CsaV3_5G023670 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G023670
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Pol polyprotein
Location	chr5 : 18086424 .. 18086841 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAAGACACCGATTGAAATGTCCCCTTACGCAATAATCTTTGGGAAAGCATGCCACTTACCATTGGAGTTGGAGCACAAGGCATCATGGGTATGCAAAAAGTTGAACTTTGATAAGAATGCCACATGAGAAGCAAGATTACTTCAATTTCTTGAGCTTCAAGATTGGCATTCTCAAGCCTATGAGAATGCCAAAAATTTACAAGCAAAGGACAAAGGCATGGCATGATAACTGCATCCGTAAACGTGAATTTAGCATTGGTCAGAAAGTGTTATTATTCAATTCACGTTTGCGTTGGTTTGGGCCATTTTTGGTCAAGGAAGTTTTTCCGCATGGTGCAGTAGAGATCACATCGACAGATGGAACAAACACGTTTGAGGTAAACGGACAGAGGCTTAAGGCGTATATGGACTAA

mRNA sequence

ATGTACAAGACACCGATTGAAATGTCCCCTTACGCAATAATCTTTGGGAAAGCATGCCACTTACCATTGGAGTTGGAGCACAAGGCATCATGGATTGGCATTCTCAAGCCTATGAGAATGCCAAAAATTTACAAGCAAAGGACAAAGGCATGGCATGATAACTGCATCCGTAAACGTGAATTTAGCATTGGTCAGAAAGTGTTATTATTCAATTCACGTTTGCGTTGGTTTGGGCCATTTTTGGTCAAGGAAGTTTTTCCGCATGGTGCAGTAGAGATCACATCGACAGATGGAACAAACACGTTTGAGGTAAACGGACAGAGGCTTAAGGCGTATATGGACTAA

Coding sequence (CDS)

ATGTACAAGACACCGATTGAAATGTCCCCTTACGCAATAATCTTTGGGAAAGCATGCCACTTACCATTGGAGTTGGAGCACAAGGCATCATGGATTGGCATTCTCAAGCCTATGAGAATGCCAAAAATTTACAAGCAAAGGACAAAGGCATGGCATGATAACTGCATCCGTAAACGTGAATTTAGCATTGGTCAGAAAGTGTTATTATTCAATTCACGTTTGCGTTGGTTTGGGCCATTTTTGGTCAAGGAAGTTTTTCCGCATGGTGCAGTAGAGATCACATCGACAGATGGAACAAACACGTTTGAGGTAAACGGACAGAGGCTTAAGGCGTATATGGACTAA

Protein sequence

MYKTPIEMSPYAIIFGKACHLPLELEHKASWIGILKPMRMPKIYKQRTKAWHDNCIRKREFSIGQKVLLFNSRLRWFGPFLVKEVFPHGAVEITSTDGTNTFEVNGQRLKAYMD

Homology

[Close]

BLAST of CsaV3_5G023670 vs. NCBI nr
Match: XP_021824010.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC110765232 [Prunus avium])

HSP 1 Score: 143.3 bits (360), Expect = 5.2e-31
Identity = 72/141 (51.06%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 2    YKTPIEMSPYAIIFGKACHLPLELEHKASW-------------------IGILKPMRMPK 61
            YKTPI MSPY ++FGKACHLP+ELEH+A W                   I  L+ +R  K
Sbjct: 1656 YKTPIGMSPYRLVFGKACHLPMELEHRAYWAIKKFNFDLKEAGNVRKLQINELEELRXAK 1715

Query: 62   IYKQRTKAWHDNCIRKREFSIGQKVLLFNSRL---------RWFGPFLVKEVFPHGAVEI 115
            IYK+RTK +HD  I ++EF  G KVLL++SRL         RW GPF V +VFPHGAVEI
Sbjct: 1716 IYKERTKRYHDKAILRKEFKPGMKVLLYDSRLRLFPGKLKSRWLGPFKVLQVFPHGAVEI 1775

[Close]

BLAST of CsaV3_5G023670 vs. NCBI nr
Match: XP_020424473.1 (uncharacterized protein LOC109950325 [Prunus persica])

HSP 1 Score: 140.6 bits (353), Expect = 3.4e-30
Identity = 72/146 (49.32%), Postives = 94/146 (64.38%), Query Frame = 0


