CsaV3_5G023190 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G023190
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionzinc finger BED domain-containing protein RICESLEEPER 2-like
Locationchr5 : 17413634 .. 17417914 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTATTACGAATTTACGCGTCCCTCTCCCTCAGACCCTCCCTTCCTTCCGTCGTTCTCTGCGTCTCCCTTTCCCTCGCAGCTTGCGGAACACCTTTCGCCTCTTCCTCTCCCTCTGCAACCGCCGACATCTCCTTCTTCGTTTGATCTCTCTGCCATCTCCTTCTTTGTCTGATCTCTACGGCATCTCCTTCATCATCTGATTTATCCGTCTCAAATCTGTCTTCTCCTGCATCTTCTTCTTGCGTCTCCTCCTCCGTTTCAAATCCGAGACACATCTATTTGTCCAAAATCGAGACGCATCTCAAATTTCAATCCCTTCGATCTATCTTACTCTCAGTTTGTCTATCTTCAACCGACATCAACTGCCTCTCAAATTTCTTTGATTTTGCACTGTTTAAGCCAAGGTAATTTCTTATGATTTTCTTGCATCTCGAACAAACTAAGAGAAAATAAATCTTTATTCACACATTTGCATCAGTACTTAACAATGTCTGCATGAATTCTTAAATATCCTCTTTATTTATCTTCACAATTTCACATGCTTTCGTATCTGTATAATGGACACAATATTTTTAGGTTGACAGACATATTTATTTTTTCACAATTTCACCATAGTATGTTGACAGTACATATTTATTTTTTGAGTTTGTTGAGACAGTAGCATAAATATTGAAATAGCACAAGTATTGAAGGTTAACACTAGCGTAATTCTATTTTGAATTTGTTGAGACAGTAGCATAAATATTGAAATATTGACAGTAGCATTATTCTATTGAGCTTGTGATTTCGTTGTGGTTGTCTTGGTGTAACTTTGTTGTGGGTGATTGGGTGATCTAACCTTAGTTTTTTATATGTTTAGAACATTTTACAAGTAATGGACAACATAGTGAAACTAGCCCTAGCCCTAGTCCTAGTCCTGCCCCTTCCACTAATAATGATGTGAGTTCAAATAAACCAGCACTACCCGATAAGAAGAGAGCTAGAGTCACTAAGAAGACAACTTTCACTGTATGGGATCACTTCAAAAAGTTGGAAGAGAATAGTTCTAGGTGCACATGCAATTATTGTCATAAAGAATATTGTTATGATACTACCTCATGTGGAACTAGCACATTATGGAAGCACTTAAAAAATCAATGTAAGAAGTACCCATATAAGGAAGTAGAAACATGACAAACTATTTTGACTCTTCAACCTTCCACTGATGGAAAAAGTGGTAGTAATTTTGTGACTACTATTTTTAGTCAACAATTATGTAGAGAAACATGTGCTAAGATGATAATTGTTGATGAGTTGCCATTCAAGTTTATCGAGAATTATGGATTTATACATTTTTGTAGAGTGACTTGTTCTAAGTTTGACCCTTCTTCAAGAGTAACAATTCTCAAAGGGTATGTTTGACAACTGACACATGGACTTCTTTGCAAAATGTTAACTACATGGTACTCACTGCACACTTCATTGATTTAGATTGGGTTTTGCATAAAATGATTTTAAACTTTTCTCAAGTTACTAACCACAAGGATGATACTATTGGAAAGCTTATTGAGAGTTGTTTATTGGAATGGAGGATTGATAAAGTCTTTTCTATAAATGTTGATAATGCAAGTTCGAATGAAGGAGCAATTTCGTATATTAAGAAAAGACTTAGAAGTTGGAAAACCTTAATCTTGGAAGATGAACTGTTACACATGAGGAGTTGTGCCCACATAATTAATTTGATTGTAAATGAAGGATTGAGAGAAATGCATGATTCCATTGCTCGTGTTTGTAATCTTGTACGTTACGTTAGATCATCCCTTAAAAGATTGACAAAGTTTAAAACTTGTGTGGAGCAAGAGAAAATTGATTGAAAAGCTCTTGTTTGTTTAGATGTTCCAACAAGATGGAATTCTACTTATCTTATGCTTGAGCATGCACTTAAATTTGAAAAAGCTTTTCAAATATTAGAGGAATAAGAGTTGGATTATCAAGACTATTTTTCAGAATATGAACATGGGAAGAAGAGGAATGAGCCACCAACTAATTCTGATTGGAAAAATGTTGAAGTGTTTGTCATGTTTTTGAAGATGTTCTACAATGTCACTATAAGATTAATGTCACTAATAAGATTAGTGGTTCTATATATATGACTGCCAATTCTTTTTTTCATGAGATGTGGGGGATTAATGATCTTTTAATTGGTTAGAGCAGTGAATATAATTATATTTTACATAATATGACTATAAATATGAAGTCAAAGTATGACAAGTATTGTGGTTCAATTGAGAAAATTAACAAGCTTGTATTTCTAGTTGTGGTGCTTGATCCTCGATATAAATTGGACTACGTTAACTTTTGATTTGAAAGTATACATGATGATGTTATGGTTAAAGCTCTTGTAAGATTGAAGCTTATTTGATGCGATTGTACAATTTTTACAAATCACAAGTTGATGACTCTGTCTTTCGCAATGATTTGCGTGGTCAAGATGTTGTTTGTGAACAAGTAGAATCAAGTGATAATTTGAGACTATTGAGTTCGAGAGCTACAGTGGAAACTGACGCGTGTTGTAGAGTATTATCACGCTACAAGAGAAAAAGACAAGTACAAAATACTTTAGAATTGAGGAATGATGTTGATCGGTATTTATCTGACCCTTGTGAGGAGTTAAATGATCAGTTTGATGTTCTAACTTGGTGGAAATTGAATGGGGCTAAATACCGAATTCTATCAAAAATTGCTCTAGATAGTTTTGTCGTTCTGGTGTCTACTGCGGCTTCTAAATCTGCATTCAGTACTGGAGGAAGGATTTTGGATTCTTTTAGGAGTTCTTTATCACCTAAAACAGTGGAAGCTTTGATTTGTACACAAAACTGGATTTGTGGCAAAACAACCTTATTGGATCTTTGTCCATAGCCCGAAGGAATGAAAATTTGTGAAAAAATTGAGAACGGTAAGTCTCTAACTTTCTTTTATTTTTACTGAAAATTTTATACTTAAATAGTTATACGACACTTTATAATTTTAATTTGTTTTTTTTAGATAGTATCAAGTCTTCCATCACGTCACAAACATGATATATGGGTTGGGAATTTTCATGGTAAGTTACTAAGTTGGATATTGTATTTTTGTCATTTTATTTATTTTATATATTTTAAACTACTTACTTTGTGTGCTTTTTAAATTTTTAAGACAAATTTGAATGCTTGTAATGCTTGAATGGACTTCAAATTTATATTTAGTTGTATCTTGAACTTTATTATTCATTTAGTATTAAAAATGAACTTCATGAACATTTATGGGTAATTTTTGGATTTATGTATTTTAAGAACTTCGAATTTATTTGTGTTTGTAACTATGAATTTATTTGTGTTTGCAATTTTGAATTTATTTGTGTTTGTATTGAACTATTATATCTTGGTCCCATTGATTTTTGTATTTTATATTATGTGTATAATACATATCTGTTGAGTATATATGTGATGAATGAATCAGGGACTTTTTATTCGTGATATCTAAATGGAATTGAAATCCAATTCACTAGAAATGAACGAAATGATGATAACATTCCTGATGATGAGGTAGTTGGTGAATTTGAAGTGTTCGGGCAGAGAGTACGACCACTAGGGGCGCTAACTTTACAAACTCTATCATCAAAAGAAAAATAGGTTGCACATTGGTACATCCTCAATAGTTGTAAAGAAATAATGAGCTACTGCAAGTATAAATTTCAAACTTCATATTTCTCTCACTATTTAGTGGCAATGGAAGTAGACAATAATTTCTACGGTGTTTTAGATGAAGTGTTGGACTTTCAATATCTGCTGAGATGACGTGTTTGGTTATTCAGGTTTGACACAAGTAACAACAAAAGTCATAGGACACGCTTGGAGTTACAATACAAATCAATCAACACATCGCATTTTTTGTTTGTGGAGGAACCAACCATTCTTGCGATTCAGACACAACAAGATTTTTACCTTGAGTACCCAAAAAATGGTATCAGTTGGAAAGTTCTTCATGTGGTCCAAAATAAACATATATAAATGGAAGATGTTGAGAATGAACAGTTGGATGTACTGAAAATTGTTGTTGGACATTATATGAATGAACACAGTGAGGAGCACACTATGTGACGCTAAACCTACAGTGGTGGAAAGATCAATTGTTTGATATCTTGTTGACGACTTCATAAATGATGATGATGAAAAATTATCTCCTCAAAACTATGAGATACTAGAGAGATATTCATTAAATATGATTTAAATAAAATATTAACCGATTAATTAGTTGGTTTG

