CsaV3_5G023460 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G023460
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	pentatricopeptide repeat-containing protein At5g08305
Location	chr5 : 17840028 .. 17841656 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCAACGTCCTTCCGCAAAATCGCCTTTCTGAATCAAACTCTAATCTCACTTCTCGATGGATGCAAATCAATGTTTGAACTCAAGAGAATCCATGCTCTACTTTTCACTTTAGGCATCTCGCAAGACGAAACAATCAAATCCAAACTTCTCTTATTCTCTGCACTCTCCCCTGCTAGGGATCTTGATTACTCGTATAAGCTGATATTGAATGTTCCCAACCCTACAACCTTCAATTGGAACACTCTCATAAGGGCGTTCTCAAATACCAAAAACCCAAATCCTTCGATCACCGTCTTCATCAAAATGCTGCAAAATGGGGTCTCTCCAGATTATTTGACATACCCTTTTCTGGTGAAGGCGACTTCCAAATTGCTGAATCAGGAGCTTGGGATGGCAGTGCATGTTCATATTGTGAAGTCTGGACATGAGATTGACAAATTCATACAGAATTCATTGATTCACATGTATGCCTCTTGTAGAGATATTGCATCTGCACGCAAGGTGTTTGATGAAATGCCAAGGAAGAATTTGGTGACTTGGAATGCCATGTTGGATGGGTATGCCAAATGTGGGGATTTGAATATGGCTAGGGAGGTGTTTAATTTAATGCCCGAGAAGGATGTTGTGTCATGGAGCTCTTTGATTGATGGGTACGTTAAAGGCAGGGTATATGGGGAGGCCATGGCCCTTTTTGAGCGCATGAGCTTTGATGGACCCATGGCAAATGAGGTGACTTTGGTGAGTGCTTTGTGTGCTTGTGCCCATTTAGGTGCACTTGAACATGGGAGGATGATGCACCGTTATATAGTTGAGAATGAGTTGCCGTTGACAATTGTGCTGCAGACATCTCTAGTGGACATGTATGCCAAATGTGGCGCAATACATGAAGCTTTGACCGTGTTTCGTGCATGTTCACTACAAGAGGCTGATGTTCTAATCTGGAATGCTATAATTGGAGGTTTGGCAACACATGGGTTGATTAAAGAGGCAATGAACTTGTTTTGTGAGATGAAAATGGTTGGGATTGTGCCAGATGAGATCACATACTTGTGCTTGTTAAGTTGTTGTGCTCATGGGGGACTGGTGGAAGAGGCTTGGTATTTCTTTGACTGCCTTCGTAAACATGGTATGATTCCAAAGGTTGAGCATTATGCTTGTATGGTAGATGCCTTATCAAGAGCTGGTCAGGTATCAGAGGCGTACCAATTCTTGTGTCAAATGCCCGTCCAACCAACATCTTCCATGTTAGGCGCGCTCCTTAGTGGCTGCATGAAACATGGCAAGCTGGACATTGCAAAAGTAGTAGGAAGGAGGCTTGTTGAGTTAGATCCAAATCATGATGGTAGATATGTTGGCTTATCCAACATATATGCTGCTGATAAGCGTTGGGATGATGCCAAAAATATTAGAGAAGCTATGGAAAGGAAAGGAGTGAAAAAGTCTCCCGGTTTTAGTTTCATTGAAGTATATGGAGTCCTTCATCGATTCATGGCCCATGATAAAACACATGGCGACTGTGAGCAGATTTTTATGATGCTGAATTTAATTGTAGATCAAATGAAACCCATTGAAGATTACGTACATCAAGAGTGTTGTTTCTATGACATCATGAACGTCTCCTGA

mRNA sequence

ATGAATGCAACGTCCTTCCGCAAAATCGCCTTTCTGAATCAAACTCTAATCTCACTTCTCGATGGATGCAAATCAATGTTTGAACTCAAGAGAATCCATGCTCTACTTTTCACTTTAGGCATCTCGCAAGACGAAACAATCAAATCCAAACTTCTCTTATTCTCTGCACTCTCCCCTGCTAGGGATCTTGATTACTCGTATAAGCTGATATTGAATGTTCCCAACCCTACAACCTTCAATTGGAACACTCTCATAAGGGCGTTCTCAAATACCAAAAACCCAAATCCTTCGATCACCGTCTTCATCAAAATGCTGCAAAATGGGGTCTCTCCAGATTATTTGACATACCCTTTTCTGGTGAAGGCGACTTCCAAATTGCTGAATCAGGAGCTTGGGATGGCAGTGCATGTTCATATTGTGAAGGTATATGGGGAGGCCATGGCCCTTTTTGAGCGCATGAGCTTTGATGGACCCATGGCAAATGAGGTGACTTTGGTGAGTGCTTTGTGTGCTTGTGCCCATTTAGGTGCACTTGAACATGGGAGGATGATGCACCGTTATATAGTTGAGAATGAGTTGCCGTTGACAATTGTGCTGCAGACATCTCTAGTGGACATGTATGCCAAATGTGGCGCAATACATGAAGCTTTGACCGTGTTTCGTGCATGTTCACTACAAGAGGCTGATGTTCTAATCTGGAATGCTATAATTGGAGGTTTGGCAACACATGGGTTGATTAAAGAGGCAATGAACTTGTTTTGTGAGATGAAAATGGTTGGGATTGTGCCAGATGAGATCACATACTTGTGCTTGTTAAGTTGTTGTGCTCATGGGGGACTGGTGGAAGAGGCTTGGTATTTCTTTGACTGCCTTCGTAAACATGGTATGATTCCAAAGGTTGAGCATTATGCTTGTATGGTAGATGCCTTATCAAGAGCTGGTCAGGTATCAGAGGCGTACCAATTCTTGTGTCAAATGCCCGTCCAACCAACATCTTCCATGTTAGGCGCGCTCCTTAGTGGCTGCATGAAACATGGCAAGCTGGACATTGCAAAAGTAGTAGGAAGGAGGCTTGTTGAGTTAGATCCAAATCATGATGGTAGATATGTTGGCTTATCCAACATATATGCTGCTGATAAGCGTTGGGATGATGCCAAAAATATTAGAGAAGCTATGGAAAGGAAAGGAGTGAAAAAGTCTCCCGGTTTTAGTTTCATTGAAGTATATGGAGTCCTTCATCGATTCATGGCCCATGATAAAACACATGGCGACTGTGAGCAGATTTTTATGATGCTGAATTTAATTGTAGATCAAATGAAACCCATTGAAGATTACGTACATCAAGAGTGTTGTTTCTATGACATCATGAACGTCTCCTGA

Coding sequence (CDS)

