CsaV3_5G023470 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G023470
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 17844124 .. 17844478 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTACCAAAACCCACCATCTTCTTCTTCCTTCGTTAGCCTAGCACCTGCCACCATTAACCTTCTCTCCGTCGTCGTTCGCCGATTTCTCTTCTTGGCCTTGTCTGTTGGTGTTTAGATGAAGTCGTGTCGCCCACTCTATCGTTGTTGTCATGTCTCCATTCACTATCCAGCCAAGTCTATTGTCTTTGTCTTCAAGCCGAAACCCATATGAATCCTTTCATTTTGTGTTGCATGTCATGTCCGAGCCCTTCCACCTTCGCATGCCACCATCCGCACCAAGCTTCCTTTATTCAAGCTTTGTTTCACATGTTCGTAGACGAGCTAGTTCTCCTTTCATTCGAGCCATTTGA

mRNA sequence

ATGCTCTACCAAAACCCACCATCTTCTTCTTCCTTCGTTAGCCTAGCACCTGCCACCATTAACCTTCTCTCCGTCGTCGTTCGCCGATTTCTCTTCTTGGCCTTCCGAAACCCATATGAATCCTTTCATTTTGTGTTGCATGTCATGTCCGAGCCCTTCCACCTTCGCATGCCACCATCCGCACCAAGCTTCCTTTATTCAAGCTTTGTTTCACATGTTCGTAGACGAGCTAGTTCTCCTTTCATTCGAGCCATTTGA

Coding sequence (CDS)

ATGCTCTACCAAAACCCACCATCTTCTTCTTCCTTCGTTAGCCTAGCACCTGCCACCATTAACCTTCTCTCCGTCGTCGTTCGCCGATTTCTCTTCTTGGCCTTCCGAAACCCATATGAATCCTTTCATTTTGTGTTGCATGTCATGTCCGAGCCCTTCCACCTTCGCATGCCACCATCCGCACCAAGCTTCCTTTATTCAAGCTTTGTTTCACATGTTCGTAGACGAGCTAGTTCTCCTTTCATTCGAGCCATTTGA

Protein sequence

MLYQNPPSSSSFVSLAPATINLLSVVVRRFLFLAFRNPYESFHFVLHVMSEPFHLRMPPSAPSFLYSSFVSHVRRRASSPFIRAI
Homology
[Close]
BLAST of CsaV3_5G023470 vs. NCBI nr
Match: KGN50991.1 (hypothetical protein Csa_5G387420 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 1.1e-38
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MLYQNPPSSSSFVSLAPATINLLSVVVRRFLFLAFRNPYESFHFVLHVMSEPFHLRMPPS 60
          MLYQNPPSSSSFVSLAPATINLLSVVVRRFLFLAFRNPYESFHFVLHVMSEPFHLRMPPS
Sbjct: 1  MLYQNPPSSSSFVSLAPATINLLSVVVRRFLFLAFRNPYESFHFVLHVMSEPFHLRMPPS 60

Query: 61 APSFLYSSFVSHVRRRASSPFIRAI 86
          APSFLYSSFVSHVRRRASSPFIRAI
Sbjct: 61 APSFLYSSFVSHVRRRASSPFIRAI 85

[Close]
BLAST of CsaV3_5G023470 vs. TrEMBL
Match: tr|A0A0A0KTI3|A0A0A0KTI3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387420 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.5e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MLYQNPPSSSSFVSLAPATINLLSVVVRRFLFLAFRNPYESFHFVLHVMSEPFHLRMPPS 60
          MLYQNPPSSSSFVSLAPATINLLSVVVRRFLFLAFRNPYESFHFVLHVMSEPFHLRMPPS
Sbjct: 1  MLYQNPPSSSSFVSLAPATINLLSVVVRRFLFLAFRNPYESFHFVLHVMSEPFHLRMPPS 60

Query: 61 APSFLYSSFVSHVRRRASSPFIRAI 86
          APSFLYSSFVSHVRRRASSPFIRAI
Sbjct: 61 APSFLYSSFVSHVRRRASSPFIRAI 85

The following BLAST results are available for this feature:
BLAST of CsaV3_5G023470 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50991.11.1e-38100.00hypothetical protein Csa_5G387420 [Cucumis sativus][more]
BLAST of CsaV3_5G023470 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G023470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G023470 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KTI3|A0A0A0KTI3_CUCSA7.5e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387420 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G023470.1CsaV3_5G023470.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G023470Silver-seed gourdcarcucB0564
CsaV3_5G023470Silver-seed gourdcarcucB0869
CsaV3_5G023470Cucumber (Gy14) v2cgybcucB232
CsaV3_5G023470Cucumber (Gy14) v1cgycucB010
CsaV3_5G023470Cucurbita maxima (Rimu)cmacucB0343
CsaV3_5G023470Cucurbita maxima (Rimu)cmacucB0887
CsaV3_5G023470Cucurbita moschata (Rifu)cmocucB0337
CsaV3_5G023470Cucurbita moschata (Rifu)cmocucB0876
CsaV3_5G023470Cucurbita pepo (Zucchini)cpecucB0225
CsaV3_5G023470Cucurbita pepo (Zucchini)cpecucB0545
CsaV3_5G023470Wild cucumber (PI 183967)cpicucB284
CsaV3_5G023470Bottle gourd (USVL1VR-Ls)cuclsiB353
CsaV3_5G023470Melon (DHL92) v3.5.1cucmeB351
CsaV3_5G023470Melon (DHL92) v3.6.1cucmedB343
CsaV3_5G023470Watermelon (Charleston Gray)cucwcgB405
CsaV3_5G023470Watermelon (97103) v1cucwmB406
CsaV3_5G023470Watermelon (97103) v2cucwmbB386
CsaV3_5G023470Wax gourdcucwgoB463