CsaV3_5G023040 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G023040
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 17162220 .. 17162402 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTCCCCGCTGATGTTAAAAATTGCAGCTCAATAGAAGTCCCGGGATGGGGCTATTATGAGGAAGATATATACCACCAGTTGTTTAGCACTGAAGAATTCTTTAAAGATGAATTAGAGTTACTTGAAAAAGTGAATGCCATGTCTGGTGAAAGGATGTTTGAGCCTTTGGACCTGTAA

mRNA sequence

ATGAAACTCCCCGCTGATGTTAAAAATTGCAGCTCAATAGAAGTCCCGGGATGGGGCTATTATGAGGAAGATATATACCACCAGTTGTTTAGCACTGAAGAATTCTTTAAAGATGAATTAGAGTTACTTGAAAAAGTGAATGCCATGTCTGGTGAAAGGATGTTTGAGCCTTTGGACCTGTAA

Coding sequence (CDS)

ATGAAACTCCCCGCTGATGTTAAAAATTGCAGCTCAATAGAAGTCCCGGGATGGGGCTATTATGAGGAAGATATATACCACCAGTTGTTTAGCACTGAAGAATTCTTTAAAGATGAATTAGAGTTACTTGAAAAAGTGAATGCCATGTCTGGTGAAAGGATGTTTGAGCCTTTGGACCTGTAA

Protein sequence

MKLPADVKNCSSIEVPGWGYYEEDIYHQLFSTEEFFKDELELLEKVNAMSGERMFEPLDL

Homology

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BLAST of CsaV3_5G023040 vs. NCBI nr
Match: KGN50950.1 (hypothetical protein Csa_5G365660 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 7.0e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MKLPADVKNCSSIEVPGWGYYEEDIYHQLFSTEEFFKDELELLEKVNAMSGERMFEPLDL 60
          MKLPADVKNCSSIEVPGWGYYEEDIYHQLFSTEEFFKDELELLEKVNAMSGERMFEPLDL
Sbjct: 1  MKLPADVKNCSSIEVPGWGYYEEDIYHQLFSTEEFFKDELELLEKVNAMSGERMFEPLDL 60

[Close]

BLAST of CsaV3_5G023040 vs. TrEMBL
Match: tr|A0A0A0KMT5|A0A0A0KMT5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G365660 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.7e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MKLPADVKNCSSIEVPGWGYYEEDIYHQLFSTEEFFKDELELLEKVNAMSGERMFEPLDL 60
          MKLPADVKNCSSIEVPGWGYYEEDIYHQLFSTEEFFKDELELLEKVNAMSGERMFEPLDL
Sbjct: 1  MKLPADVKNCSSIEVPGWGYYEEDIYHQLFSTEEFFKDELELLEKVNAMSGERMFEPLDL 60

The following BLAST results are available for this feature:

BLAST of CsaV3_5G023040 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50950.1	7.0e-27	100.00	hypothetical protein Csa_5G365660 [Cucumis sativus]	[more]

BLAST of CsaV3_5G023040 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G023040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G023040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KMT5\|A0A0A0KMT5_CUCSA	4.7e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G365660 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G023040.1	CsaV3_5G023040.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G023040	MELO3C003013	Melon (DHL92) v3.5.1	cucmeB351

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G023040	Wax gourd	cucwgoB463
CsaV3_5G023040	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G023040	Cucumber (Gy14) v1	cgycucB377
CsaV3_5G023040	Cucurbita maxima (Rimu)	cmacucB0877
CsaV3_5G023040	Cucurbita pepo (Zucchini)	cpecucB0530
CsaV3_5G023040	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G023040	Bottle gourd (USVL1VR-Ls)	cuclsiB349
CsaV3_5G023040	Melon (DHL92) v3.6.1	cucmedB343
CsaV3_5G023040	Watermelon (Charleston Gray)	cucwcgB405
CsaV3_5G023040	Watermelon (97103) v2	cucwmbB386