ATGAATGCAACGTCCTTCCGCAAAATCGCCTTTCTGAATCAAACTCTAATCTCACTTCTCGATGGATGCAAATCAATGTTTGAACTCAAGAGAATCCATGCTCTACTTTTCACTTTAGGCATCTCGCAAGACGAAACAATCAAATCCAAACTTCTCTTATTCTCTGCACTCTCCCCTGCTAGGGATCTTGATTACTCGTATAAGCTGATATTGAATGTTCCCAACCCTACAACCTTCAATTGGAACACTCTCATAAGGGCGTTCTCAAATACCAAAAACCCAAATCCTTCGATCACCGTCTTCATCAAAATGCTGCAAAATGGGGTCTCTCCAGATTATTTGACATACCCTTTTCTGGTGAAGGCGACTTCCAAATTGCTGAATCAGGAGCTTGGGATGGCAGTGCATGTTCATATTGTGAAGGTATATGGGGAGGCCATGGCCCTTTTTGAGCGCATGAGCTTTGATGGACCCATGGCAAATGAGGTGACTTTGGTGAGTGCTTTGTGTGCTTGTGCCCATTTAGGTGCACTTGAACATGGGAGGATGATGCACCGTTATATAGTTGAGAATGAGTTGCCGTTGACAATTGTGCTGCAGACATCTCTAGTGGACATGTATGCCAAATGTGGCGCAATACATGAAGCTTTGACCGTGTTTCGTGCATGTTCACTACAAGAGGCTGATGTTCTAATCTGGAATGCTATAATTGGAGGTTTGGCAACACATGGGTTGATTAAAGAGGCAATGAACTTGTTTTGTGAGATGAAAATGGTTGGGATTGTGCCAGATGAGATCACATACTTGTGCTTGTTAAGTTGTTGTGCTCATGGGGGACTGGTGGAAGAGGCTTGGTATTTCTTTGACTGCCTTCGTAAACATGGTATGATTCCAAAGGTTGAGCATTATGCTTGTATGGTAGATGCCTTATCAAGAGCTGGTCAGGTATCAGAGGCGTACCAATTCTTGTGTCAAATGCCCGTCCAACCAACATCTTCCATGTTAGGCGCGCTCCTTAGTGGCTGCATGAAACATGGCAAGCTGGACATTGCAAAAGTAGTAGGAAGGAGGCTTGTTGAGTTAGATCCAAATCATGATGGTAGATATGTTGGCTTATCCAACATATATGCTGCTGATAAGCGTTGGGATGATGCCAAAAATATTAGAGAAGCTATGGAAAGGAAAGGAGTGAAAAAGTCTCCCGGTTTTAGTTTCATTGAAGTATATGGAGTCCTTCATCGATTCATGGCCCATGATAAAACACATGGCGACTGTGAGCAGATTTTTATGATGCTGAATTTAATTGTAGATCAAATGAAACCCATTGAAGATTACGTACATCAAGAGTGTTGTTTCTATGACATCATGAACGTCTCCTGA

Protein sequence

MNATSFRKIAFLNQTLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCLRKHGMIPKVEHYACMVDALSRAGQVSEAYQFLCQMPVQPTSSMLGALLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFSFIEVYGVLHRFMAHDKTHGDCEQIFMMLNLIVDQMKPIEDYVHQECCFYDIMNVS

Homology

[Close]

BLAST of CsaV3_5G023460 vs. NCBI nr
Match: XP_011655189.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g08305 isoform X1 [Cucumis sativus] >XP_011655190.1 PREDICTED: pentatricopeptide repeat-containing protein At5g08305 isoform X1 [Cucumis sativus] >XP_011655191.1 PREDICTED: pentatricopeptide repeat-containing protein At5g08305 isoform X1 [Cucumis sativus] >KGN50990.1 hypothetical protein Csa_5G387410 [Cucumis sativus])

HSP 1 Score: 743.0 bits (1917), Expect = 5.9e-211
Identity = 453/542 (83.58%), Postives = 454/542 (83.76%), Query Frame = 0


Query: 1   MNATSFRKIAFLNQTLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPA 60
           MNATSFRKIAFLNQTLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPA
Sbjct: 1   MNATSFRKIAFLNQTLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPA 60

Query: 61  RDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLV 120
           RDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLV
Sbjct: 61  RDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLV 120

Query: 121 KATSKLLNQELGMAVHVHIVKVYGE---------------------AMALF--------- 180
           KATSKLLNQELGMAVHVHIVK   E                     A  +F         
Sbjct: 121 KATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLV 180

Query: 181 -----------------------------------------------------ERMSFDG 240
                                                                ERMSFDG
Sbjct: 181 TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERMSFDG 240

Query: 241 PMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEAL 300
           PMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEAL
Sbjct: 241 PMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEAL 300

Query: 301 TVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXX 360
           TVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXX
Sbjct: 301 TVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGA 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGA
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGA 420

Query: 421 LLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGV 460
           LLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGV
Sbjct: 421 LLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGV 480

[Close]

BLAST of CsaV3_5G023460 vs. NCBI nr
Match: XP_008460457.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Cucumis melo] >XP_008460458.1 PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Cucumis melo])

HSP 1 Score: 703.0 bits (1813), Expect = 6.8e-199
Identity = 429/542 (79.15%), Postives = 445/542 (82.10%), Query Frame = 0


Query: 1   MNATSFRKIAFLNQTLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPA 60
           MNATSFRKIAFLNQ LISLLDGCKSMFELKRIHALLFTLGISQDE IKSKLLLFSALSPA
Sbjct: 2   MNATSFRKIAFLNQNLISLLDGCKSMFELKRIHALLFTLGISQDEIIKSKLLLFSALSPA 61

Query: 61  RDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLV 120
           RDLDYSYKLILN+PNPTTFNWNTLIR FSNTKNPNPSITVFIKMLQNGVSP+YLTYPFLV
Sbjct: 62  RDLDYSYKLILNLPNPTTFNWNTLIRGFSNTKNPNPSITVFIKMLQNGVSPNYLTYPFLV 121

Query: 121 KATSKLLNQELGMAVHVHIVKVYGE---------------------AMALFER------- 180
           KATSKLLNQELGMA+HVHIVK   E                     A  +F+        
Sbjct: 122 KATSKLLNQELGMALHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMATKNLV 181

Query: 181 -------------------------------------------------------MSFDG 240
                                                                  MSF G
Sbjct: 182 TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSFVG 241

Query: 241 PMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEAL 300
           PMANEVTLVS LCACAHLGALE GRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEAL
Sbjct: 242 PMANEVTLVSVLCACAHLGALERGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEAL 301

Query: 301 TVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXX 360
           TVFRACSLQEADVLIWNAIIGGLATHGLIKE+++LFC+M+MVGIVPDEITYLXXXXXXXX
Sbjct: 302 TVFRACSLQEADVLIWNAIIGGLATHGLIKESLDLFCKMQMVGIVPDEITYLXXXXXXXX 361

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGA 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGA
Sbjct: 362 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGA 421

Query: 421 LLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGV 460
           LLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKN+REAMERKG+
Sbjct: 422 LLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNMREAMERKGM 481

[Close]

BLAST of CsaV3_5G023460 vs. NCBI nr
Match: XP_022987941.1 (pentatricopeptide repeat-containing protein At5g08305 isoform X1 [Cucurbita maxima])

HSP 1 Score: 588.6 bits (1516), Expect = 1.9e-164
Identity = 365/528 (69.13%), Postives = 404/528 (76.52%), Query Frame = 0


