAFSLYDQINLIDNVPKDQLRFQ----------------------- 81

Query: 246 LLCGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSD 291
                 RYTETGFTVNGVDYEGSLLCVGNLLMSW+PKKFSEIT D
Sbjct: 82  ------RYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPD 97

BLAST of CsaV3_5G024660 vs. NCBI nr
Match: XP_022155780.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022818 [Momordica charantia])

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-27
Identity = 68/105 (64.76%), Postives = 74/105 (70.48%), Query Frame = 0

Query: 186 RRKPGFSQPLSSLRRAFSLYDQINLIDNVPKDQLRFQRYCPNFSFLSFASISFLNFISLT 245
           RR+PG SQPL SLRRAFSLYDQINLIDNVP+DQLRFQ                       
Sbjct: 22  RRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ----------------------- 81

Query: 246 LLCGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSD 291
                 RYTETGFTVNGVDYEGSLLCVGNLLMSW+P+KFSEIT++
Sbjct: 82  ------RYTETGFTVNGVDYEGSLLCVGNLLMSWSPRKFSEITAE 97

BLAST of CsaV3_5G024660 vs. NCBI nr
Match: XP_022964366.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucurbita moschata])

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-27
Identity = 68/105 (64.76%), Postives = 73/105 (69.52%), Query Frame = 0

Query: 186 RRKPGFSQPLSSLRRAFSLYDQINLIDNVPKDQLRFQRYCPNFSFLSFASISFLNFISLT 245
           RR+PG SQPL SLRRAFSLYDQINLIDNVP+DQLRFQ                       
Sbjct: 22  RRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ----------------------- 81

Query: 246 LLCGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSD 291
                 RYTETGFTVNG+DYEGSLLCVGNLLMSW+PKKFSEIT +
Sbjct: 82  ------RYTETGFTVNGLDYEGSLLCVGNLLMSWSPKKFSEITPE 97

BLAST of CsaV3_5G024660 vs. NCBI nr
Match: XP_023513625.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-27
Identity = 68/105 (64.76%), Postives = 73/105 (69.52%), Query Frame = 0

Query: 186 RRKPGFSQPLSSLRRAFSLYDQINLIDNVPKDQLRFQRYCPNFSFLSFASISFLNFISLT 245
           RR+PG SQPL SLRRAFSLYDQINLIDNVP+DQLRFQ                       
Sbjct: 22  RRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ----------------------- 81

Query: 246 LLCGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSD 291
                 RYTETGFTVNG+DYEGSLLCVGNLLMSW+PKKFSEIT +
Sbjct: 82  ------RYTETGFTVNGLDYEGSLLCVGNLLMSWSPKKFSEITPE 97

BLAST of CsaV3_5G024660 vs. NCBI nr
Match: XP_023000217.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucurbita maxima])

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-25
Identity = 66/105 (62.86%), Postives = 72/105 (68.57%), Query Frame = 0

Query: 186 RRKPGFSQPLSSLRRAFSLYDQINLIDNVPKDQLRFQRYCPNFSFLSFASISFLNFISLT 245
           RR+PG SQPL SLRRAFSLYDQINLIDNVP+DQLRFQ                       
Sbjct: 22  RRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ----------------------- 81

Query: 246 LLCGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSD 291
                  YTETGFTVNG+DYEGSLLCVG+LLMSW+PKKFSEIT +
Sbjct: 82  ------WYTETGFTVNGLDYEGSLLCVGDLLMSWSPKKFSEITPE 97

BLAST of CsaV3_5G024660 vs. TAIR10
Match: AT2G44525.1 (Protein of unknown function (DUF498/DUF598))

HSP 1 Score: 109.0 bits (271), Expect = 5.3e-24
Identity = 59/111 (53.15%), Postives = 69/111 (62.16%), Query Frame = 0

Query: 181 LSALPRRKPGFSQP-LSSLRRAFSLYDQINLIDNVPKDQLRFQRYCPNFSFLSFASISFL 240
           + ++ +  P  S P L SLRRAFSLYDQINLIDNVP+DQLRFQ                 
Sbjct: 15  IQSMRKEVPKHSNPVLPSLRRAFSLYDQINLIDNVPEDQLRFQ----------------- 74

Query: 241 NFISLTLLCGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSD 291
                        + +T FTVNGV YEGSLLCVGNLLMSW+P+KFSEIT+D
Sbjct: 75  ------------EFNDTSFTVNGVKYEGSLLCVGNLLMSWSPRKFSEITTD 96

BLAST of CsaV3_5G024660 vs. TAIR10
Match: AT3G60150.1 (Protein of unknown function (DUF498/DUF598))

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-22
Identity = 55/96 (57.29%), Postives = 61/96 (63.54%), Query Frame = 0

Query: 195 LSSLRRAFSLYDQINLIDNVPKDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYT 254
           L SLRRAFSLYDQINLIDNVP+DQLRFQ                              + 
Sbjct: 30  LPSLRRAFSLYDQINLIDNVPEDQLRFQ-----------------------------EFD 89

Query: 255 ETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSD 291
           ET FTVNGV YEGSLLCVGNLLMSW+P+ FS+IT+D
Sbjct: 90  ETSFTVNGVKYEGSLLCVGNLLMSWSPRYFSDITTD 96

BLAST of CsaV3_5G024660 vs. TrEMBL
Match: tr|A0A1S3CB84|A0A1S3CB84_CUCME (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like OS=Cucumis melo OX=3656 GN=LOC103498992 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-29
Identity = 73/105 (69.52%), Postives = 74/105 (70.48%), Query Frame = 0

