CsaV3_5G024410 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G024410
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionprotease Do-like 8, chloroplastic
Locationchr5 : 19239651 .. 19242166 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATGGAGAGGAGGTGGTGGAATGTGGAGGAGGAAGAGATGAGGATGATGATGTGGGAGAGGGAGTTGGGGCGGCAGTGGCGGGGACGAAGAGCGAGGAAGAAAGGGTGGGAAGTGGAGGAGTTCCATGACTTGGAGACGGAGGAGAAAAGAAGAAGAGGTTTGGTCATGGGGAGTTTTGTGAGGATTTTGGAAGATTATGATGTATTTCTTCAGGCAGTCGAGGAAGAAGAAGATTATGATCATCAAGAAAAATGGAGGGACATTACTATTATTTTTTGTGGAAATTTTCTTGTGTTAGTTTTTTTTATATGTGGGTTGATTTTTGTTGTGTTTGATGATGATCACAATGTTGAAACGCCAACTCTAACAAAAAAAAAAGTGCATAGATGACAAGTTGTGTTTCCTGTAAATTGTACTTCAACTTATTGTTAGATGATATATATGTCTAAACAAGGTGAATAATTCTCACCTTGATAAACCTTACATTAATTTATATAATATTGTGTTTCATCATTACAATGAATTACTTTGATTAGCGAGTTTGTAGTCGTTGAACAAAATAATACCATTGAAAATGTTCATTATTATGCTAATGTTTAGCTACCCACACATAAATAAATTTATCATGTAATTTAGTTACTATCACTGTTATATTATTTTGTGTAATATATAATGTAATTTTGCAAAGACTTTTGTGTTTAGATGCAAATAAATTTTCACATTAGCTAGGGAAATAAATAGAGATTTATGGTGTACAAGTGAGCACAATGATAACTATTGGTATAAAAATGTTTTTGGGTGGTAGTAAAGCCCTACAATTGTGGGAACATTTTGAAGGTTGATAGTCCTTACCAATTTATGTTAAAATCATAGTCTAAACTAAGGTGTGTATGTTGGTGATATCCTCAAAACTAAAGTTGTGTGGATTTGGATATGGAGAGCATGTGTATATATTTATTGAGGGGAGGAAACTAAGTGTGTGTAATATTGGTTCATTCGCAATATGATATTTGGTTGTGCATTACTTGGCTTTGCTCTAGGACTTGATTAAAAAAAAAAAAAAACTTGAGTAGGCAATCAGAGTTTATGGTTGAGAAGGGATTCACAATGGGTACTTCATTCAATGAAAAAATTGTTAGCTGCAAACAAAGTCTAACAATGGTTAGAAAATATATGAAAAGTTGACTAACCAAATAGATCATACAGCGAAATTGATAGGAGAGTACATTTTTATTTGAGGGAAGAAGATTAAGGAGTGCGATAGTAGGTTAATGTCTACTATATTCCACAATGTATAAGTACAGACAATTAGCCCTTTTACGTCATTTATAAAACAAAATCTCGAGTTTGTTTAAAGCGGTCAATGTCACATAATTGTAGAGATATATATAGTGTTTCATTATATTTAGATAATCATGTATGACATTTTACATTTTCTTAAAAAAAATTGAATGTAAGTTGATATATATGCTATGCTACTTCAAGAAAAATGACATTTTATAACAGTTCAATACAACCAAAATTAAAAGTAGCTAGTGAAGTAAAAACGGTTGTAAAATGTGAAAATTCATGTTTTTGACGGAAAAAGCGTTGTTTTCAAATTCTACCTTTTCGTGACATCTATTTGTTGTTTAAAACATTAAATAATTTATTTATTAAAATAAATCTTAATTTTATATCCCAAAAAATGTGAAAGTCACACCCTTTCTCTAATTCGTCTTCCTCTTCGAACCTCACTCCACCTACCAGACCATCAGACGAACAACCAATGTCGACCTCTCCAAACGGCTACTCTTGACTTGACTCCGGAACTCTTCCACAAGGGATGAGGATAGACGCTTCCTATTTGGTCTCTTGATACCCGACTCTGCTGAAACTCCCTACGGTGGAGATCCCATTCTTTCTACTCGGCCTATTCACACTACTAGGGGGGTCTTCATGAGACTGGGCGAGAGCCTAAAGAACTCTTGTATCTGAGTGATTGGCGGACGATTTCAGTTATGCTGCTGAGCCAGCAACGGGGCTCCTTTCTATTTCCGACTATCTCAAATGTAGTCTGTCACCGCCAATCGTCACCCACCGTCCATCTCCGAAACTCCTCATCCGCTGTCGGTGACATTTTCTCAAGTTATTCTTCTTCTTCTTCTTCTTCCTTCCCATTTCTTTCTTTTGGTTTTCTGTCTCTGTATTAAAAATTATTTGCTGAGATGAGACACTCTCTTTTACTTGTCAGACGCTATTCATCTTCTTCTCAACCTTCTATTTCAGATCCCAGCACTTTAGAATCCATTTTCATTCAAAGGTTGTTTCTCTCCTTTTTTGTTTTTCTGCATTGTTTGATCAATTTTTTGCTTTTAGCCATTGATATGCTTTTAGGTGTTTCAGCTTCAAGTTTTGTTGTTGGCTGTTGTTTTGAATTTTGTGTGAAGTTCTCTAATTAATTTAGCTGATTATTATTCAGGAGGGCTGATGATGACTCTGGGCATCTTGGTTCTGTAGTGAGCAGATAA