mRNA sequence

ATGCGATTGTACAATTTTTACAAATCACAAGTTGATGACTCTGTCTTTCGCAATGATTTGCGTGGTCAAGATGTTGTTTGTGAACAAGTAGAATCAAGTGATAATTTGAGACTATTGAGTTCGAGAGCTACAGTGGAAACTGACGCGTGTTGTAGAGTATTATCACGCTACAAGAGAAAAAGACAAGTACAAAATACTTTAGAATTGAGGAATGATGTTGATCGGTATTTATCTGACCCTTGTGAGGAGTTAAATGATCAGTTTGATGTTCTAACTTGGTGGAAATTGAATGGGGCTAAATACCGAATTCTATCAAAAATTGCTCTAGATAGTTTTGTCGTTCTGGTGTCTACTGCGGCTTCTAAATCTGCATTCAGTACTGGAGGAAGGATTTTGGATTCTTTTAGGAGTTCTTTATCACCTAAAACAGTGGAAGCTTTGATTTGTACACAAAACTGGATTTGTGGCAAAACAACCTTATTGGATCTTTGTCCATAG

Coding sequence (CDS)

ATGCGATTGTACAATTTTTACAAATCACAAGTTGATGACTCTGTCTTTCGCAATGATTTGCGTGGTCAAGATGTTGTTTGTGAACAAGTAGAATCAAGTGATAATTTGAGACTATTGAGTTCGAGAGCTACAGTGGAAACTGACGCGTGTTGTAGAGTATTATCACGCTACAAGAGAAAAAGACAAGTACAAAATACTTTAGAATTGAGGAATGATGTTGATCGGTATTTATCTGACCCTTGTGAGGAGTTAAATGATCAGTTTGATGTTCTAACTTGGTGGAAATTGAATGGGGCTAAATACCGAATTCTATCAAAAATTGCTCTAGATAGTTTTGTCGTTCTGGTGTCTACTGCGGCTTCTAAATCTGCATTCAGTACTGGAGGAAGGATTTTGGATTCTTTTAGGAGTTCTTTATCACCTAAAACAGTGGAAGCTTTGATTTGTACACAAAACTGGATTTGTGGCAAAACAACCTTATTGGATCTTTGTCCATAG

Protein sequence

MRLYNFYKSQVDDSVFRNDLRGQDVVCEQVESSDNLRLLSSRATVETDACCRVLSRYKRKRQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAASKSAFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP
Homology
[Close]
BLAST of CsaV3_5G023190 vs. NCBI nr
Match: XP_024923790.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Ziziphus jujuba])

HSP 1 Score: 144.8 bits (364), Expect = 2.6e-31
Identity = 75/158 (47.47%), Postives = 108/158 (68.35%), Query Frame = 0 

