CsaV3_5G024660 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATCCTCATCATCGTCCTCTCTCTCCCTCGCGCGCCGCGACCCCCCCCCCCCCTTCCTTCTCTTTTCCCTTCTCCTTTCCCTTCTCCTTTCCTTCTCTTTTCTCTTTTCCTTCCGCCGTTCCCTTCCGTCTTTCTTTCCGCCGCAGCCCAGCCGCCCCATCCTTCCCCTTCTCTCCGTTCGCCAAGCAAAACCGCCACCGACCGACCTCCATTCCTCTTCTCCTTCCCGTTCGCAGCCCCGCCGCAAACCGTCGCCTCACTTCCCTTCCATTTTCTTCTTCCGTTCGCAGCCCTGCCGCAACCCTTCCCTTCCATTTTCCTCTTCTCTTCAGTTCGCAAAGCAGCCGTACACGTCCAGATCTGCCGCCGTCCAGATCTGCACCGCAAGACCGCCCGTTGCCCTTCCGCCGCTGCCCGGTCCAGATCTGCACCATTTTCGCGTCTTGTTCTGTCTCCGTCGAAGCCGAGCCACCGTGTGAAGCAGTAACCGCCACGTCTGCCGCTCACAACCGCCGTCCACCGATCCCTTCTCCTCCGTTGTCTGCACTGCCGCGCCGGAAGCCTGGTTTCAGCCAGCCTCTGTCGTCGTTGAGACGTGCCTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTAAAGATCAGCTTCGTTTTCAACGGTACTGCCCTAACTTCTCCTTTTTGTCTTTTGCATCGATTTCTTTCCTCAATTTTATATCTTTGACTCTTTTATGCGGGGATTTAAGGTATACTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAGCTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGGTTTGCTTTTCTTGTTCCTAACTTACAATACTCAATTTACTTCCTTTGTTCTTTTTGGTGA ATGGATCCTCATCATCGTCCTCTCTCTCCCTCGCGCGCCGCGACCCCCCCCCCCCCTTCCTTCTCTTTTCCCTTCTCCTTTCCCTTCTCCTTTCCTTCTCTTTTCTCTTTTCCTTCCGCCGTTCCCTTCCGTCTTTCTTTCCGCCGCAGCCCAGCCGCCCCATCCTTCCCCTTCTCTCCGTTCGCCAAGCAAAACCGCCACCGACCGACCTCCATTCCTCTTCTCCTTCCCGTTCGCAGCCCCGCCGCAAACCGTCGCCTCACTTCCCTTCCATTTTCTTCTTCCGTTCGCAGCCCTGCCGCAACCCTTCCCTTCCATTTTCCTCTTCTCTTCAGTTCGCAAAGCAGCCGTACACGTCCAGATCTGCCGCCGTCCAGATCTGCACCGCAAGACCGCCCGTTGCCCTTCCGCCGCTGCCCGGTCCAGATCTGCACCATTTTCGCGTCTTGTTCTGTCTCCGTCGAAGCCGAGCCACCGTGTGAAGCAGTAACCGCCACGTCTGCCGCTCACAACCGCCGTCCACCGATCCCTTCTCCTCCGTTGTCTGCACTGCCGCGCCGGAAGCCTGGTTTCAGCCAGCCTCTGTCGTCGTTGAGACGTGCCTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTAAAGATCAGCTTCGTTTTCAACGGTACTGCCCTAACTTCTCCTTTTTGTCTTTTGCATCGATTTCTTTCCTCAATTTTATATCTTTGACTCTTTTATGCGGGGATTTAAGGTATACTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAGCTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGGTTTGCTTTTCTTGTTCCTAACTTACAATACTCAATTTACTTCCTTTGTTCTTTTTGGTGA ATGGATCCTCATCATCGTCCTCTCTCTCCCTCGCGCGCCGCGACCCCCCCCCCCCCTTCCTTCTCTTTTCCCTTCTCCTTTCCCTTCTCCTTTCCTTCTCTTTTCTCTTTTCCTTCCGCCGTTCCCTTCCGTCTTTCTTTCCGCCGCAGCCCAGCCGCCCCATCCTTCCCCTTCTCTCCGTTCGCCAAGCAAAACCGCCACCGACCGACCTCCATTCCTCTTCTCCTTCCCGTTCGCAGCCCCGCCGCAAACCGTCGCCTCACTTCCCTTCCATTTTCTTCTTCCGTTCGCAGCCCTGCCGCAACCCTTCCCTTCCATTTTCCTCTTCTCTTCAGTTCGCAAAGCAGCCGTACACGTCCAGATCTGCCGCCGTCCAGATCTGCACCGCAAGACCGCCCGTTGCCCTTCCGCCGCTGCCCGGTCCAGATCTGCACCATTTTCGCGTCTTGTTCTGTCTCCGTCGAAGCCGAGCCACCGTGTGAAGCAGTAACCGCCACGTCTGCCGCTCACAACCGCCGTCCACCGATCCCTTCTCCTCCGTTGTCTGCACTGCCGCGCCGGAAGCCTGGTTTCAGCCAGCCTCTGTCGTCGTTGAGACGTGCCTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTAAAGATCAGCTTCGTTTTCAACGGTACTGCCCTAACTTCTCCTTTTTGTCTTTTGCATCGATTTCTTTCCTCAATTTTATATCTTTGACTCTTTTATGCGGGGATTTAAGGTATACTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAGCTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGGTTTGCTTTTCTTGTTCCTAACTTACAATACTCAATTTACTTCCTTTGTTCTTTTTGGTGA MDPHHRPLSPSRAATPPPPSFSFPFSFPFSFPSLFSFPSAVPFRLSFRRSPAAPSFPFSPFAKQNRHRPTSIPLLLPVRSPAANRRLTSLPFSSSVRSPAATLPFHFPLLFSSQSSRTRPDLPPSRSAPQDRPLPFRRCPVQICTIFASCSVSVEAEPPCEAVTATSAAHNRRPPIPSPPLSALPRRKPGFSQPLSSLRRAFSLYDQINLIDNVPKDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFAFLVPNLQYSIYFLCSFW
BLAST of CsaV3_5G024660 vs. NCBI nr
Match: XP_008460070.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucumis melo]) HSP 1 Score: 139.8 bits (351), Expect = 1.6e-29 Identity = 73/105 (69.52%), Postives = 74/105 (70.48%), Query Frame = 0
BLAST of CsaV3_5G024660 vs. NCBI nr
Match: XP_022155780.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022818 [Momordica charantia]) HSP 1 Score: 132.9 bits (333), Expect = 1.9e-27 Identity = 68/105 (64.76%), Postives = 74/105 (70.48%), Query Frame = 0
BLAST of CsaV3_5G024660 vs. NCBI nr
Match: XP_022964366.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucurbita moschata]) HSP 1 Score: 132.1 bits (331), Expect = 3.2e-27 Identity = 68/105 (64.76%), Postives = 73/105 (69.52%), Query Frame = 0
BLAST of CsaV3_5G024660 vs. NCBI nr
Match: XP_023513625.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 132.1 bits (331), Expect = 3.2e-27 Identity = 68/105 (64.76%), Postives = 73/105 (69.52%), Query Frame = 0
BLAST of CsaV3_5G024660 vs. NCBI nr
Match: XP_023000217.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucurbita maxima]) HSP 1 Score: 127.1 bits (318), Expect = 1.0e-25 Identity = 66/105 (62.86%), Postives = 72/105 (68.57%), Query Frame = 0
BLAST of CsaV3_5G024660 vs. TAIR10
Match: AT2G44525.1 (Protein of unknown function (DUF498/DUF598)) HSP 1 Score: 109.0 bits (271), Expect = 5.3e-24 Identity = 59/111 (53.15%), Postives = 69/111 (62.16%), Query Frame = 0
BLAST of CsaV3_5G024660 vs. TAIR10
Match: AT3G60150.1 (Protein of unknown function (DUF498/DUF598)) HSP 1 Score: 104.8 bits (260), Expect = 1.0e-22 Identity = 55/96 (57.29%), Postives = 61/96 (63.54%), Query Frame = 0
BLAST of CsaV3_5G024660 vs. TrEMBL
Match: tr|A0A1S3CB84|A0A1S3CB84_CUCME (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like OS=Cucumis melo OX=3656 GN=LOC103498992 PE=4 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 1.0e-29 Identity = 73/105 (69.52%), Postives = 74/105 (70.48%), Query Frame = 0
BLAST of CsaV3_5G024660 vs. TrEMBL
Match: tr|A0A2P5C6R6|A0A2P5C6R6_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_179450 PE=4 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 6.5e-24 Identity = 63/106 (59.43%), Postives = 67/106 (63.21%), Query Frame = 0
BLAST of CsaV3_5G024660 vs. TrEMBL
Match: tr|A0A2P5EPY3|A0A2P5EPY3_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_167130 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 8.4e-24 Identity = 63/106 (59.43%), Postives = 67/106 (63.21%), Query Frame = 0
BLAST of CsaV3_5G024660 vs. TrEMBL
Match: tr|M5X2J5|M5X2J5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G110500 PE=4 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23 Identity = 63/103 (61.17%), Postives = 66/103 (64.08%), Query Frame = 0
BLAST of CsaV3_5G024660 vs. TrEMBL
Match: tr|A0A2I4EH64|A0A2I4EH64_9ROSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like OS=Juglans regia OX=51240 GN=LOC108989549 PE=4 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 1.9e-23 Identity = 63/103 (61.17%), Postives = 65/103 (63.11%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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