mRNA sequence

ATGGGGATGGAGAGGAGGTGGTGGAATGTGGAGGAGGAAGAGATGAGGATGATGATGTGGGAGAGGGAGTTGGGGCGGCAGTGGCGGGGACGAAGAGCGAGGAAGAAAGGGTGGGAAGTGGAGGAGTTCCATGACTTGGAGACGGAGGAGAAAAGAAGAAGAGGTTTGGTCATGGGGAGTTTTGTGAGGATTTTGGAAGATTATGATGTATTTCTTCAGGCAGTCGAGGAAGAAGAAGATTATGATCATCAAGAAAAATGGAGGGACATTACTATTATTTTTTGTGGAAATTTTCTTGTTTATGCTGCTGAGCCAGCAACGGGGCTCCTTTCTATTTCCGACTATCTCAAATGTAGTCTGTCACCGCCAATCGTCACCCACCGTCCATCTCCGAAACTCCTCATCCGCTGTCGACGCTATTCATCTTCTTCTCAACCTTCTATTTCAGATCCCAGCACTTTAGAATCCATTTTCATTCAAAGGAGGGCTGATGATGACTCTGGGCATCTTGGTTCTGTAGTGAGCAGATAA

Coding sequence (CDS)

ATGGGGATGGAGAGGAGGTGGTGGAATGTGGAGGAGGAAGAGATGAGGATGATGATGTGGGAGAGGGAGTTGGGGCGGCAGTGGCGGGGACGAAGAGCGAGGAAGAAAGGGTGGGAAGTGGAGGAGTTCCATGACTTGGAGACGGAGGAGAAAAGAAGAAGAGGTTTGGTCATGGGGAGTTTTGTGAGGATTTTGGAAGATTATGATGTATTTCTTCAGGCAGTCGAGGAAGAAGAAGATTATGATCATCAAGAAAAATGGAGGGACATTACTATTATTTTTTGTGGAAATTTTCTTGTTTATGCTGCTGAGCCAGCAACGGGGCTCCTTTCTATTTCCGACTATCTCAAATGTAGTCTGTCACCGCCAATCGTCACCCACCGTCCATCTCCGAAACTCCTCATCCGCTGTCGACGCTATTCATCTTCTTCTCAACCTTCTATTTCAGATCCCAGCACTTTAGAATCCATTTTCATTCAAAGGAGGGCTGATGATGACTCTGGGCATCTTGGTTCTGTAGTGAGCAGATAA