Query: 15  TLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNVP 74
           +L SLLD CKSM EL+RIHALLFT G+SQD+ + SKLL FSALSPA DLDYSYKL+LN+P
Sbjct: 7   SLTSLLDKCKSMSELRRIHALLFTFGVSQDDAVVSKLLSFSALSPAGDLDYSYKLLLNLP 66

Query: 75  NPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMA 134
           NPTTF WNTLIR FSN++NPN SITVF++ML+NGVSPDY+TYPFL KAT+KLLN++LGMA
Sbjct: 67  NPTTFKWNTLIRGFSNSRNPNRSITVFVRMLRNGVSPDYMTYPFLGKATAKLLNRKLGMA 126

Query: 135 VHVHIVKVYGEAMAL----------------FERMSFD---------------------- 194
           VHVH+ K   E                    F R  FD                      
Sbjct: 127 VHVHVAKTGHEVDRFVMNSLIHMYASCGDIAFARKVFDEMPTKNLVSXXXXXXXXXXXXX 186

Query: 195 ---------------------------------------------GPMANEVTLVSALCA 254
                                                        GPMANEVTLVS LCA
Sbjct: 187 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGPMANEVTLVSVLCA 246

Query: 255 CAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVL 314
           CAHLGALE GRMMH YIVENELPLTIVL TSLVDMYAKCGAIHEAL  FRAC LQ  DVL
Sbjct: 247 CAHLGALEQGRMMHGYIVENELPLTIVLLTSLVDMYAKCGAIHEALAAFRACPLQRTDVL 306

Query: 315 IWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXXXXXXXXXXXXXXXX 374
           IWNAIIGGLATHGLIKE+M+LF EM+MVGI PDEITYLXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 307 IWNAIIGGLATHGLIKESMDLFTEMQMVGIAPDEITYLXXXXXXXXXXXXXXXXXXXXXX 366

Query: 375 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGALLSGCMKHGKLDIA 434
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQM +QPTSSMLGALLSGCMKHGKLD+A
Sbjct: 367 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMTIQPTSSMLGALLSGCMKHGKLDLA 426

Query: 435 KVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFSFIEVYGV 460
           +VVGRRLVELDP+HDGRY+GLSNIYA DKRW+DA+NIREAMER+GVKKSPGFSF+EV+G+
Sbjct: 427 EVVGRRLVELDPDHDGRYIGLSNIYAVDKRWNDARNIREAMERRGVKKSPGFSFVEVFGI 486

[Close]

BLAST of CsaV3_5G023460 vs. NCBI nr
Match: XP_022942610.1 (pentatricopeptide repeat-containing protein At5g08305 [Cucurbita moschata])

HSP 1 Score: 585.9 bits (1509), Expect = 1.2e-163
Identity = 365/528 (69.13%), Postives = 404/528 (76.52%), Query Frame = 0


Query: 15  TLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNVP 74
           +LISLLD CKSM EL+RIHALLFT G SQD+ + SKLL FSALSPA DLDYSYKL+LN+P
Sbjct: 6   SLISLLDKCKSMSELRRIHALLFTFGASQDDAVVSKLLSFSALSPAGDLDYSYKLLLNLP 65

Query: 75  NPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMA 134
           NPTTF WNTLIR FSN++NPN SITVF++ML+NGVSPDY+TYPFL KAT+KLLN++LGMA
Sbjct: 66  NPTTFKWNTLIRGFSNSRNPNRSITVFVRMLRNGVSPDYMTYPFLGKATAKLLNRKLGMA 125

Query: 135 VHVHIVKVYGE---------------------AMALFERM-------------------- 194
           VHVH+ K   E                     A  +F+ M                    
Sbjct: 126 VHVHVAKTGHEVDRFVMNSLIHMYASCGDIALARKVFDEMPTKNLVSXXXXXXXXXXXXX 185

Query: 195 ------------------------------------------SFDGPMANEVTLVSALCA 254
                                                        GPMANEVTLVS LCA
Sbjct: 186 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPMANEVTLVSVLCA 245

Query: 255 CAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVL 314
           CAHLGALE GRMMH YIVENELP TIVL TSLVDMYAKCGAIHEAL  FRAC LQ  DVL
Sbjct: 246 CAHLGALEQGRMMHGYIVENELPFTIVLLTSLVDMYAKCGAIHEALAAFRACPLQRTDVL 305

Query: 315 IWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXXXXXXXXXXXXXXXX 374
           IWNAIIGGLATHGLIKE+M+LF EM+MVGI PDEITYLXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 306 IWNAIIGGLATHGLIKESMDLFSEMQMVGIAPDEITYLXXXXXXXXXXXXXXXXXXXXXX 365

Query: 375 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGALLSGCMKHGKLDIA 434
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQM VQPTSSMLGALLSGCMKHGKLD+A
Sbjct: 366 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMTVQPTSSMLGALLSGCMKHGKLDLA 425

Query: 435 KVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFSFIEVYGV 460
           +VVGRRLVELDP+HDGRYVGLSNIYA DKRW+DA+NIREAMER+GVKKSPGFSF+EV+G+
Sbjct: 426 EVVGRRLVELDPDHDGRYVGLSNIYAVDKRWNDARNIREAMERRGVKKSPGFSFVEVFGI 485

[Close]

BLAST of CsaV3_5G023460 vs. NCBI nr
Match: XP_023532676.1 (pentatricopeptide repeat-containing protein At5g08305 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023532683.1 pentatricopeptide repeat-containing protein At5g08305 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 585.1 bits (1507), Expect = 2.1e-163
Identity = 366/528 (69.32%), Postives = 403/528 (76.33%), Query Frame = 0


Query: 15  TLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNVP 74
           +LISLLD CKSM EL+RIHALLFT G+SQD+ + SKLL FSALSPA DLDYSYKL+LN+P
Sbjct: 6   SLISLLDKCKSMSELRRIHALLFTFGVSQDDAVVSKLLSFSALSPAGDLDYSYKLLLNLP 65

Query: 75  NPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMA 134
           NPTTF WNTLIR FSN++NPN SITVF++ML+NGVSPDY+TYPFL KA +KLLNQ+LGMA
Sbjct: 66  NPTTFKWNTLIRGFSNSRNPNRSITVFVRMLRNGVSPDYMTYPFLGKAIAKLLNQKLGMA 125

Query: 135 VHVHIVKVYGEAMAL----------------FERMSFD---------------------- 194
           VHVH+ K   E                    F R  FD                      
Sbjct: 126 VHVHVAKTGHEVDRFVMNSLIHMYASCGDIAFARKVFDEMPTKNLVSXXXXXXXXXXXXX 185

Query: 195 ---------------------------------------------GPMANEVTLVSALCA 254
                                                        GPMANEVTLVS LCA
Sbjct: 186 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPMANEVTLVSVLCA 245

Query: 255 CAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVL 314
           CAHLGALE GRMMH YIVENELPLTIVL TSLVDMYAKCGAIHEAL  FRAC LQ  DVL
Sbjct: 246 CAHLGALEQGRMMHGYIVENELPLTIVLLTSLVDMYAKCGAIHEALAAFRACPLQRTDVL 305

