CsaV3_5G023860 (gene) Cucumber (Chinese Long) v3

NameCsaV3_5G023860
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 18327188 .. 18327397 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTACCTGGACTAAGCTGGGGATCTGCGGGAGCTTGGGTTGGAAGAAAGAAGAGAAAGAGGGAATCTTAAGTGAAAATCCGGCAGAGAAGAAAGAGAAAAATGAGGAAGGTTGAAAGAAATTGGGGTGTCAGTGTTTGGTAGGAGAAGGAAAATGGAGAAAGGCGAAAGGGATGGAGATGGCTCCGGCGACGGCGGAGGTGGCGTAG

mRNA sequence

ATGGGTACCTGGACTAAGCTGGGGATCTGCGGGAGCTTGGGTTGGAAGAAAGAAGAGAAAGAGGGAATCTTAAGTGAAAATCCGGCAGAGAAGAAAGAGAAAAATGAGGAAGGAGAAGGAAAATGGAGAAAGGCGAAAGGGATGGAGATGGCTCCGGCGACGGCGGAGGTGGCGTAG

Coding sequence (CDS)

ATGGGTACCTGGACTAAGCTGGGGATCTGCGGGAGCTTGGGTTGGAAGAAAGAAGAGAAAGAGGGAATCTTAAGTGAAAATCCGGCAGAGAAGAAAGAGAAAAATGAGGAAGGAGAAGGAAAATGGAGAAAGGCGAAAGGGATGGAGATGGCTCCGGCGACGGCGGAGGTGGCGTAG

Protein sequence

MGTWTKLGICGSLGWKKEEKEGILSENPAEKKEKNEEGEGKWRKAKGMEMAPATAEVA
BLAST of CsaV3_5G023860 vs. NCBI nr
Match: KGN51026.1 (hypothetical protein Csa_5G409680 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 5.4e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  MGTWTKLGICGSLGWKKEEKEGILSENPAEKKEKNEEGEGKWRKAKGMEMAPATAEVA 59
          MGTWTKLGICGSLGWKKEEKEGILSENPAEKKEKNEEGEGKWRKAKGMEMAPATAEVA
Sbjct: 1  MGTWTKLGICGSLGWKKEEKEGILSENPAEKKEKNEEGEGKWRKAKGMEMAPATAEVA 58

BLAST of CsaV3_5G023860 vs. TrEMBL
Match: tr|A0A0A0KTL5|A0A0A0KTL5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G409680 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.6e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  MGTWTKLGICGSLGWKKEEKEGILSENPAEKKEKNEEGEGKWRKAKGMEMAPATAEVA 59
          MGTWTKLGICGSLGWKKEEKEGILSENPAEKKEKNEEGEGKWRKAKGMEMAPATAEVA
Sbjct: 1  MGTWTKLGICGSLGWKKEEKEGILSENPAEKKEKNEEGEGKWRKAKGMEMAPATAEVA 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN51026.15.4e-24100.00hypothetical protein Csa_5G409680 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KTL5|A0A0A0KTL5_CUCSA3.6e-24100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G409680 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G023860.1CsaV3_5G023860.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..46

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None