Query: 1   MRLYNFYKSQVDDSVFRNDLRGQDVVCEQVESSDNLRL---LSSRATVETDACCRVLSRY 60
           M LY++YK+              +V+ +  +SS +  L   ++++   E D     +S++
Sbjct: 506 MSLYDWYKA-------------SEVILDGNQSSKDKELESCVTNKKNSEVDINLLRISKF 565

Query: 61  KRKRQVQNTLELRNDVDRYLSDPCEELNDQ-FDVLTWWKLNGAKYRILSKIALDSFVVLV 120
           KRK+  + ++E++NDVDRYL DPCE+++ + FDVL WW++NG KY ILSK+A D F + V
Sbjct: 566 KRKKAAKESIEIKNDVDRYLLDPCEDISKKDFDVLNWWRVNGNKYPILSKLAKDMFAIQV 625

Query: 121 STAASKSAFSTGGRILDSFRSSLSPKTVEALICTQNWI 155
           ST AS+SAFSTGGRILD FRSSL+PK VE L+CTQNW+
Sbjct: 626 STVASESAFSTGGRILDPFRSSLTPKMVEVLVCTQNWL 650

[Close]
BLAST of CsaV3_5G023190 vs. NCBI nr
Match: XP_024046558.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Citrus clementina])

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-27
Identity = 61/103 (59.22%), Postives = 82/103 (79.61%), Query Frame = 0 

Query: 54  LSRYKRKRQVQNTLELRNDVDRYLSDPCEE-LNDQFDVLTWWKLNGAKYRILSKIALDSF 113
           LS++K+K+  ++ +EL+N+VD+YL D CE   +D FD+L WWK+NG KY++LS IA D  
Sbjct: 569 LSKWKKKQLEEDGVELKNEVDKYLLDDCENCFDDSFDLLNWWKVNGGKYKVLSNIAKDIL 628

Query: 114 VVLVSTAASKSAFSTGGRILDSFRSSLSPKTVEALICTQNWIC 156
            + +ST AS+SAFSTGGRILD FR+SLSPK VE+LIC QNW+C
Sbjct: 629 SIPISTVASESAFSTGGRILDPFRASLSPKMVESLICGQNWLC 671

[Close]
BLAST of CsaV3_5G023190 vs. NCBI nr
Match: XP_024041351.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Citrus clementina])

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-27
Identity = 61/103 (59.22%), Postives = 82/103 (79.61%), Query Frame = 0 

Query: 54  LSRYKRKRQVQNTLELRNDVDRYLSDPCEE-LNDQFDVLTWWKLNGAKYRILSKIALDSF 113
           LS++K+K+  ++ +EL+N+VD+YL D CE   +D FD+L WWK+NG KY++LS IA D  
Sbjct: 669 LSKWKKKQLEEDGVELKNEVDKYLLDDCENCFDDSFDLLNWWKVNGGKYKVLSNIAKDIL 728

Query: 114 VVLVSTAASKSAFSTGGRILDSFRSSLSPKTVEALICTQNWIC 156
            + +ST AS+SAFSTGGRILD FR+SLSPK VE+LIC QNW+C
Sbjct: 729 SIPISTVASESAFSTGGRILDPFRASLSPKMVESLICGQNWLC 771

[Close]
BLAST of CsaV3_5G023190 vs. NCBI nr
Match: XP_024950020.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Citrus sinensis] >XP_024950021.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Citrus sinensis] >XP_024956360.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Citrus sinensis])

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-27
Identity = 61/103 (59.22%), Postives = 82/103 (79.61%), Query Frame = 0 

Query: 54  LSRYKRKRQVQNTLELRNDVDRYLSDPCEE-LNDQFDVLTWWKLNGAKYRILSKIALDSF 113
           LS++K+K+  ++ +EL+N+VD+YL D CE   +D FD+L WWK+NG KY++LS IA D  
Sbjct: 222 LSKWKKKQLEEDGVELKNEVDKYLLDDCENCFDDSFDLLNWWKVNGGKYKVLSNIAKDIL 281