Query: 315 IWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXXXXXXXXXXXXXXXX 374
           IWNAIIGGLATHGLIKE+M+LF EM+MVGI PDEITYLXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 306 IWNAIIGGLATHGLIKESMDLFSEMQMVGIAPDEITYLXXXXXXXXXXXXXXXXXXXXXX 365

Query: 375 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGALLSGCMKHGKLDIA 434
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQM VQPTSSMLGALLSGCMKHGKLD+A
Sbjct: 366 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMTVQPTSSMLGALLSGCMKHGKLDLA 425

Query: 435 KVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFSFIEVYGV 460
           +VVGRRLVELDP+HDGRYVGLSNIYA DKRW+DA+NIREAME++GVKKSPGFSF+EV+G+
Sbjct: 426 EVVGRRLVELDPDHDGRYVGLSNIYAVDKRWNDARNIREAMEKRGVKKSPGFSFVEVFGI 485

[Close]

BLAST of CsaV3_5G023460 vs. TAIR10
Match: AT5G08305.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 341.3 bits (874), Expect = 9.4e-94
Identity = 246/511 (48.14%), Postives = 330/511 (64.58%), Query Frame = 0


Query: 23  CKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNVPNPTTFNWN 82
           CKSM EL +IH LL TLG+S++E   S+ L FSALS + D+DY+YK +  + +P  + WN
Sbjct: 18  CKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWN 77

Query: 83  TLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVK- 142
            +IR FSN++NP  SI+V+I+ML+ G+ PD++TYPFL+K++S+L N++LG ++H  +VK 
Sbjct: 78  FVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKS 137

Query: 143 --------------VYG------EAMALFERM---------------------------- 202
                         +YG       A  LF+ M                            
Sbjct: 138 GLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNXXXXXXXXXXXXXXXXXXXXXXXX 197

Query: 203 -----------------------------------SFDGPMANEVTLVSALCACAHLGAL 262
                                                    ANEVT+VS +CACAHLGAL
Sbjct: 198 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMGSSKANEVTMVSVICACAHLGAL 257

Query: 263 EHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIG 322
             G+ +HRYI++  LPLT++LQTSL+DMYAKCG+I +A +VF   S++E D L+WNAIIG
Sbjct: 258 NRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIG 317

Query: 323 GLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 382
           GLA+HG I+E++ LF +M+   I        XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 318 GLASHGFIRESLQLFHKMRESKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 377

Query: 383 XXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGALLSGCMKHGKLDIAKVVGRRL 442
           XXXXXXXXXXXXXXXXXXXXXXXXX  MP++PT SMLGALL+GC+ HG L++A+ VG++L
Sbjct: 378 XXXXXXXXXXXXXXXXXXXXXXXXXXXMPIKPTGSMLGALLNGCINHGNLELAETVGKKL 437

Query: 443 VELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFSFIEVYGVLHRFMAH 450
           +EL P++DGRYVGL+N+YA +K++  A+++REAME+KGVKK  G S +++ G  HRF+AH
Sbjct: 438 IELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDLDGTRHRFIAH 497

[Close]

BLAST of CsaV3_5G023460 vs. TAIR10
Match: AT5G06540.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 199.1 bits (505), Expect = 5.8e-51
Identity = 144/529 (27.22%), Postives = 231/529 (43.67%), Query Frame = 0


Query: 17  ISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLF-----SALSPARDLDYSYKLIL 76
           ++LL  C S  +LK IH  L    +  D  + S+LL       +   P   L Y+Y +  
Sbjct: 16  LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFS 75

Query: 77  NVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQEL 136
            + NP  F +N LIR FS    P+ +   + +ML++ + PD +T+PFL+KA+S++    +
Sbjct: 76  QIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLV 135

Query: 137 GMAVHVHIVK------VYGE---------------AMALFERMSF--------------- 196
           G   H  IV+      VY E               A  +F +M F               
Sbjct: 136 GEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRXXXXXXXXXXXXXX 195

Query: 197 -----------------------------------------------DGPMANEVTLVSA 256
                                                           G +ANE  +VS 
Sbjct: 196 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVANETVMVSV 255

Query: 257 LCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEA 316
           + +CAHLGALE G   + Y+V++ + + ++L T+LVDM+ +CG I +A+ VF    L E 
Sbjct: 256 ISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFE--GLPET 315

Query: 317 DVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITY-LXXXXXXXXXXXXXXXXXX 376
           D L W++II GLA HG   +AM+ F +M  +G +P ++T+                    
Sbjct: 316 DSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIY 375

Query: 377 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGALLSGCMKHGK 436
                                                +M V+P + +LGALL  C  +  
Sbjct: 376 ENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKN 435

Query: 437 LDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFSFIE 456
            ++A+ VG  L+++ P H G YV LSNIYA   +WD  +++R+ M+ K VKK PG+S IE
Sbjct: 436 TEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIE 495

[Close]

BLAST of CsaV3_5G023460 vs. TAIR10
Match: AT2G22410.1 (SLOW GROWTH 1)

HSP 1 Score: 194.5 bits (493), Expect = 1.4e-49
Identity = 162/634 (25.55%), Postives = 241/634 (38.01%), Query Frame = 0


Query: 12  LNQTLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLIL 71
           L+  L+SLL+ CK +  LK+I A +   G+  D    S+L+ F ALS +R LDYS K++ 
Sbjct: 52  LHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILK 111

Query: 72  NVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGV---SPDYLTYPFLVKATSKLLN 131
            + NP  F+WN  IR FS ++NP  S  ++ +ML++G     PD+ TYP L K  + L  
Sbjct: 112 GIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRL 171

Query: 132 QELGMAVHVHIVKV---------------------------------------------- 191
             LG  +  H++K+                                              
Sbjct: 172 SSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLING 231

Query: 192 ---YGE---AMALFERMSFDG--------------------------------------- 251
               GE   A+ +++ M  +G                                       
Sbjct: 232 YKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMT 291

Query: 252 -PMAN------------------------------------------------------- 311
            P+ N                                                       
Sbjct: 292 IPLVNALMDMFSKCGDIHEARRIFDNLEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 351

Query: 312 -------------------------------------EVTLVSALCACAHLGALEHGRMM 371
                                                E+T++  L AC+ LGAL+ G  +
Sbjct: 352 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNTKPDEITMIHCLSACSQLGALDVGIWI 411

Query: 372 HRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHG 431
           HRYI +  L L + L TSLVDMYAKCG I EAL+VF    +Q  + L + AIIGGLA HG
Sbjct: 412 HRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFH--GIQTRNSLTYTAIIGGLALHG 471

Query: 432 LIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 458
               A++ F EM   GI PDEIT++                                   
Sbjct: 472 DASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHY 531

[Close]

BLAST of CsaV3_5G023460 vs. TAIR10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 193.0 bits (489), Expect = 4.2e-49
Identity = 140/497 (28.17%), Postives = 208/497 (41.85%), Query Frame = 0


Query: 17  ISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARD-LDYSYKLILNVPN 76
           +S L  C    ELK+IHA +   G+ QD    +K L F   S + D L Y+  +      
Sbjct: 18  MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77

Query: 77  PTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAV 136
           P TF WN +IR FS +  P  S+ ++ +ML +    +  T+P L+KA S L   E    +
Sbjct: 78  PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQI 137