Protein sequence

MGMERRWWNVEEEEMRMMMWERELGRQWRGRRARKKGWEVEEFHDLETEEKRRRGLVMGSFVRILEDYDVFLQAVEEEEDYDHQEKWRDITIIFCGNFLVYAAEPATGLLSISDYLKCSLSPPIVTHRPSPKLLIRCRRYSSSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR
Homology
[Close]
BLAST of CsaV3_5G024410 vs. NCBI nr
Match: XP_008459309.1 (PREDICTED: protease Do-like 8, chloroplastic [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 5.2e-06
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 142 SSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 177
           SSSQPS S+PST ESIFIQRRADDDSG LGSVVSR
Sbjct: 41  SSSQPSTSNPSTSESIFIQRRADDDSGDLGSVVSR 75

[Close]
BLAST of CsaV3_5G024410 vs. NCBI nr
Match: KGN51084.1 (hypothetical protein Csa_5G431520 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-05
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 149 SDPSTLESIFIQRRADDDSGHLGSVVSR 177
           SDPSTLESIFIQRRADDDSGHLGSVVSR
Sbjct: 71  SDPSTLESIFIQRRADDDSGHLGSVVSR 98

[Close]
BLAST of CsaV3_5G024410 vs. NCBI nr
Match: XP_004148708.1 (PREDICTED: protease Do-like 8, chloroplastic [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 6.4e-04
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 142 SSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 177
           SSSQPS S   T ESIFIQRRADDDSG LGSVV+R
Sbjct: 41  SSSQPSTSXXXTSESIFIQRRADDDSGDLGSVVNR 75

[Close]
BLAST of CsaV3_5G024410 vs. TrEMBL
Match: tr|A0A1S3C9Y8|A0A1S3C9Y8_CUCME (protease Do-like 8, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498478 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.5e-06
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 142 SSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 177
           SSSQPS S+PST ESIFIQRRADDDSG LGSVVSR
Sbjct: 41  SSSQPSTSNPSTSESIFIQRRADDDSGDLGSVVSR 75

[Close]
BLAST of CsaV3_5G024410 vs. TrEMBL
Match: tr|A0A0A0KQE1|A0A0A0KQE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G431520 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-05
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 149 SDPSTLESIFIQRRADDDSGHLGSVVSR 177
           SDPSTLESIFIQRRADDDSGHLGSVVSR
Sbjct: 71  SDPSTLESIFIQRRADDDSGHLGSVVSR 98

The following BLAST results are available for this feature:
BLAST of CsaV3_5G024410 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008459309.15.2e-0688.57PREDICTED: protease Do-like 8, chloroplastic [Cucumis melo][more]
KGN51084.12.6e-05100.00hypothetical protein Csa_5G431520 [Cucumis sativus][more]
XP_004148708.16.4e-0480.00PREDICTED: protease Do-like 8, chloroplastic [Cucumis sativus][more]
BLAST of CsaV3_5G024410 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G024410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G024410 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C9Y8|A0A1S3C9Y8_CUCME3.5e-0688.57protease Do-like 8, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498478 PE=4 S... [more]
tr|A0A0A0KQE1|A0A0A0KQE1_CUCSA1.7e-05100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G431520 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G024410.1CsaV3_5G024410.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G024410CSPI05G15380Wild cucumber (PI 183967)cpicucB284
CsaV3_5G024410CsGy5G015190Cucumber (Gy14) v2cgybcucB232
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G024410Silver-seed gourdcarcucB0514
CsaV3_5G024410Silver-seed gourdcarcucB0867
CsaV3_5G024410Cucurbita maxima (Rimu)cmacucB0357
CsaV3_5G024410Cucurbita maxima (Rimu)cmacucB0865
CsaV3_5G024410Cucurbita moschata (Rifu)cmocucB0352
CsaV3_5G024410Cucurbita moschata (Rifu)cmocucB0852
CsaV3_5G024410Cucurbita pepo (Zucchini)cpecucB0214
CsaV3_5G024410Cucurbita pepo (Zucchini)cpecucB0523
CsaV3_5G024410Bottle gourd (USVL1VR-Ls)cuclsiB347
CsaV3_5G024410Melon (DHL92) v3.5.1cucmeB362
CsaV3_5G024410Melon (DHL92) v3.6.1cucmedB354
CsaV3_5G024410Watermelon (Charleston Gray)cucwcgB387
CsaV3_5G024410Watermelon (97103) v1cucwmB435
CsaV3_5G024410Watermelon (97103) v2cucwmbB353