Query: 2   YKTPIEMSPYAIIFGKACHLPLELEHKASW-------------------IGILKPMRM-- 61
           YKTPI MSP+ +++GKACHLP+ELEHKA W                   +  L+ +R   
Sbjct: 110 YKTPIGMSPFRLVYGKACHLPMELEHKAYWAIKELNFAYDSAGEKRKLQLNELEEIRQGA 169

Query: 62  ---PKIYKQRTKAWHDNCIRKREFSIGQKVLLFNSRL---------RWFGPFLVKEVFPH 115
               +IYK+RTKA+HD+ I ++EF  GQKVLLF+SRL         RW GP+LV +VFPH
Sbjct: 170 YDSSRIYKERTKAFHDSQILRKEFQPGQKVLLFSSRLKLFPGKLKSRWTGPYLVTQVFPH 229

[Close]

BLAST of CsaV3_5G023670 vs. NCBI nr
Match: PNX62500.1 (hypothetical protein L195_g053015, partial [Trifolium pratense])

HSP 1 Score: 139.0 bits (349), Expect = 9.8e-30
Identity = 71/144 (49.31%), Postives = 90/144 (62.50%), Query Frame = 0


Query: 2   YKTPIEMSPYAIIFGKACHLPLELEHKASW-------------------IGILKPMRM-- 61
           +KTPI MSPY ++FGK+CHLP+ELEHKA W                   +  L  +R+  
Sbjct: 4   FKTPIGMSPYRLVFGKSCHLPVELEHKALWALKFLNFDAQLTGENRLLQLDELDELRLGA 63

Query: 62  ---PKIYKQRTKAWHDNCIRKREFSIGQKVLLFNSRL---------RWFGPFLVKEVFPH 113
               K+YK+RTK WHD  I+ REF IG KVL++NSRL         RWFGP+ V +VFPH
Sbjct: 64  YENAKLYKERTKKWHDKRIQLREFQIGDKVLIYNSRLRLFPGKLRSRWFGPYTVTQVFPH 123

[Close]

BLAST of CsaV3_5G023670 vs. NCBI nr
Match: XP_020409874.1 (uncharacterized protein LOC109946451 [Prunus persica])

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 71/146 (48.63%), Postives = 94/146 (64.38%), Query Frame = 0


Query: 2   YKTPIEMSPYAIIFGKACHLPLELEHKASW-------------------IGILKPMRM-- 61
           YKTPI MSP+ +++GKACHLP+ELEHKA W                   +  L+ +R   
Sbjct: 4   YKTPIGMSPFRLVYGKACHLPMELEHKAYWAIKELNFAYDSAGEKRKLQLNELEEIRQGA 63

Query: 62  ---PKIYKQRTKAWHDNCIRKREFSIGQKVLLFNSRL---------RWFGPFLVKEVFPH 115
               +IYK+RTKA+HD+ I ++EF  GQKVLLF+ RL         RW GP+LV +VFPH
Sbjct: 64  YDSSRIYKERTKAFHDSQILRKEFQPGQKVLLFSLRLKLFPGKLKSRWTGPYLVTQVFPH 123

[Close]

BLAST of CsaV3_5G023670 vs. NCBI nr
Match: XP_022866222.1 (uncharacterized protein LOC111386025 [Olea europaea var. sylvestris])

HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29
Identity = 67/144 (46.53%), Postives = 86/144 (59.72%), Query Frame = 0


Query: 2   YKTPIEMSPYAIIFGKACHLPLELEHKASWIGILKPMRM--------------------- 61
           +KTPI+MSPY ++FGKACHL +ELEHKA W+  L    M                     
Sbjct: 103 FKTPIDMSPYRLVFGKACHLLVELEHKACWVTHLLNFNMRAVGEKRVLQFHELYEFRLDS 162

Query: 62  ---PKIYKQRTKAWHDNCIRKREFSIGQKVLLFNSRL---------RWFGPFLVKEVFPH 113
               KIYK++TK WHD  I+++EF +GQ+VL+FNSRL         RW GPF +  VFPH
Sbjct: 163 YENAKIYKEKTKRWHDRHIKEKEFEVGQQVLMFNSRLKPFLGKLKSRWSGPFTIVAVFPH 222

[Close]