Query: 137 HVHIVKVYGE---------------------AMALFERM--------------------- 196
           H  I K+  E                     A  LF+R+                     
Sbjct: 138 HAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPXXXXXXXXXXXXXXXXXX 197

Query: 197 -----------------------------------------SFDGPMANEVTLVSALCAC 256
                                                           + V+L +AL AC
Sbjct: 198 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPDNVSLANALSAC 257

Query: 257 AHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLI 316
           A LGALE G+ +H Y+ +  + +  VL   L+DMYAKCG + EAL VF+  ++++  V  
Sbjct: 258 AQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFK--NIKKKSVQA 317

Query: 317 WNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXXXXXXXXXXXXXXXXX 376
           W A+I G A HG  +EA++ F EM+ +GI P+ IT+                        
Sbjct: 318 WTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSME 377

Query: 377 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQ-MPVQPTSSMLGALLSGCMKHGKLDIA 429
                                           Q MP++P + + GALL  C  H  +++ 
Sbjct: 378 RDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELG 437

[Close]

BLAST of CsaV3_5G023460 vs. TAIR10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 189.9 bits (481), Expect = 3.5e-48
Identity = 184/485 (37.94%), Postives = 268/485 (55.26%), Query Frame = 0


Query: 22  GCKSMFELKRIHALLFTLGISQDETIKSKLLLF--SALSPARDLDYSYKLILNVPNP-TT 81
           G  S+ +L++IHA     G+S  +    K L+F   +L     + Y++K+   +  P   
Sbjct: 26  GVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINV 85

Query: 82  FNWNTLIRAFSNTKNPNPSITVFIKMLQNG-VSPDYLTYPFLVKATSKLLNQELGMAVHV 141
           F WNTLIR ++   N   + +++ +M  +G V PD  TYPFL+KA + + +  LG  +H 
Sbjct: 86  FIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHS 145

Query: 142 HIV----------------------------KVYG------------------------E 201
            ++                            KV+                         E
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205

Query: 202 AMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVD 261
           A+AL+  M+  G   +  T+VS L ACA +GAL  G+ +H Y+++  L   +     L+D
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLD 265

Query: 262 MYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMV-GIVPD 321
           +YA+CG + EA T+F    + + + + W ++I GLA +G  KEA+ LF  M+   G++P 
Sbjct: 266 LYARCGRVEEAKTLFD--EMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC 325

Query: 322 EITYL-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 381
           EIT++       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 326 EITFVGILYACSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 385

Query: 382 CQMPVQPTSSMLGALLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWD 441
              P+QP   +   LL  C  HG  D+A+    ++++L+PNH G YV LSN+YA+++RW 
Sbjct: 386 XXXPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWS 445

Query: 442 DAKNIREAMERKGVKKSPGFSFIEVYGVLHRFMAHDKTHGDCEQIFMMLNLIVDQMKPIE 449
           D + IR+ M R GVKK PG S +EV   +H F+  DK+H   + I+  L  +  +++  E
Sbjct: 446 DVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRS-E 505

[Close]

BLAST of CsaV3_5G023460 vs. Swiss-Prot
Match: sp|P0C8Q7|PP369_ARATH (Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E105 PE=2 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 1.7e-92
Identity = 246/511 (48.14%), Postives = 330/511 (64.58%), Query Frame = 0


Query: 23  CKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNVPNPTTFNWN 82
           CKSM EL +IH LL TLG+S++E   S+ L FSALS + D+DY+YK +  + +P  + WN
Sbjct: 18  CKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWN 77

Query: 83  TLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVK- 142
            +IR FSN++NP  SI+V+I+ML+ G+ PD++TYPFL+K++S+L N++LG ++H  +VK 
Sbjct: 78  FVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKS 137

Query: 143 --------------VYG------EAMALFERM---------------------------- 202
                         +YG       A  LF+ M                            
Sbjct: 138 GLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNXXXXXXXXXXXXXXXXXXXXXXXX 197

Query: 203 -----------------------------------SFDGPMANEVTLVSALCACAHLGAL 262
                                                    ANEVT+VS +CACAHLGAL
Sbjct: 198 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMGSSKANEVTMVSVICACAHLGAL 257

Query: 263 EHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIG 322
             G+ +HRYI++  LPLT++LQTSL+DMYAKCG+I +A +VF   S++E D L+WNAIIG
Sbjct: 258 NRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIG 317

Query: 323 GLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 382
           GLA+HG I+E++ LF +M+   I        XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 318 GLASHGFIRESLQLFHKMRESKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 377

Query: 383 XXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGALLSGCMKHGKLDIAKVVGRRL 442
           XXXXXXXXXXXXXXXXXXXXXXXXX  MP++PT SMLGALL+GC+ HG L++A+ VG++L
Sbjct: 378 XXXXXXXXXXXXXXXXXXXXXXXXXXXMPIKPTGSMLGALLNGCINHGNLELAETVGKKL 437

Query: 443 VELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFSFIEVYGVLHRFMAH 450
           +EL P++DGRYVGL+N+YA +K++  A+++REAME+KGVKK  G S +++ G  HRF+AH
Sbjct: 438 IELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDLDGTRHRFIAH 497

[Close]

BLAST of CsaV3_5G023460 vs. Swiss-Prot
Match: sp|Q9FG16|PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H88 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.0e-49
Identity = 144/529 (27.22%), Postives = 231/529 (43.67%), Query Frame = 0


Query: 17  ISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLF-----SALSPARDLDYSYKLIL 76
           ++LL  C S  +LK IH  L    +  D  + S+LL       +   P   L Y+Y +  
Sbjct: 16  LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFS 75

Query: 77  NVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQEL 136
            + NP  F +N LIR FS    P+ +   + +ML++ + PD +T+PFL+KA+S++    +
Sbjct: 76  QIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLV 135

Query: 137 GMAVHVHIVK------VYGE---------------AMALFERMSF--------------- 196
           G   H  IV+      VY E               A  +F +M F               
Sbjct: 136 GEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRXXXXXXXXXXXXXX 195

Query: 197 -----------------------------------------------DGPMANEVTLVSA 256
                                                           G +ANE  +VS 
Sbjct: 196 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVANETVMVSV 255

Query: 257 LCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEA 316
           + +CAHLGALE G   + Y+V++ + + ++L T+LVDM+ +CG I +A+ VF    L E 
Sbjct: 256 ISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFE--GLPET 315

Query: 317 DVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITY-LXXXXXXXXXXXXXXXXXX 376
           D L W++II GLA HG   +AM+ F +M  +G +P ++T+                    
Sbjct: 316 DSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIY 375

Query: 377 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGALLSGCMKHGK 436
                                                +M V+P + +LGALL  C  +  
Sbjct: 376 ENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKN 435

Query: 437 LDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFSFIE 456
            ++A+ VG  L+++ P H G YV LSNIYA   +WD  +++R+ M+ K VKK PG+S IE
Sbjct: 436 TEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIE 495

[Close]

BLAST of CsaV3_5G023460 vs. Swiss-Prot
Match: sp|Q9SJZ3|PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.6e-48
Identity = 162/634 (25.55%), Postives = 241/634 (38.01%), Query Frame = 0