Query: 114 VVLVSTAASKSAFSTGGRILDSFRSSLSPKTVEALICTQNWIC 156
            + +ST AS+SAFSTGGRILD FR+SLSPK VE+LIC QNW+C
Sbjct: 282 SIPISTVASESAFSTGGRILDPFRASLSPKMVESLICGQNWLC 324

[Close]
BLAST of CsaV3_5G023190 vs. NCBI nr
Match: XP_022029156.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like [Helianthus annuus] >XP_022029157.1 zinc finger BED domain-containing protein RICESLEEPER 1-like [Helianthus annuus])

HSP 1 Score: 125.2 bits (313), Expect = 2.1e-25
Identity = 74/154 (48.05%), Postives = 101/154 (65.58%), Query Frame = 0 

Query: 2   RLYNFYKSQVDDSVFRNDLR-GQDVVCEQVESSDNLRLLSSRATVETDACCRVLSRYKRK 61
           +LY+FY S+        DL+ G+    ++   S NL  +S   +++     R + +YK  
Sbjct: 174 KLYDFYCSK--------DLKHGKSCTSKK---SHNLGGISESLSIQE----RRMLKYKSH 233

Query: 62  RQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAA 121
            +   T EL +++DRYL D  E + + FD+L WWK+NG KY+IL+K+A D   V VST A
Sbjct: 234 LEAGTTSEL-SELDRYLKDNKEPMYESFDLLHWWKINGEKYKILAKVARDVLAVPVSTVA 293

Query: 122 SKSAFSTGGRILDSFRSSLSPKTVEALICTQNWI 155
           S+SAFSTGGRILD FRSSLSPKTV+AL+CTQNWI
Sbjct: 294 SESAFSTGGRILDPFRSSLSPKTVQALVCTQNWI 311

[Close]
BLAST of CsaV3_5G023190 vs. TAIR10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-14
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 0 

Query: 69  LRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAASKSAFSTG 128
           L++++D+YL +       +FDVL WWK N  KY  LSK+A D   + VS AA    F   
Sbjct: 589 LKSELDQYLDETLLPRVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDME 648

Query: 129 GRILDSFRSSLSPKTVEALICTQNWI 155
            R +D +++SL P+TVEALIC + W+
Sbjct: 649 PREMDEYKTSLRPETVEALICAREWL 674

[Close]
BLAST of CsaV3_5G023190 vs. TAIR10
Match: AT1G18560.1 (BED zinc finger ;hAT family dimerisation domain)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-08
Identity = 29/97 (29.90%), Postives = 54/97 (55.67%), Query Frame = 0 

Query: 58  KRKRQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVS 117
           +RKR+   +  + +++ +YLS+    +  Q DVL WWK+N  +Y  LS +A D   V  +
Sbjct: 555 RRKRRGSMSNNVVDELTQYLSESIVPM--QTDVLDWWKVNSGRYPRLSNMARDFLAVQAT 614

Query: 118 TAASKSAFSTGGRILDSFRSSLSPKTVEALICTQNWI 155
           +AA +  F   G  +D  +  +   + +++IC ++WI
Sbjct: 615 SAAPEEIFCGKGEEIDKQKYCMPHDSTQSVICIRSWI 649

[Close]
BLAST of CsaV3_5G023190 vs. Swiss-Prot
Match: sp|P08770|TRA1_MAIZE (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-18
Identity = 41/84 (48.81%), Postives = 64/84 (76.19%), Query Frame = 0 

Query: 71  NDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAASKSAFSTGGR 130
           N++D+Y+S+P  + + QFD+L+WW+   A+Y IL++IA D   + VST AS+SAFS GGR
Sbjct: 668 NELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGR 727

