CsaV3_5G023400 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G023400
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 17765794 .. 17766225 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGGAGAAGAAGGAGGAGAAGGAAAAGGAGAAGGAGAAGGCGGAGAAGGAGAGCGGAGGATCGAGGCCAAGCGCTCTCGCTTTTCCGGAGGGATATGTTGGCCTGCTGAGACTTGCGTGGAGTCGCTTCGGGGAATTTCTCTCTTTTTCCTTTTTTCTTTTTTCTTTTTTTCTTTTTCTTTTTGCTTCTGTTAAATATAAAATTCCATTTGGTAGTTCTTTTCTAACTATCGACACTATGAACTCACCATGTGGATACGCAACTTGGGCCTTAATACCTCATTCATATATTATGGATCATTCATTTATGGATTTATTGGGTCCTGGCCCTATTCTTCAATCCCCTTCACGTGCAAGGCTGCCTCAAACATATTGCCTTTCGTATATCCACGTATTACAATCTTCTTCTTTCTCTAAACACTTTTAG

mRNA sequence

ATGAAGAAGGAGAAGAAGGAGGAGAAGGAAAAGGAGAAGGAGAAGGCGGAGAAGGAGAGCGGAGGATCGAGGCCAAGCGCTCTCGCTTTTCCGGAGGGATATGTTGGCCTGCTGAGACTTGCTTCTTTTCTAACTATCGACACTATGAACTCACCATGTGGATACGCAACTTGGGCCTTAATACCTCATTCATATATTATGGATCATTCATTTATGGATTTATTGGGTCCTGGCCCTATTCTTCAATCCCCTTCACGTGCAAGGCTGCCTCAAACATATTGCCTTTCGTATATCCACGTATTACAATCTTCTTCTTTCTCTAAACACTTTTAG

Coding sequence (CDS)

ATGAAGAAGGAGAAGAAGGAGGAGAAGGAAAAGGAGAAGGAGAAGGCGGAGAAGGAGAGCGGAGGATCGAGGCCAAGCGCTCTCGCTTTTCCGGAGGGATATGTTGGCCTGCTGAGACTTGCTTCTTTTCTAACTATCGACACTATGAACTCACCATGTGGATACGCAACTTGGGCCTTAATACCTCATTCATATATTATGGATCATTCATTTATGGATTTATTGGGTCCTGGCCCTATTCTTCAATCCCCTTCACGTGCAAGGCTGCCTCAAACATATTGCCTTTCGTATATCCACGTATTACAATCTTCTTCTTTCTCTAAACACTTTTAG

Protein sequence

MKKEKKEEKEKEKEKAEKESGGSRPSALAFPEGYVGLLRLASFLTIDTMNSPCGYATWALIPHSYIMDHSFMDLLGPGPILQSPSRARLPQTYCLSYIHVLQSSSFSKHF
Homology
[Close]
BLAST of CsaV3_5G023400 vs. NCBI nr
Match: KGN50985.1 (hypothetical protein Csa_5G385370 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 3.2e-46
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MKKEXXXXXXXXXXXXXXXXGGSRPSALAFPEGYVGLLRLASFLTIDTMNSPCGYATWAL 60
           MKKEXXXXXXXXXXXXXXXXGGSRPSALAFPEGYVGLLRLASFLTIDTMNSPCGYATWAL
Sbjct: 1   MKKEXXXXXXXXXXXXXXXXGGSRPSALAFPEGYVGLLRLASFLTIDTMNSPCGYATWAL 60

Query: 61  IPHSYIMDHSFMDLLGPGPILQSPSRARLPQTYCLSYIHVLQSSSFSKHF 111
           IPHSYIMDHSFMDLLGPGPILQSPSRARLPQTYCLSYIHVLQSSSFSKHF
Sbjct: 61  IPHSYIMDHSFMDLLGPGPILQSPSRARLPQTYCLSYIHVLQSSSFSKHF 110

[Close]
BLAST of CsaV3_5G023400 vs. TrEMBL
Match: tr|A0A0A0KMY5|A0A0A0KMY5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G385370 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.1e-46
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MKKEXXXXXXXXXXXXXXXXGGSRPSALAFPEGYVGLLRLASFLTIDTMNSPCGYATWAL 60
           MKKEXXXXXXXXXXXXXXXXGGSRPSALAFPEGYVGLLRLASFLTIDTMNSPCGYATWAL
Sbjct: 1   MKKEXXXXXXXXXXXXXXXXGGSRPSALAFPEGYVGLLRLASFLTIDTMNSPCGYATWAL 60

Query: 61  IPHSYIMDHSFMDLLGPGPILQSPSRARLPQTYCLSYIHVLQSSSFSKHF 111
           IPHSYIMDHSFMDLLGPGPILQSPSRARLPQTYCLSYIHVLQSSSFSKHF
Sbjct: 61  IPHSYIMDHSFMDLLGPGPILQSPSRARLPQTYCLSYIHVLQSSSFSKHF 110

The following BLAST results are available for this feature:
BLAST of CsaV3_5G023400 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50985.13.2e-46100.00hypothetical protein Csa_5G385370 [Cucumis sativus][more]
BLAST of CsaV3_5G023400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G023400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G023400 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KMY5|A0A0A0KMY5_CUCSA2.1e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G385370 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G023400.1CsaV3_5G023400.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G023400Silver-seed gourdcarcucB0564
CsaV3_5G023400Silver-seed gourdcarcucB0869
CsaV3_5G023400Cucumber (Gy14) v2cgybcucB232
CsaV3_5G023400Cucumber (Gy14) v1cgycucB010
CsaV3_5G023400Cucurbita maxima (Rimu)cmacucB0343
CsaV3_5G023400Cucurbita maxima (Rimu)cmacucB0887
CsaV3_5G023400Cucurbita moschata (Rifu)cmocucB0337
CsaV3_5G023400Cucurbita moschata (Rifu)cmocucB0876
CsaV3_5G023400Cucurbita pepo (Zucchini)cpecucB0225
CsaV3_5G023400Cucurbita pepo (Zucchini)cpecucB0545
CsaV3_5G023400Wild cucumber (PI 183967)cpicucB284
CsaV3_5G023400Bottle gourd (USVL1VR-Ls)cuclsiB353
CsaV3_5G023400Melon (DHL92) v3.5.1cucmeB351
CsaV3_5G023400Melon (DHL92) v3.6.1cucmedB343
CsaV3_5G023400Watermelon (Charleston Gray)cucwcgB405
CsaV3_5G023400Watermelon (97103) v1cucwmB408
CsaV3_5G023400Watermelon (97103) v1cucwmB406
CsaV3_5G023400Watermelon (97103) v2cucwmbB386
CsaV3_5G023400Wax gourdcucwgoB463