Query: 12  LNQTLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLIL 71
           L+  L+SLL+ CK +  LK+I A +   G+  D    S+L+ F ALS +R LDYS K++ 
Sbjct: 52  LHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILK 111

Query: 72  NVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGV---SPDYLTYPFLVKATSKLLN 131
            + NP  F+WN  IR FS ++NP  S  ++ +ML++G     PD+ TYP L K  + L  
Sbjct: 112 GIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRL 171

Query: 132 QELGMAVHVHIVKV---------------------------------------------- 191
             LG  +  H++K+                                              
Sbjct: 172 SSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLING 231

Query: 192 ---YGE---AMALFERMSFDG--------------------------------------- 251
               GE   A+ +++ M  +G                                       
Sbjct: 232 YKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMT 291

Query: 252 -PMAN------------------------------------------------------- 311
            P+ N                                                       
Sbjct: 292 IPLVNALMDMFSKCGDIHEARRIFDNLEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 351

Query: 312 -------------------------------------EVTLVSALCACAHLGALEHGRMM 371
                                                E+T++  L AC+ LGAL+ G  +
Sbjct: 352 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNTKPDEITMIHCLSACSQLGALDVGIWI 411

Query: 372 HRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHG 431
           HRYI +  L L + L TSLVDMYAKCG I EAL+VF    +Q  + L + AIIGGLA HG
Sbjct: 412 HRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFH--GIQTRNSLTYTAIIGGLALHG 471

Query: 432 LIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 458
               A++ F EM   GI PDEIT++                                   
Sbjct: 472 DASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHY 531

[Close]

BLAST of CsaV3_5G023460 vs. Swiss-Prot
Match: sp|Q9FJY7|PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.5e-48
Identity = 140/497 (28.17%), Postives = 208/497 (41.85%), Query Frame = 0


Query: 17  ISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARD-LDYSYKLILNVPN 76
           +S L  C    ELK+IHA +   G+ QD    +K L F   S + D L Y+  +      
Sbjct: 18  MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77

Query: 77  PTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAV 136
           P TF WN +IR FS +  P  S+ ++ +ML +    +  T+P L+KA S L   E    +
Sbjct: 78  PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQI 137

Query: 137 HVHIVKVYGE---------------------AMALFERM--------------------- 196
           H  I K+  E                     A  LF+R+                     
Sbjct: 138 HAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPXXXXXXXXXXXXXXXXXX 197

Query: 197 -----------------------------------------SFDGPMANEVTLVSALCAC 256
                                                           + V+L +AL AC
Sbjct: 198 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPDNVSLANALSAC 257

Query: 257 AHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLI 316
           A LGALE G+ +H Y+ +  + +  VL   L+DMYAKCG + EAL VF+  ++++  V  
Sbjct: 258 AQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFK--NIKKKSVQA 317

Query: 317 WNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXXXXXXXXXXXXXXXXX 376
           W A+I G A HG  +EA++ F EM+ +GI P+ IT+                        
Sbjct: 318 WTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSME 377

Query: 377 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQ-MPVQPTSSMLGALLSGCMKHGKLDIA 429
                                           Q MP++P + + GALL  C  H  +++ 
Sbjct: 378 RDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELG 437

[Close]

BLAST of CsaV3_5G023460 vs. Swiss-Prot
Match: sp|A8MQA3|PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 189.9 bits (481), Expect = 6.3e-47
Identity = 184/485 (37.94%), Postives = 268/485 (55.26%), Query Frame = 0


Query: 22  GCKSMFELKRIHALLFTLGISQDETIKSKLLLF--SALSPARDLDYSYKLILNVPNP-TT 81
           G  S+ +L++IHA     G+S  +    K L+F   +L     + Y++K+   +  P   
Sbjct: 26  GVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINV 85

Query: 82  FNWNTLIRAFSNTKNPNPSITVFIKMLQNG-VSPDYLTYPFLVKATSKLLNQELGMAVHV 141
           F WNTLIR ++   N   + +++ +M  +G V PD  TYPFL+KA + + +  LG  +H 
Sbjct: 86  FIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHS 145

Query: 142 HIV----------------------------KVYG------------------------E 201
            ++                            KV+                         E
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205

Query: 202 AMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVD 261
           A+AL+  M+  G   +  T+VS L ACA +GAL  G+ +H Y+++  L   +     L+D
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLD 265

Query: 262 MYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMV-GIVPD 321
           +YA+CG + EA T+F    + + + + W ++I GLA +G  KEA+ LF  M+   G++P 
Sbjct: 266 LYARCGRVEEAKTLFD--EMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC 325

Query: 322 EITYL-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 381
           EIT++       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 326 EITFVGILYACSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 385

Query: 382 CQMPVQPTSSMLGALLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWD 441
              P+QP   +   LL  C  HG  D+A+    ++++L+PNH G YV LSN+YA+++RW 
Sbjct: 386 XXXPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWS 445

Query: 442 DAKNIREAMERKGVKKSPGFSFIEVYGVLHRFMAHDKTHGDCEQIFMMLNLIVDQMKPIE 449
           D + IR+ M R GVKK PG S +EV   +H F+  DK+H   + I+  L  +  +++  E
Sbjct: 446 DVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRS-E 505

[Close]

BLAST of CsaV3_5G023460 vs. TrEMBL
Match: tr|A0A0A0KMZ3|A0A0A0KMZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387410 PE=4 SV=1)

HSP 1 Score: 743.0 bits (1917), Expect = 3.9e-211
Identity = 453/542 (83.58%), Postives = 454/542 (83.76%), Query Frame = 0


Query: 1   MNATSFRKIAFLNQTLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPA 60
           MNATSFRKIAFLNQTLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPA
Sbjct: 1   MNATSFRKIAFLNQTLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPA 60

Query: 61  RDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLV 120
           RDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLV
Sbjct: 61  RDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLV 120

Query: 121 KATSKLLNQELGMAVHVHIVKVYGE---------------------AMALF--------- 180
           KATSKLLNQELGMAVHVHIVK   E                     A  +F         
Sbjct: 121 KATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLV 180

Query: 181 -----------------------------------------------------ERMSFDG 240
                                                                ERMSFDG
Sbjct: 181 TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERMSFDG 240

Query: 241 PMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEAL 300
           PMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEAL
Sbjct: 241 PMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEAL 300

Query: 301 TVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXX 360
           TVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXX
Sbjct: 301 TVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGA 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGA
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGA 420

Query: 421 LLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGV 460
           LLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGV
Sbjct: 421 LLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGV 480

[Close]

BLAST of CsaV3_5G023460 vs. TrEMBL
Match: tr|A0A1S3CCZ9|A0A1S3CCZ9_CUCME (pentatricopeptide repeat-containing protein At5g08305 OS=Cucumis melo OX=3656 GN=LOC103499271 PE=4 SV=1)

HSP 1 Score: 703.0 bits (1813), Expect = 4.5e-199
Identity = 429/542 (79.15%), Postives = 445/542 (82.10%), Query Frame = 0


Query: 1   MNATSFRKIAFLNQTLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPA 60
           MNATSFRKIAFLNQ LISLLDGCKSMFELKRIHALLFTLGISQDE IKSKLLLFSALSPA
Sbjct: 2   MNATSFRKIAFLNQNLISLLDGCKSMFELKRIHALLFTLGISQDEIIKSKLLLFSALSPA 61

Query: 61  RDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLV 120
           RDLDYSYKLILN+PNPTTFNWNTLIR FSNTKNPNPSITVFIKMLQNGVSP+YLTYPFLV
Sbjct: 62  RDLDYSYKLILNLPNPTTFNWNTLIRGFSNTKNPNPSITVFIKMLQNGVSPNYLTYPFLV 121

Query: 121 KATSKLLNQELGMAVHVHIVKVYGE---------------------AMALFER------- 180
           KATSKLLNQELGMA+HVHIVK   E                     A  +F+        
Sbjct: 122 KATSKLLNQELGMALHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMATKNLV 181

Query: 181 -------------------------------------------------------MSFDG 240
                                                                  MSF G
Sbjct: 182 TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSFVG 241

Query: 241 PMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEAL 300
           PMANEVTLVS LCACAHLGALE GRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEAL
Sbjct: 242 PMANEVTLVSVLCACAHLGALERGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEAL 301

Query: 301 TVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXX 360
           TVFRACSLQEADVLIWNAIIGGLATHGLIKE+++LFC+M+MVGIVPDEITYLXXXXXXXX
Sbjct: 302 TVFRACSLQEADVLIWNAIIGGLATHGLIKESLDLFCKMQMVGIVPDEITYLXXXXXXXX 361

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGA 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGA
Sbjct: 362 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGA 421

Query: 421 LLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGV 460
           LLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKN+REAMERKG+
Sbjct: 422 LLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNMREAMERKGM 481

[Close]

BLAST of CsaV3_5G023460 vs. TrEMBL
Match: tr|A0A2C9UQK6|A0A2C9UQK6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G065600 PE=4 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 4.0e-131
Identity = 303/537 (56.42%), Postives = 373/537 (69.46%), Query Frame = 0


Query: 1   MNATSFRKIAFLNQTLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPA 60
           +NA+  R  A L+ TLI++LD CKSM ELK++HAL+ TLG+SQDE+  S++L FSALS +
Sbjct: 2   VNASLLRGNAVLSSTLITILDKCKSMLELKQVHALVITLGLSQDESFVSRILSFSALSDS 61

Query: 61  RDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLV 120
            ++ YS  ++L++ NPT FNWNT+IR +S +KNPN S++VFIKML+ G+ PDYLT+PFL 
Sbjct: 62  GNVHYSLLVLLSLSNPTIFNWNTVIRGYSKSKNPNKSVSVFIKMLRVGILPDYLTFPFLA 121

Query: 121 KATSKLLNQELGMAVHVHIVKV------------------YGEAMALFERMSFD------ 180
           KA+++LLN+ELGMA H HI K                   +GE   L  R  FD      
Sbjct: 122 KASARLLNRELGMAFHAHITKAGYASDRFVSNSLIHMYASFGE--ILHARKVFDGILMKN 181

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 182 SVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRV 241

Query: 241 -GPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHE 300
            GP  NEVT+VS LCACAHLGAL+ GR MHRY+++N LPLT+VL+TSLVDMYAKCGAI E
Sbjct: 242 LGPNPNEVTMVSVLCACAHLGALDKGRTMHRYVIDNGLPLTLVLRTSLVDMYAKCGAIQE 301

Query: 301 ALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXX 360
           A  VFR  S +  DVLIWNA+IGGLATHGL+KE+++LF EM +VG+ PDEITYL    XX
Sbjct: 302 AFNVFRGVSKEPGDVLIWNAMIGGLATHGLVKESLDLFTEMLIVGVKPDEITYLNLLSXX 361

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSML 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CQMP+QPT+SML
Sbjct: 362 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCQMPIQPTASML 421

Query: 421 GALLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERK 453
           GALLSGCM H K D+A+++GR+L+EL+P+HDGRY+GLSNIYA  +RWD A+++REAMER 
Sbjct: 422 GALLSGCMNHRKFDLAEIIGRKLIELEPHHDGRYIGLSNIYAIVRRWDKARSMREAMERM 481

[Close]

BLAST of CsaV3_5G023460 vs. TrEMBL
Match: tr|A0A2I4ECZ1|A0A2I4ECZ1_9ROSI (pentatricopeptide repeat-containing protein At5g08305 OS=Juglans regia OX=51240 GN=LOC108988459 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 1.1e-128
Identity = 305/523 (58.32%), Postives = 365/523 (69.79%), Query Frame = 0


Query: 12  LNQTLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLIL 71
           ++Q LI++LD CK M ELK+IHALL T+G SQD    SK+L  SALS   D++YSY++  
Sbjct: 10  MSQHLITILDQCKCMLELKKIHALLTTIGFSQDYPFVSKVLSLSALSDWGDIEYSYRVFS 69

Query: 72  NVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQEL 131
            + +P TF WNT+IR +SN+KNPNPSI+VF+KML+ GVSPDYLTYPFL+KA+S+LL QEL
Sbjct: 70  QLSSPRTFYWNTIIRGYSNSKNPNPSISVFVKMLRAGVSPDYLTYPFLLKASSRLLKQEL 129

Query: 132 GMAVHVHIVKVYGEA----------------MALFERMSFD------------------- 191
           G AVH H+VK   E+                  ++ R  FD                   
Sbjct: 130 GAAVHAHVVKTGFESDRFIQNSLIHMYASCGYVVYARAVFDGMLARNLVSWXXXXXXXXX 189

Query: 192 ------------------------------------------------GPMANEVTLVSA 251
                                                           GP ANEVT+VS 
Sbjct: 190 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGPKANEVTMVSV 249

Query: 252 LCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEA 311
           L ACAHLGALE GRMMH+Y+V+N LPL + L TSLVDMYAKCGAI EAL VFR   +   
Sbjct: 250 LGACAHLGALEKGRMMHQYVVDNGLPLALALLTSLVDMYAKCGAIEEALAVFRGVPMGRT 309

Query: 312 DVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXXXXXXXXXXXXX 371
           DVLIWNAI+GGLATHG +K+++ LF EM+ VGI PDEITYL XXXXXXXXXXXXXXXXXX
Sbjct: 310 DVLIWNAIVGGLATHGSVKDSLELFSEMQRVGITPDEITYLCXXXXXXXXXXXXXXXXXX 369

Query: 372 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGALLSGCMKHGKL 431
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QMP++PT+SMLGALLSGCM H KL
Sbjct: 370 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQMPMEPTASMLGALLSGCMSHNKL 429

Query: 432 DIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFSFIEV 452
           D+A++VGR+L+EL+P+HDGRY+GLSNIYA +KRWDDA+ +REAMER+GVKKSPGFSF+E+
Sbjct: 430 DLAEIVGRKLIELEPDHDGRYIGLSNIYAVEKRWDDARTMREAMERRGVKKSPGFSFVEI 489

[Close]