Query: 186 RRKPGFSQPLSSLRRAFSLYDQINLIDNVPKDQLRFQRYCPNFSFLSFASISFLNFISLT 245
           RRKPGFSQPL SLRRAFSLYDQINLIDNVPKDQLRFQ                       
Sbjct: 22  RRKPGFSQPLPSLRRAFSLYDQINLIDNVPKDQLRFQ----------------------- 81

Query: 246 LLCGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSD 291
                 RYTETGFTVNGVDYEGSLLCVGNLLMSW+PKKFSEIT D
Sbjct: 82  ------RYTETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPD 97

BLAST of CsaV3_5G024660 vs. TrEMBL
Match: tr|A0A2P5C6R6|A0A2P5C6R6_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_179450 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.5e-24
Identity = 63/106 (59.43%), Postives = 67/106 (63.21%), Query Frame = 0

Query: 185 PRRKPGFSQPLSSLRRAFSLYDQINLIDNVPKDQLRFQRYCPNFSFLSFASISFLNFISL 244
           P+ K  + Q L SLRRAFSLYDQINLIDNVP DQLRFQ                      
Sbjct: 23  PKPKAAYEQQLPSLRRAFSLYDQINLIDNVPDDQLRFQ---------------------- 82

Query: 245 TLLCGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSD 291
                  RYT+TGFTVNGVDYEGSLLCVGN LMSW PKK+SEIT D
Sbjct: 83  -------RYTDTGFTVNGVDYEGSLLCVGNFLMSWAPKKYSEITPD 99

BLAST of CsaV3_5G024660 vs. TrEMBL
Match: tr|A0A2P5EPY3|A0A2P5EPY3_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_167130 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 8.4e-24
Identity = 63/106 (59.43%), Postives = 67/106 (63.21%), Query Frame = 0

Query: 185 PRRKPGFSQPLSSLRRAFSLYDQINLIDNVPKDQLRFQRYCPNFSFLSFASISFLNFISL 244
           P+ K  + Q L SLRRAFSLYDQINLIDNVP DQLRFQ                      
Sbjct: 23  PKPKSAYQQTLPSLRRAFSLYDQINLIDNVPDDQLRFQ---------------------- 82

Query: 245 TLLCGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSD 291
                  RYT+TGFTVNGVDYEGSLLCVGN LMSW PKK+SEIT D
Sbjct: 83  -------RYTKTGFTVNGVDYEGSLLCVGNFLMSWAPKKYSEITPD 99

BLAST of CsaV3_5G024660 vs. TrEMBL
Match: tr|M5X2J5|M5X2J5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G110500 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 63/103 (61.17%), Postives = 66/103 (64.08%), Query Frame = 0

Query: 188 KPGFSQPLSSLRRAFSLYDQINLIDNVPKDQLRFQRYCPNFSFLSFASISFLNFISLTLL 247
           KP   Q L SLRRAFSLYDQINLIDNVP DQLRFQ                         
Sbjct: 21  KPTCQQSLPSLRRAFSLYDQINLIDNVPNDQLRFQ------------------------- 80

Query: 248 CGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSD 291
               RYT++GFTVNGVDYEGSLLCVGN+LMSW PKKFSEIT D
Sbjct: 81  ----RYTDSGFTVNGVDYEGSLLCVGNMLMSWAPKKFSEITPD 94

BLAST of CsaV3_5G024660 vs. TrEMBL
Match: tr|A0A2I4EH64|A0A2I4EH64_9ROSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like OS=Juglans regia OX=51240 GN=LOC108989549 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.9e-23
Identity = 63/103 (61.17%), Postives = 65/103 (63.11%), Query Frame = 0

Query: 188 KPGFSQPLSSLRRAFSLYDQINLIDNVPKDQLRFQRYCPNFSFLSFASISFLNFISLTLL 247
           KP     L SLRRAFSLYDQINLIDNVP+DQLRFQ                         
Sbjct: 23  KPASQAALPSLRRAFSLYDQINLIDNVPEDQLRFQ------------------------- 82

Query: 248 CGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSD 291
               RYTETGFTVNGVDYEGSLLCVGNLLMSW PKKF +IT D
Sbjct: 83  ----RYTETGFTVNGVDYEGSLLCVGNLLMSWAPKKFPQITPD 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008460070.11.6e-2969.52PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-... [more]
XP_022155780.11.9e-2764.76LOW QUALITY PROTEIN: uncharacterized protein LOC111022818 [Momordica charantia][more]
XP_022964366.13.2e-2764.76NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucur... [more]
XP_023513625.13.2e-2764.76NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucur... [more]
XP_023000217.11.0e-2562.86NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucur... [more]
Match NameE-valueIdentityDescription
AT2G44525.15.3e-2453.15Protein of unknown function (DUF498/DUF598)[more]
AT3G60150.11.0e-2257.29Protein of unknown function (DUF498/DUF598)[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CB84|A0A1S3CB84_CUCME1.0e-2969.52NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like OS=Cuc... [more]
tr|A0A2P5C6R6|A0A2P5C6R6_PARAD6.5e-2459.43Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_179450 PE... [more]
tr|A0A2P5EPY3|A0A2P5EPY3_9ROSA8.4e-2459.43Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_167130 PE=4 S... [more]
tr|M5X2J5|M5X2J5_PRUPE1.1e-2361.17Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G110500 PE=4 SV=1[more]
tr|A0A2I4EH64|A0A2I4EH64_9ROSI1.9e-2361.17NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like OS=Jug... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036748MTH938-like_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G024660.1CsaV3_5G024660.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036748MTH938-like superfamilySUPERFAMILYSSF64076MTH938-likecoord: 253..296

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None