CsaV3_5G024550 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G024550
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionelongation factor family protein
Locationchr5 : 19453046 .. 19456535 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAACCCTTATTATTTTCCTCAATTCTCCTGCGAAGTCTCCATCTCCAATCTGATCTTCTATCTCCAATTCGACCATATTTGGGCCTCATCACCTCTTCTGCCATTTGTGCTTGTCATCACCTCCTCTGCCGGTAAGTTTCTATTCCTTCTCTCTTTGTCTCTCTCTGTGAATATTGTGTAATTCCCTTTCATAAACATTCCAACAATCCAATGTCTTTATACATGCATTTCAACTACCCCTCTTCTTCATACCCAAGTCAGAAGAAGAAAAAAAATGCTTTACGTAGCTCTCTTTGTCCTCTTCTTCAACTTTTTCCTTTTTTTTTTTTTTTTTTTAATGAGGTTAAAGTGGATTCTTAATTTTTTGAATTTTGAAAGTGGGTGTTCAAATGCTGCTTTATTATCCTAGGTACACGAAGAGGGATTATGAGAAAATGGAGGAAGGTAAGTTGGATTTGCTTCTAAAACAGTATGGACTCTGTTTTACCCTCAAGGGAAAAGGGCATTTGCTATTGGCATGTTCTTATGACCTTAACAACTTTGAATTTACCCACTATGTGTTTGATGAAATTCCTAAAAAAAAAAAAAAACTATTAAATTTTTATGAACCCAACTCTGCCCTTGGTCTTGATTGTCACTTCTTATGTTTCTATGAACGTTTCTTAGTGTGCTGTGAATGGTTTTTCAGGATTCAATATTTAACAAAAACGTCTGCATTCTAGCAAGGTTTGATTTTCTCCATTTTTCTTTGAATTGGTGCTTACCTAGTGATTTTAAGATATGATTTGGAGTAGTTGTGTAAATGACTGATGATTGGTGGAGATTTTCACTTAATACATTTAGGATTTTCGTTAGGTTTTATCTCGTTGTATTGTGGATGGAGGAAGAACACAAGCTTTCCTTGTTGGGATTACAACAAGATTTCTTGTGTGATAGGATTTTGGAATAATGCAGAAAAGTTGAAGGTATTCTCTTATTTATTTCTTGAAATTTTCTAAAAAAGAACATCATCAATCAATTCTATCTTGACACTTAAACAAGAATTTTTTTGTGAGATTATGAGAAAATATGATATTAGTTTGTGCTTGTAAGGTGTTTGACGATATGTGTCTGAAGCTTTAAAAGTCTTCTTCTTTTTCTTTTGCATTGTGTGAGTGTGTTCTATGATCTGATTGTTACACACACTGAAGCCTATTTTTAACTTAGTATATTAGACTTGTTGTAATGAAGTTTAGTTTGGCAATTGGCAATTCACCATTTAGAAAATTGTTTGTGAAAAGCCTCTTGTTCTTTCAAACCAAATACCTAAAACCATGGATATAGACAACAAACATAACCTTAAAAGGAACAAGTACCAACATCAAAAGGTGCTTAGTTTTCTTTCATAGAGAAGATTCTATCTGAAAGTTATCTTCCCTCTTTGTTTTACAATTTTTTATTGTGCTAGTTGTTGTCATTTTGCAGTTTGCACAAGTGTTTGTAGCTAAGTCATGTCAATCCATCTATATGGTGCATAATGGTTTTTTAATGTACACTTTCCACCCCTCTTTCCTCCTTTTGGATAGAAGTTGCTCATAATGTTCCATCTCGTGAATTAATTGTTTCCCTGTTTTCATAGGCCGGAAGCGTGGATGTTCAATTATATATACGTTTGTTTATGAACTATTTATGATACCCTGAAATCATTTGATTCATAGACCTATTATCTTTTATGCTATGAGTTGGTCTAAATGTACATTTTGTTGTCTCCAGTAGACTGAGGATCCACTATCTTTTCATTGTAGATAATATATGGGTCCTTGAAAATGTTCTGCTTAGTTTTCTTGATAATTTATGTTGCAGACTTATGATGGAATGATTATTGGAGAACATTCTAGGGAATTAGATCTAGATGTAAGTTGAGAACTTTATGTTTAAACTTTGGATCGAAGTTGTTTCTACTTGATTTACATGGTAAGCAATTTTATTTTTTTCCAGGTTAATCTTGTAAGAACTAAAGAAAACTTACCAATATCCGTTCTGCTTGCAAAGATGAAAATGTGAAGCTATCTCCACCTCGACTTGTATGTTATTTCTACATTGAGTTCCAATTGTATATATTTTAGTTTTATTGTGAATCCAGTATCCAAGATGTAGAATTCAACTCTAGAACGTCAGGACACAAGTAGGCTAGAAAGCTTTATTATCTTTTCCTAAGTATGATTACTCACACTAACATCTAATTTTAAACTTAAATGCAGAGATGAGTCTTGAAGAAACAATAGGATATGTTGCATCTGATGAACTTATTAAGGTAGTTTATGCTTTATTCATTCAAATTGTCTTTCTCATCTTCATTTTCTTTGGAAATTATTGTCAATGTACTCAACTCGTAATATTCTGATGCAAAAACTATAACACACTTAATTTGTTATTTTTTAATGTAACATTTAGGATCATATAATGTTTTTGCTTTGTTGTTGTATGGTTATTGATGGAAAACAATTATTTAATGAGGTTGCAACACACATGGCACGCATGCTTTCCTTCTAATGTGGCTTTTATGATTGGATCTAAGTATTAGCTTTTACAATTACTTATTAGGTTCCGACCATTTACAAATAGAAATTTATTGAACTGGCTACTTTATAAAAATCTCTATTTTGGACTTACAGTTTGTTGCATTGTGCCAAGACCATATTGAAAAAAAAAATGAAGCAAAATAGAAAGGAAAAGAAGACAATCCCAGTAGTTGTTCTTAGCTTAGACCAAACAGAAGAGAAATGATCAGAGCACAAAGAAAGAAAGAACTTGCATTTCAATGGAGAATAGCATGAAAAACAAGAACCCGGTTGGAAATAGAAGAAAATAAAACTTCAAATAATAATTAACGACAGAAGAGAACTTTCATATATATATATTTGCTTTTACGCTTTCGATGTGAGACTGTTTGAATTTAGTTCAGATGTTGAAATTCTTGTATCCTGAGTATGTTCTTTTGATTGTAGTGTCAATCCACGGTATAAAGCTTCAAATAATGATACAAGTAGTAAACTTTGTTTTATTGTCGTCGTGGTTGCTCCTTTCGCAGGGTTGTGAAAGGGAGAGTACTGGGCCTCTTGACTTGGAAATTAATTTATTGTTTGATATAGTGTATCGCATACAAATTTTGTTCTCGATAGTGTACGTTTTTATTTTCCTTCTATGGATTCTTTTCATGTTTGAACATTTGATATATTTGTTCTACAGGATGCAGAAGCATATGCTTACCTTTTAAAATGAAGGATTGCAACAATTTTAGAGGAAGGAGGAGGCCTGAGGAAATTTACCAAATACTTGAGTGATAATTCTGGTGCTAAAGGATATTGCATGTATGCCTCTTTAAAGACCTTGTAAATTCCATATTTGTAAATTGTTTAAACTTGATTGAAAATGTACGAATATTACAAAGTGTATTATAGCATATATATGTGTATATATATATATATATTAAAGTATCGACCATTTGTT