BLAST of CsaV3_5G023460 vs. TrEMBL
Match: tr|K7N2R3|K7N2R3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100801523 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 4.6e-127
Identity = 294/516 (56.98%), Postives = 372/516 (72.09%), Query Frame = 0


Query: 8   KIAFLNQTLISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSY 67
           KI  ++  L+SLLD CKS+ ELK++HA++ + G+SQD+   SK+L FSALS + D++YSY
Sbjct: 9   KITNISHNLLSLLDKCKSILELKQLHAVVISCGLSQDDPFISKILCFSALSNSGDINYSY 68

Query: 68  KLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLL 127
           ++   + +PT F+WNT+IR +SN+KNP  S+++F+KML+ GV+PDYLTYPFLVKA+++LL
Sbjct: 69  RVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLL 128

Query: 128 NQELGMAVHVHIVKVYGEA----------------MALFERMSFD--------------- 187
           NQE G++VH HI+K   E+                 +++ +  FD               
Sbjct: 129 NQETGVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDSIQQKNVVSXXXXXX 188

Query: 188 ----------------------------------------------------GPMANEVT 247
                                                               GP ANEVT
Sbjct: 189 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPKANEVT 248

Query: 248 LVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACS 307
           +VS  CACAH+GALE GRM+++YIV+N LPLT+VLQTSLVDMYAKCGAI EAL +FR  S
Sbjct: 249 MVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEALLIFRRVS 308

Query: 308 LQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLXXXXXXXXXXXXXXX 367
             + DVLIWNA+IGGLATHGL++E++ LF EM++VGI PDE+TYLXXXXXXXXXXXXXXX
Sbjct: 309 KSQTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPDEVTYLXXXXXXXXXXXXXXX 368

Query: 368 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQMPVQPTSSMLGALLSGCMK 427
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CQMP +PT+SMLGALLSGC+ 
Sbjct: 369 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXICQMPTEPTASMLGALLSGCIN 428

Query: 428 HGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFS 441
           H  L +A++VGR+L+EL+PNHDGRY+GLSN+YA DKRWDDA+++REAMER+GVKKSPGFS
Sbjct: 429 HRNLALAEIVGRKLIELEPNHDGRYIGLSNMYAVDKRWDDARSMREAMERRGVKKSPGFS 488

The following BLAST results are available for this feature:

BLAST of CsaV3_5G023460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655189.1	5.9e-211	83.58	PREDICTED: pentatricopeptide repeat-containing protein At5g08305 isoform X1 [Cuc...	[more]
XP_008460457.1	6.8e-199	79.15	PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Cucumis melo] ...	[more]
XP_022987941.1	1.9e-164	69.13	pentatricopeptide repeat-containing protein At5g08305 isoform X1 [Cucurbita maxi...	[more]
XP_022942610.1	1.2e-163	69.13	pentatricopeptide repeat-containing protein At5g08305 [Cucurbita moschata]	[more]
XP_023532676.1	2.1e-163	69.32	pentatricopeptide repeat-containing protein At5g08305 isoform X1 [Cucurbita pepo...	[more]

BLAST of CsaV3_5G023460 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08305.1	9.4e-94	48.14	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G06540.1	5.8e-51	27.22	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G22410.1	1.4e-49	25.55	SLOW GROWTH 1	[more]
AT5G66520.1	4.2e-49	28.17	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21065.1	3.5e-48	37.94	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsaV3_5G023460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P0C8Q7\|PP369_ARATH	1.7e-92	48.14	Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9FG16\|PP367_ARATH	1.0e-49	27.22	Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SJZ3\|PP169_ARATH	2.6e-48	25.55	Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop...	[more]
sp\|Q9FJY7\|PP449_ARATH	7.5e-48	28.17	Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX...	[more]
sp\|A8MQA3\|PP330_ARATH	6.3e-47	37.94	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]

BLAST of CsaV3_5G023460 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KMZ3\|A0A0A0KMZ3_CUCSA	3.9e-211	83.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387410 PE=4 SV=1	[more]
tr\|A0A1S3CCZ9\|A0A1S3CCZ9_CUCME	4.5e-199	79.15	pentatricopeptide repeat-containing protein At5g08305 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A2C9UQK6\|A0A2C9UQK6_MANES	4.0e-131	56.42	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G065600 PE=4 SV=...	[more]
tr\|A0A2I4ECZ1\|A0A2I4ECZ1_9ROSI	1.1e-128	58.32	pentatricopeptide repeat-containing protein At5g08305 OS=Juglans regia OX=51240 ...	[more]
tr\|K7N2R3\|K7N2R3_SOYBN	4.6e-127	56.98	Uncharacterized protein OS=Glycine max OX=3847 GN=100801523 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0000049	tRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G023460.1	CsaV3_5G023460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 143..295 e-value: 3.5E-34 score: 120.6 coord: 7..142 e-value: 3.9E-6 score: 28.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 311..406 e-value: 5.7E-8 score: 34.3
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 135..390
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 229..276 e-value: 2.0E-12 score: 47.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 201..221 e-value: 0.47 score: 10.7 coord: 303..326 e-value: 0.015 score: 15.4
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 80..123 e-value: 2.1E-4 score: 21.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 232..265 e-value: 7.2E-7 score: 27.0 coord: 266..298 e-value: 1.6E-4 score: 19.6 coord: 303..326 e-value: 7.9E-4 score: 17.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 365..399 score: 6.928
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 229..263 score: 11.586
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 161..195 score: 6.149
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 77..111 score: 9.876
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 196..226 score: 5.788
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 299..333 score: 7.848
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 264..298 score: 10.83
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 143..432
None	No IPR available	PANTHER	PTHR24015:SF132	SUBFAMILY NOT NAMED	coord: 45..143
None	No IPR available	PANTHER	PTHR24015:SF132	SUBFAMILY NOT NAMED	coord: 143..432
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 45..143

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G023460	CSPI05G14370	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G023460	Cucsa.034390	Cucumber (Gy14) v1	cgycucB010
CsaV3_5G023460	Cla002131	Watermelon (97103) v1	cucwmB406
CsaV3_5G023460	Lsi09G009780	Bottle gourd (USVL1VR-Ls)	cuclsiB353
CsaV3_5G023460	Cla97C03G060320	Watermelon (97103) v2	cucwmbB386
CsaV3_5G023460	Bhi12G001120	Wax gourd	cucwgoB463

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G023460	Silver-seed gourd	carcucB0564
CsaV3_5G023460	Silver-seed gourd	carcucB0869
CsaV3_5G023460	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G023460	Cucurbita maxima (Rimu)	cmacucB0343
CsaV3_5G023460	Cucurbita maxima (Rimu)	cmacucB0887
CsaV3_5G023460	Cucurbita moschata (Rifu)	cmocucB0337
CsaV3_5G023460	Cucurbita moschata (Rifu)	cmocucB0876
CsaV3_5G023460	Cucurbita pepo (Zucchini)	cpecucB0225
CsaV3_5G023460	Cucurbita pepo (Zucchini)	cpecucB0545
CsaV3_5G023460	Melon (DHL92) v3.5.1	cucmeB351
CsaV3_5G023460	Melon (DHL92) v3.6.1	cucmedB343
CsaV3_5G023460	Watermelon (Charleston Gray)	cucwcgB405