BLAST of CsaV3_5G023670 vs. TrEMBL
Match: tr|A0A2K3K887|A0A2K3K887_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g053015 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.5e-30
Identity = 71/144 (49.31%), Postives = 90/144 (62.50%), Query Frame = 0


Query: 2   YKTPIEMSPYAIIFGKACHLPLELEHKASW-------------------IGILKPMRM-- 61
           +KTPI MSPY ++FGK+CHLP+ELEHKA W                   +  L  +R+  
Sbjct: 4   FKTPIGMSPYRLVFGKSCHLPVELEHKALWALKFLNFDAQLTGENRLLQLDELDELRLGA 63

Query: 62  ---PKIYKQRTKAWHDNCIRKREFSIGQKVLLFNSRL---------RWFGPFLVKEVFPH 113
               K+YK+RTK WHD  I+ REF IG KVL++NSRL         RWFGP+ V +VFPH
Sbjct: 64  YENAKLYKERTKKWHDKRIQLREFQIGDKVLIYNSRLRLFPGKLRSRWFGPYTVTQVFPH 123

[Close]

BLAST of CsaV3_5G023670 vs. TrEMBL
Match: tr|A0A1S3CM09|A0A1S3CM09_CUCME (uncharacterized protein LOC103502497 OS=Cucumis melo OX=3656 GN=LOC103502497 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.5e-29
Identity = 72/145 (49.66%), Postives = 86/145 (59.31%), Query Frame = 0


Query: 2   YKTPIEMSPYAIIFGKACHLPLELEHKASW--------------IGILK----------P 61
           YKTPI MSPY ++F KA HLPLE EHK  W                +LK           
Sbjct: 117 YKTPIRMSPYTLVFKKAWHLPLEFEHKELWSCKKLNFDHNTAGEARLLKLNELQEWCSQA 176

Query: 62  MRMPKIYKQRTKAWHDNCIRKREFSIGQKVLLFNSR---------LRWFGPFLVKEVFPH 114
            +  KIYK++TKAWHD+ I + +  +GQKVLLFNSR         LRW  PF VK++F H
Sbjct: 177 YKNAKIYKEKTKAWHDSRINRYKLGVGQKVLLFNSRLQLFLDKLYLRWSRPFFVKQIFLH 236

[Close]

BLAST of CsaV3_5G023670 vs. TrEMBL
Match: tr|A0A2K3NJZ5|A0A2K3NJZ5_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g026684 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 70/144 (48.61%), Postives = 87/144 (60.42%), Query Frame = 0


Query: 2   YKTPIEMSPYAIIFGKACHLPLELEHKASW-----------IGILKPMRM---------- 61
           +KTPI MSP+ I++GK+CHLPLELEHKA W            G  + +++          
Sbjct: 338 FKTPIGMSPFQIVYGKSCHLPLELEHKALWATKFLNFDLSKAGESRILQLHELDEFRNFA 397

Query: 62  ---PKIYKQRTKAWHDNCIRKREFSIGQKVLLFNSRL---------RWFGPFLVKEVFPH 113
               KI+K++TK WHD  I+ REF  GQ VLLFNSRL         RW GPF +K+VFPH
Sbjct: 398 YENAKIFKEKTKKWHDKKIQNREFREGQLVLLFNSRLKLFPGKLKSRWSGPFKIKKVFPH 457

[Close]

BLAST of CsaV3_5G023670 vs. TrEMBL
Match: tr|A0A1B5Z879|A0A1B5Z879_TRISU (Uncharacterized protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_417510 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 4.7e-28
Identity = 69/144 (47.92%), Postives = 86/144 (59.72%), Query Frame = 0


Query: 2    YKTPIEMSPYAIIFGKACHLPLELEHKASW-----------IGILKPMRM---------- 61
            +KTPI MSP+ I++GKACHLPLELEHKA W            G  + +++          
Sbjct: 1460 FKTPIGMSPFQIVYGKACHLPLELEHKALWATKFLNFDLYKAGESRILQLHELDEFRNYA 1519

Query: 62   ---PKIYKQRTKAWHDNCIRKREFSIGQKVLLFNSRL---------RWFGPFLVKEVFPH 113
                KI+K++TK WHD  I+ REF  GQ VLLFNSRL         RW GPF V +VFP+
Sbjct: 1520 YENAKIFKEKTKKWHDKKIQNREFQEGQLVLLFNSRLKLFPGKLKSRWSGPFKVTKVFPY 1579