mRNA sequence

ATGATTGGTGGAGATTTTCACTTAATACATTTAGGATTTTCGTTAGGTTTTATCTCGTTGTATTGTGGATGGAGGAAGAACACAAGCTTTCCTTGTTGGGATTACAACAAGATTTCTTGTGTGATAGGATTTTGGAATAATGCAGAAAAGTTGAAGACTTATGATGGAATGATTATTGGAGAACATTCTAGGGAATTAGATCTAGATGTTAATCTTGTAAGAACTAAAGAAAACTTACCAATATCCGTTCTGCTTGCAAAGATGAAAATGTGA

Coding sequence (CDS)

ATGATTGGTGGAGATTTTCACTTAATACATTTAGGATTTTCGTTAGGTTTTATCTCGTTGTATTGTGGATGGAGGAAGAACACAAGCTTTCCTTGTTGGGATTACAACAAGATTTCTTGTGTGATAGGATTTTGGAATAATGCAGAAAAGTTGAAGACTTATGATGGAATGATTATTGGAGAACATTCTAGGGAATTAGATCTAGATGTTAATCTTGTAAGAACTAAAGAAAACTTACCAATATCCGTTCTGCTTGCAAAGATGAAAATGTGA

Protein sequence

MIGGDFHLIHLGFSLGFISLYCGWRKNTSFPCWDYNKISCVIGFWNNAEKLKTYDGMIIGEHSRELDLDVNLVRTKENLPISVLLAKMKM
Homology
[Close]
BLAST of CsaV3_5G024550 vs. NCBI nr
Match: KGN51094.1 (hypothetical protein Csa_5G440080 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 3.6e-35
Identity = 75/87 (86.21%), Postives = 77/87 (88.51%), Query Frame = 0 

Query: 5   DFHLIHLGFSL-GFISLYCGWRKNTSFPCWDYNKISCVIGFWNNAEKLKTYDGMIIGEHS 64
           DF    L + L  FISLYCGWRKNTSFPCWDYNKISCVIGFWNNAEKLKTYD MIIGEHS
Sbjct: 44  DFLHFSLNWCLPSFISLYCGWRKNTSFPCWDYNKISCVIGFWNNAEKLKTYDEMIIGEHS 103

Query: 65  RELDLDVNLVRTKENLPISVLLAKMKM 91
           RELDLD N+VRTKENLPISVLLAKMKM
Sbjct: 104 RELDLDANIVRTKENLPISVLLAKMKM 130

[Close]
BLAST of CsaV3_5G024550 vs. TAIR10
Match: AT2G31060.3 (elongation factor family protein)

HSP 1 Score: 45.4 bits (106), Expect = 2.1e-05
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 0 

Query: 51  LKTYDGMIIGEHSRELDLDVNLVRTKE 78
           L +YDGMIIGEHSRE DLD+N V+ KE
Sbjct: 581 LDSYDGMIIGEHSRETDLDLNPVKAKE 607

[Close]
BLAST of CsaV3_5G024550 vs. TrEMBL
Match: tr|A0A0A0KQE9|A0A0A0KQE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G440080 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.4e-35
Identity = 75/87 (86.21%), Postives = 77/87 (88.51%), Query Frame = 0 

Query: 5   DFHLIHLGFSL-GFISLYCGWRKNTSFPCWDYNKISCVIGFWNNAEKLKTYDGMIIGEHS 64
           DF    L + L  FISLYCGWRKNTSFPCWDYNKISCVIGFWNNAEKLKTYD MIIGEHS
Sbjct: 44  DFLHFSLNWCLPSFISLYCGWRKNTSFPCWDYNKISCVIGFWNNAEKLKTYDEMIIGEHS 103

Query: 65  RELDLDVNLVRTKENLPISVLLAKMKM 91
           RELDLD N+VRTKENLPISVLLAKMKM
Sbjct: 104 RELDLDANIVRTKENLPISVLLAKMKM 130

The following BLAST results are available for this feature:
BLAST of CsaV3_5G024550 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51094.13.6e-3586.21hypothetical protein Csa_5G440080 [Cucumis sativus][more]
BLAST of CsaV3_5G024550 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G31060.32.1e-0574.07elongation factor family protein[more]
BLAST of CsaV3_5G024550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G024550 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KQE9|A0A0A0KQE9_CUCSA2.4e-3586.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G440080 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G024550.1CsaV3_5G024550.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.40.50.250coord: 43..83
e-value: 2.5E-7
score: 32.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G024550Silver-seed gourdcarcucB0514
CsaV3_5G024550Silver-seed gourdcarcucB0867
CsaV3_5G024550Cucumber (Gy14) v2cgybcucB232
CsaV3_5G024550Cucurbita maxima (Rimu)cmacucB0357
CsaV3_5G024550Cucurbita maxima (Rimu)cmacucB0865
CsaV3_5G024550Cucurbita moschata (Rifu)cmocucB0352
CsaV3_5G024550Cucurbita moschata (Rifu)cmocucB0852
CsaV3_5G024550Cucurbita pepo (Zucchini)cpecucB0214
CsaV3_5G024550Cucurbita pepo (Zucchini)cpecucB0523
CsaV3_5G024550Wild cucumber (PI 183967)cpicucB284
CsaV3_5G024550Bottle gourd (USVL1VR-Ls)cuclsiB347
CsaV3_5G024550Melon (DHL92) v3.5.1cucmeB362
CsaV3_5G024550Melon (DHL92) v3.6.1cucmedB354
CsaV3_5G024550Watermelon (Charleston Gray)cucwcgB387
CsaV3_5G024550Watermelon (97103) v1cucwmB435
CsaV3_5G024550Watermelon (97103) v2cucwmbB353
CsaV3_5G024550Wax gourdcucwgoB465