Query: 131 ILDSFRSSLSPKTVEALICTQNWI 155
           ++D +R+ L  + VEALICT++W+
Sbjct: 728 VVDPYRNRLGSEIVEALICTKDWV 751

[Close]
BLAST of CsaV3_5G023190 vs. Swiss-Prot
Match: sp|P03010|TRAC9_MAIZE (Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-18
Identity = 41/84 (48.81%), Postives = 64/84 (76.19%), Query Frame = 0 

Query: 71  NDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAASKSAFSTGGR 130
           N++D+Y+S+P  + + QFD+L+WW+   A+Y IL++IA D   + VST AS+SAFS GGR
Sbjct: 637 NELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGR 696

Query: 131 ILDSFRSSLSPKTVEALICTQNWI 155
           ++D +R+ L  + VEALICT++W+
Sbjct: 697 VVDPYRNRLGSEIVEALICTKDWV 720

[Close]
BLAST of CsaV3_5G023190 vs. Swiss-Prot
Match: sp|Q9M2N5|DSLE_ARATH (Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-13
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 0 

Query: 69  LRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAASKSAFSTG 128
           L++++D+YL +       +FDVL WWK N  KY  LSK+A D   + VS AA    F   
Sbjct: 589 LKSELDQYLDETLLPRVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDME 648

Query: 129 GRILDSFRSSLSPKTVEALICTQNWI 155
            R +D +++SL P+TVEALIC + W+
Sbjct: 649 PREMDEYKTSLRPETVEALICAREWL 674

[Close]
BLAST of CsaV3_5G023190 vs. Swiss-Prot
Match: sp|B9FJG3|RSLE1_ORYSJ (Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0239150 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.2e-13
Identity = 37/96 (38.54%), Postives = 60/96 (62.50%), Query Frame = 0 

Query: 62  QVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAAS 121
           ++  +   ++++++YL +       +FD+L WWKLN  KY  LSK+A D   + +S  +S
Sbjct: 607 EIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKYPTLSKMARDILAIPMSMVSS 666

Query: 122 -KSAFS--TGGRILDSFRSSLSPKTVEALICTQNWI 155
             S FS  TG R+LD +RSS  P+ VEAL+C ++W+
Sbjct: 667 GNSIFSAGTGTRMLDDYRSSSRPEIVEALVCAKDWL 702

[Close]
BLAST of CsaV3_5G023190 vs. Swiss-Prot
Match: sp|Q6AVI0|RSLE2_ORYSJ (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 36/96 (37.50%), Postives = 61/96 (63.54%), Query Frame = 0 

Query: 62  QVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAAS 121
           ++  +   ++++++YL +       +FD+L WWKLN  K+  LS++A D   + +S  +S
Sbjct: 607 EIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKFPTLSRMARDILAIPMSMVSS 666

Query: 122 -KSAFS--TGGRILDSFRSSLSPKTVEALICTQNWI 155
             S FS  TG R+LD +RSSL P+ VEAL+C ++W+
Sbjct: 667 GNSIFSAGTGTRMLDDYRSSLRPEIVEALVCAKDWL 702

[Close]
BLAST of CsaV3_5G023190 vs. TrEMBL
Match: tr|M5WWJ8|M5WWJ8_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa022981mg PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = 0 

Query: 46  ETDACCR----VLSRYKRKRQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKY 105
           E D+ CR    ++ ++K+ +Q    + + ++VDRYL DP E ++++FD+L WW++NG KY
Sbjct: 458 ENDSTCRKRKTMMEKWKKIQQESENVVVTHEVDRYLLDPLESIDEEFDILRWWRINGLKY 517

Query: 106 RILSKIALDSFVVLVSTAASKSAFSTGGRILDSFRSSLSPKTVEALICTQNWI 155
             L+ IA D   +  ST AS+S FST GR++DSFRSSLSP+ VEALIC+QNWI
Sbjct: 518 PTLASIAKDLLAIPTSTIASESCFSTSGRVIDSFRSSLSPRMVEALICSQNWI 570

