CsaV3_5G023690 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G023690
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 18116376 .. 18116552 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTGGCTATCGATGGTAGCATGAGACTAGCTAGTGGAGGTCATAAGAAAAATGGTGGTCAAATGGTTGATGATGGTAGTATGAGATTGGCCGGTGGAGGTCATGAAAAAATAGAGGTCAAAGATTCGTCGACATGGCAGTTGTTGGAAAATAGTCAACAGAGCTCATCGTAA

mRNA sequence

ATGGCAGTGGCTATCGATGGTAGCATGAGACTAGCTAGTGGAGGTCATAAGAAAAATGGTGGTCAAATGGTTGATGATGGTAGTATGAGATTGGCCGGTGGAGGTCATGAAAAAATAGAGGTCAAAGATTCGTCGACATGGCAGTTGTTGGAAAATAGTCAACAGAGCTCATCGTAA

Coding sequence (CDS)

ATGGCAGTGGCTATCGATGGTAGCATGAGACTAGCTAGTGGAGGTCATAAGAAAAATGGTGGTCAAATGGTTGATGATGGTAGTATGAGATTGGCCGGTGGAGGTCATGAAAAAATAGAGGTCAAAGATTCGTCGACATGGCAGTTGTTGGAAAATAGTCAACAGAGCTCATCGTAA

Protein sequence

MAVAIDGSMRLASGGHKKNGGQMVDDGSMRLAGGGHEKIEVKDSSTWQLLENSQQSSS

Homology

[Close]

BLAST of CsaV3_5G023690 vs. NCBI nr
Match: KGN51009.1 (hypothetical protein Csa_5G406540 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 4.3e-13
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MAVAIDGSMRLASGGHKKNGGQMVXXXXXXXXXXXXXXIEVKDSSTWQLLENSQQSSS 59
          MAVAIDGSMRLASGGHKKNGGQMVXXXXXXXXXXXXXXIEVKDSSTWQLLENSQQSSS
Sbjct: 1  MAVAIDGSMRLASGGHKKNGGQMVXXXXXXXXXXXXXXIEVKDSSTWQLLENSQQSSS 58

[Close]

BLAST of CsaV3_5G023690 vs. TrEMBL
Match: tr|A0A0A0KQ90|A0A0A0KQ90_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G406540 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MAVAIDGSMRLASGGHKKNGGQMVXXXXXXXXXXXXXXIEVKDSSTWQLLENSQQSSS 59
          MAVAIDGSMRLASGGHKKNGGQMVXXXXXXXXXXXXXXIEVKDSSTWQLLENSQQSSS
Sbjct: 1  MAVAIDGSMRLASGGHKKNGGQMVXXXXXXXXXXXXXXIEVKDSSTWQLLENSQQSSS 58

The following BLAST results are available for this feature:

BLAST of CsaV3_5G023690 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51009.1	4.3e-13	100.00	hypothetical protein Csa_5G406540 [Cucumis sativus]	[more]

BLAST of CsaV3_5G023690 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G023690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G023690 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KQ90\|A0A0A0KQ90_CUCSA	2.8e-13	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G406540 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G023690.1	CsaV3_5G023690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G023690	CSPI05G14590	Wild cucumber (PI 183967)	cpicucB284

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G023690	Silver-seed gourd	carcucB0564
CsaV3_5G023690	Silver-seed gourd	carcucB0869
CsaV3_5G023690	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G023690	Cucumber (Gy14) v1	cgycucB010
CsaV3_5G023690	Cucurbita maxima (Rimu)	cmacucB0343
CsaV3_5G023690	Cucurbita maxima (Rimu)	cmacucB0887
CsaV3_5G023690	Cucurbita moschata (Rifu)	cmocucB0337
CsaV3_5G023690	Cucurbita moschata (Rifu)	cmocucB0876
CsaV3_5G023690	Cucurbita pepo (Zucchini)	cpecucB0225
CsaV3_5G023690	Cucurbita pepo (Zucchini)	cpecucB0545
CsaV3_5G023690	Bottle gourd (USVL1VR-Ls)	cuclsiB353
CsaV3_5G023690	Melon (DHL92) v3.5.1	cucmeB351
CsaV3_5G023690	Melon (DHL92) v3.6.1	cucmedB343
CsaV3_5G023690	Watermelon (Charleston Gray)	cucwcgB405
CsaV3_5G023690	Watermelon (97103) v1	cucwmB406
CsaV3_5G023690	Watermelon (97103) v2	cucwmbB386
CsaV3_5G023690	Wax gourd	cucwgoB463