CsaV3_5G023440 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G023440
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 17826183 .. 17826488 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTCGCAAATCTCTAAGGAGTCTTTATCAAATTCAATAAATACTACAATAAATATGGCTTCCGCGACGCGGACGTTCCAAAACGCTATAGCGATACAGACGTCGTGGAAGGTTTATGTGACGCTGGCGTCACAGTATCCTTCTGCGACGTCTGCGTTGCAAAATGCTTCCGCGATGTACTGGGCCGTGCGCGAGGAAACTTTCCTCAACGTCGGAACGAGCTGCGTCGCGGAAAGTATCCCTGACATGCTTTCCGCGACTGGAGTTTTCGACGACGTTGCATTGCATTGGGAAAGACCATAA

mRNA sequence

ATGACGTCGCAAATCTCTAAGGAGTCTTTATCAAATTCAATAAATACTACAATAAATATGGCTTCCGCGACGCGGACGTTCCAAAACGCTATAGCGATACAGACGTCGTGGAAGGTTTATGTGACGCTGGCGTCACAGTATCCTTCTGCGACGTCTGCGTTGCAAAATGCTTCCGCGATGTACTGGGCCGTGCGCGAGGAAACTTTCCTCAACGTCGGAACGAGCTGCGTCGCGGAAAGTATCCCTGACATGCTTTCCGCGACTGGAGTTTTCGACGACGTTGCATTGCATTGGGAAAGACCATAA

Coding sequence (CDS)

ATGACGTCGCAAATCTCTAAGGAGTCTTTATCAAATTCAATAAATACTACAATAAATATGGCTTCCGCGACGCGGACGTTCCAAAACGCTATAGCGATACAGACGTCGTGGAAGGTTTATGTGACGCTGGCGTCACAGTATCCTTCTGCGACGTCTGCGTTGCAAAATGCTTCCGCGATGTACTGGGCCGTGCGCGAGGAAACTTTCCTCAACGTCGGAACGAGCTGCGTCGCGGAAAGTATCCCTGACATGCTTTCCGCGACTGGAGTTTTCGACGACGTTGCATTGCATTGGGAAAGACCATAA

Protein sequence

MTSQISKESLSNSINTTINMASATRTFQNAIAIQTSWKVYVTLASQYPSATSALQNASAMYWAVREETFLNVGTSCVAESIPDMLSATGVFDDVALHWERP

Homology

[Close]

BLAST of CsaV3_5G023440 vs. NCBI nr
Match: KGN50988.1 (hypothetical protein Csa_5G387390 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 4.6e-47
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MTSQISKESLSNSINTTINMASATRTFQNAIAIQTSWKVYVTLASQYPSATSALQNASAM 60
           MTSQISKESLSNSINTTINMASATRTFQNAIAIQTSWKVYVTLASQYPSATSALQNASAM
Sbjct: 1   MTSQISKESLSNSINTTINMASATRTFQNAIAIQTSWKVYVTLASQYPSATSALQNASAM 60

Query: 61  YWAVREETFLNVGTSCVAESIPDMLSATGVFDDVALHWERP 102
           YWAVREETFLNVGTSCVAESIPDMLSATGVFDDVALHWERP
Sbjct: 61  YWAVREETFLNVGTSCVAESIPDMLSATGVFDDVALHWERP 101

[Close]

BLAST of CsaV3_5G023440 vs. TrEMBL
Match: tr|A0A0A0KN40|A0A0A0KN40_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387390 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.0e-47
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MTSQISKESLSNSINTTINMASATRTFQNAIAIQTSWKVYVTLASQYPSATSALQNASAM 60
           MTSQISKESLSNSINTTINMASATRTFQNAIAIQTSWKVYVTLASQYPSATSALQNASAM
Sbjct: 1   MTSQISKESLSNSINTTINMASATRTFQNAIAIQTSWKVYVTLASQYPSATSALQNASAM 60

Query: 61  YWAVREETFLNVGTSCVAESIPDMLSATGVFDDVALHWERP 102
           YWAVREETFLNVGTSCVAESIPDMLSATGVFDDVALHWERP
Sbjct: 61  YWAVREETFLNVGTSCVAESIPDMLSATGVFDDVALHWERP 101

The following BLAST results are available for this feature:

BLAST of CsaV3_5G023440 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50988.1	4.6e-47	100.00	hypothetical protein Csa_5G387390 [Cucumis sativus]	[more]

BLAST of CsaV3_5G023440 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G023440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G023440 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KN40\|A0A0A0KN40_CUCSA	3.0e-47	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387390 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G023440.1	CsaV3_5G023440.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G023440	Silver-seed gourd	carcucB0564
CsaV3_5G023440	Silver-seed gourd	carcucB0869
CsaV3_5G023440	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G023440	Cucumber (Gy14) v1	cgycucB010
CsaV3_5G023440	Cucurbita maxima (Rimu)	cmacucB0343
CsaV3_5G023440	Cucurbita maxima (Rimu)	cmacucB0887
CsaV3_5G023440	Cucurbita moschata (Rifu)	cmocucB0337
CsaV3_5G023440	Cucurbita moschata (Rifu)	cmocucB0876
CsaV3_5G023440	Cucurbita pepo (Zucchini)	cpecucB0225
CsaV3_5G023440	Cucurbita pepo (Zucchini)	cpecucB0545
CsaV3_5G023440	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G023440	Bottle gourd (USVL1VR-Ls)	cuclsiB353
CsaV3_5G023440	Melon (DHL92) v3.5.1	cucmeB351
CsaV3_5G023440	Melon (DHL92) v3.6.1	cucmedB343
CsaV3_5G023440	Watermelon (Charleston Gray)	cucwcgB405
CsaV3_5G023440	Watermelon (97103) v1	cucwmB406
CsaV3_5G023440	Watermelon (97103) v2	cucwmbB386
CsaV3_5G023440	Wax gourd	cucwgoB463