[Close]
BLAST of CsaV3_5G023190 vs. TrEMBL
Match: tr|M5VL54|M5VL54_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa026648m1g PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.6e-24
Identity = 56/113 (49.56%), Postives = 80/113 (70.80%), Query Frame = 0 

Query: 46  ETDACCR----VLSRYKRKRQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKY 105
           E D  CR    ++ ++K+ +Q    + + ++VDRYL DP E ++++FD+L WW++NG KY
Sbjct: 71  ENDPTCRKRKTMMEKWKKIQQESENVVITHEVDRYLLDPLESIDEEFDILGWWRINGLKY 130

Query: 106 RILSKIALDSFVVLVSTAASKSAFSTGGRILDSFRSSLSPKTVEALICTQNWI 155
             L+ IA D   +  ST AS+S FST GR++DSFRSSLSP+ VEALIC+QNWI
Sbjct: 131 PTLASIAKDVLAIPTSTIASESCFSTSGRVIDSFRSSLSPRMVEALICSQNWI 183

[Close]
BLAST of CsaV3_5G023190 vs. TrEMBL
Match: tr|M5W6Y9|M5W6Y9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa016227m2g PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.4e-24
Identity = 53/98 (54.08%), Postives = 77/98 (78.57%), Query Frame = 0 

Query: 57  YKRKRQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLV 116
           ++++ Q  + + L +++DRY++DP E++ D+FDVL WWKLNG KY  L+ IA D   + V
Sbjct: 447 WRKETQANDVVVLEHEIDRYITDPIEDVVDEFDVLKWWKLNGVKYPGLALIAKDVLAIPV 506

Query: 117 STAASKSAFSTGGRILDSFRSSLSPKTVEALICTQNWI 155
           ST AS+S FSTGGR+++SFR+SL+PK VEALIC+QNW+
Sbjct: 507 STVASESCFSTGGRVINSFRASLTPKIVEALICSQNWL 544

[Close]
BLAST of CsaV3_5G023190 vs. TrEMBL
Match: tr|M5X1N0|M5X1N0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa024136mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.9e-24
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = 0 

Query: 59  RKRQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVST 118
           ++ Q  NT+ L ++VDRYL+DP E++   FD+L WWKLNG KY  LS IA D   + VST
Sbjct: 617 KESQASNTMILEHEVDRYLTDPIEKMVPNFDILKWWKLNGVKYPSLSLIAKDVLAIPVST 676

Query: 119 AASKSAFSTGGRILDSFRSSLSPKTVEALICTQNWI 155
            AS+S FST GR+++SFR+SL+PK VEALIC+QNW+
Sbjct: 677 VASESCFSTSGRVINSFRASLTPKIVEALICSQNWL 712

[Close]
BLAST of CsaV3_5G023190 vs. TrEMBL
Match: tr|A0A2K1Y328|A0A2K1Y328_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G083900v3 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.7e-24
Identity = 66/155 (42.58%), Postives = 96/155 (61.94%), Query Frame = 0 

Query: 1   MRLYNFYKSQVDDSVFRNDLRGQDVVCEQVESSDNLRLLSSRATVETDACCRVLSRYKRK 60
           +RL+  Y + VD++V          V   V +S N  +      V  D    + S++K+ 
Sbjct: 543 LRLFEHYMN-VDENV---------EVVHGVGTSINENVNVDLMVVNDDMLDDLASQFKKH 602

Query: 61  RQVQNTLELRNDVDRYLSDPCEELND-QFDVLTWWKLNGAKYRILSKIALDSFVVLVSTA 120
            + +  ++ +N+V+RYL D CE+ ND + D+L WW+ N  KY+ILSK+A    V+ VST 
Sbjct: 603 LEEEGGVQKKNEVERYLGDDCEDPNDFKLDILGWWRCNATKYKILSKVAQHVLVIPVSTV 662

Query: 121 ASKSAFSTGGRILDSFRSSLSPKTVEALICTQNWI 155
            S++AFSTGGRILD FRSSLSP TV+AL+C QNW+
Sbjct: 663 VSEAAFSTGGRILDPFRSSLSPSTVQALVCCQNWL 687