[Close]

BLAST of CsaV3_5G023670 vs. TrEMBL
Match: tr|A0A2K3LHD8|A0A2K3LHD8_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g033907 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.1e-28
Identity = 68/144 (47.22%), Postives = 87/144 (60.42%), Query Frame = 0


Query: 2   YKTPIEMSPYAIIFGKACHLPLELEHKASW-----------IGILKPMRM---------- 61
           +KTPI MSP+ I++GKACHLPLELEHKA W            G  + +++          
Sbjct: 435 FKTPIGMSPFQIVYGKACHLPLELEHKALWATKFLNFDLSKAGESRILQLHELDEFRNYA 494

Query: 62  ---PKIYKQRTKAWHDNCIRKREFSIGQKVLLFNSRL---------RWFGPFLVKEVFPH 113
               KI+K++TK WHD  I+K+EF  GQ VLLFNSRL         RW GPF +K+V PH
Sbjct: 495 YENAKIFKEKTKKWHDRKIQKKEFREGQLVLLFNSRLRLFPGKLKSRWSGPFKIKKVLPH 554

The following BLAST results are available for this feature:

BLAST of CsaV3_5G023670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021824010.1	5.2e-31	51.06	LOW QUALITY PROTEIN: uncharacterized protein LOC110765232 [Prunus avium]	[more]
XP_020424473.1	3.4e-30	49.32	uncharacterized protein LOC109950325 [Prunus persica]	[more]
PNX62500.1	9.8e-30	49.31	hypothetical protein L195_g053015, partial [Trifolium pratense]	[more]
XP_020409874.1	1.3e-29	48.63	uncharacterized protein LOC109946451 [Prunus persica]	[more]
XP_022866222.1	1.7e-29	46.53	uncharacterized protein LOC111386025 [Olea europaea var. sylvestris]	[more]

BLAST of CsaV3_5G023670 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G023670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G023670 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2K3K887\|A0A2K3K887_TRIPR	6.5e-30	49.31	Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g05301...	[more]
tr\|A0A1S3CM09\|A0A1S3CM09_CUCME	5.5e-29	49.66	uncharacterized protein LOC103502497 OS=Cucumis melo OX=3656 GN=LOC103502497 PE=...	[more]
tr\|A0A2K3NJZ5\|A0A2K3NJZ5_TRIPR	1.2e-28	48.61	Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g02668...	[more]
tr\|A0A1B5Z879\|A0A1B5Z879_TRISU	4.7e-28	47.92	Uncharacterized protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_417...	[more]
tr\|A0A2K3LHD8\|A0A2K3LHD8_TRIPR	6.1e-28	47.22	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g033907 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G023670.1	CsaV3_5G023670.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G023670	CSPI05G14580	Wild cucumber (PI 183967)	cpicucB284

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G023670	Silver-seed gourd	carcucB0564
CsaV3_5G023670	Silver-seed gourd	carcucB0869
CsaV3_5G023670	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G023670	Cucumber (Gy14) v1	cgycucB010
CsaV3_5G023670	Cucurbita maxima (Rimu)	cmacucB0343
CsaV3_5G023670	Cucurbita maxima (Rimu)	cmacucB0887
CsaV3_5G023670	Cucurbita moschata (Rifu)	cmocucB0337
CsaV3_5G023670	Cucurbita moschata (Rifu)	cmocucB0876
CsaV3_5G023670	Cucurbita pepo (Zucchini)	cpecucB0225
CsaV3_5G023670	Cucurbita pepo (Zucchini)	cpecucB0545
CsaV3_5G023670	Bottle gourd (USVL1VR-Ls)	cuclsiB353
CsaV3_5G023670	Melon (DHL92) v3.5.1	cucmeB351
CsaV3_5G023670	Melon (DHL92) v3.6.1	cucmedB343
CsaV3_5G023670	Watermelon (Charleston Gray)	cucwcgB405
CsaV3_5G023670	Watermelon (97103) v1	cucwmB406
CsaV3_5G023670	Watermelon (97103) v2	cucwmbB386
CsaV3_5G023670	Wax gourd	cucwgoB463