The following BLAST results are available for this feature:
BLAST of CsaV3_5G023190 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_024923790.12.6e-3147.47zinc finger BED domain-containing protein RICESLEEPER 2-like [Ziziphus jujuba][more]
XP_024046558.12.3e-2759.22zinc finger BED domain-containing protein RICESLEEPER 2-like [Citrus clementina][more]
XP_024041351.12.3e-2759.22zinc finger BED domain-containing protein RICESLEEPER 2-like [Citrus clementina][more]
XP_024950020.12.3e-2759.22zinc finger BED domain-containing protein RICESLEEPER 2-like [Citrus sinensis] >... [more]
XP_022029156.12.1e-2548.05zinc finger BED domain-containing protein RICESLEEPER 1-like [Helianthus annuus]... [more]
BLAST of CsaV3_5G023190 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G42170.11.6e-1443.02BED zinc finger ;hAT family dimerisation domain[more]
AT1G18560.13.7e-0829.90BED zinc finger ;hAT family dimerisation domain[more]
BLAST of CsaV3_5G023190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P08770|TRA1_MAIZE1.0e-1848.81Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2[more]
sp|P03010|TRAC9_MAIZE1.0e-1848.81Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1[more]
sp|Q9M2N5|DSLE_ARATH2.8e-1343.02Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=... [more]
sp|B9FJG3|RSLE1_ORYSJ8.2e-1338.54Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. j... [more]
sp|Q6AVI0|RSLE2_ORYSJ1.1e-1237.50Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. j... [more]
BLAST of CsaV3_5G023190 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|M5WWJ8|M5WWJ8_PRUPE1.5e-2449.56Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa022981m... [more]
tr|M5VL54|M5VL54_PRUPE2.6e-2449.56Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa026648m... [more]
tr|M5W6Y9|M5W6Y9_PRUPE3.4e-2454.08Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa016227m... [more]
tr|M5X1N0|M5X1N0_PRUPE5.9e-2457.29Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa024136m... [more]
tr|A0A2K1Y328|A0A2K1Y328_POPTR7.7e-2442.58Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G083900v3 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR008906HATC_C_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G023190.1CsaV3_5G023190.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 73..154
e-value: 3.7E-25
score: 87.4
NoneNo IPR availablePANTHERPTHR23272:SF54SUBFAMILY NOT NAMEDcoord: 36..155
NoneNo IPR availablePANTHERPTHR23272BED FINGER-RELATEDcoord: 36..155
IPR012337Ribonuclease H-like superfamilySUPERFAMILYSSF53098Ribonuclease H-likecoord: 21..154

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G023190CSPI05G14120Wild cucumber (PI 183967)cpicucB284
CsaV3_5G023190Cucsa.248500Cucumber (Gy14) v1cgycucB377
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G023190Silver-seed gourdcarcucB0869
CsaV3_5G023190Cucumber (Gy14) v2cgybcucB232
CsaV3_5G023190Cucurbita maxima (Rimu)cmacucB0343
CsaV3_5G023190Cucurbita maxima (Rimu)cmacucB0887
CsaV3_5G023190Cucurbita moschata (Rifu)cmocucB0337
CsaV3_5G023190Cucurbita moschata (Rifu)cmocucB0876
CsaV3_5G023190Cucurbita pepo (Zucchini)cpecucB0225
CsaV3_5G023190Cucurbita pepo (Zucchini)cpecucB0545
CsaV3_5G023190Bottle gourd (USVL1VR-Ls)cuclsiB349
CsaV3_5G023190Melon (DHL92) v3.5.1cucmeB351
CsaV3_5G023190Melon (DHL92) v3.6.1cucmedB343
CsaV3_5G023190Watermelon (Charleston Gray)cucwcgB405
CsaV3_5G023190Watermelon (97103) v1cucwmB408
CsaV3_5G023190Watermelon (97103) v2cucwmbB386
CsaV3_5G023190Wax gourdcucwgoB463