CsaV3_5G020800 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G020800
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUbiquitin-protein ligase, putative
Locationchr5 : 15937926 .. 15939932 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTGATACCATAGCCAGTGTAGGGGAAGATGAATGGAGGGTGCTATGAGACTAGTTAAGACTTATATGTATCCTAATTTTAGTAATATATAAAATTGAGAGAATTTCCTTTGATTTTCAGGAACAAGGATGAATAATCAATGAAAAGGTTTATCCATGCAAGCTTCAAACCAAAGTCAAGGATGTCGATCCTTCCAGGGGAGTCCAAAGTTCCAAGATTGTTTATCCATGCATCATTTTGTCGATCTACTAAGATTAAATTGTCTCGTTGTAGTTGCAAGACTGGAACAATAGACGGCAGTTTACACCACCCAGTGACTTCCATGCTGACGCGATGAATGATTATTTCATTTCTCAGGTAATTGTTCTCAATGAATGTTTTGGTTCTAACGACCTGCTATCTGATCGTAATTCTAATTATTTACTTGGCCTTGTTTCTTTGTAGGCAGTGATAGAAAATACCAGAGCAAATGATATACACAAGCGAGTTCCCTTTTTAGTACCGCTTACTAGCAGGGTTAAGATTTTCACTGTAAGCAAGTTATTTTTTTGGTTTCCTTATCCACAATATTGAATTTCTTGGATGACTGTTAGTTATAGAAATATGTAAGATATTTTTTATTTATGGTTACTTTCTCTATAACTCATTTCACAGACACAACTAGCAGCAGCTAGGCAAATGAATGGATCTCTTGCTGTTTTTGCCAGAAACCGGTTTAGAATTCGACGAAATCATATATTGGAAGATGCTTTCAGTCAGATGAGTGCATTGTCTGAAGTTGATCTTCGAGGATCGGTAATTTCAGACTTCCATGATTTATGAAAAATGACATTGTTATCTTACTTTTTTCTATCTTTTTCTTTGCCCTCGTGAAAACGACCCCATCCCTCTTCTGCATCCTATAGTTGCAGAGTTACTTGTAATTGTTTATTAGTTTTTTCTTGTTTGTGTTGGGTCAATTGCTTCACTTTTCTGCATGCAGATACGTGTGTCTTTTGTTAATGAATTTGGAGTTGAGGAGGCAGGAATTGATGGTGGTGGTATTTTTAAAGATGTCATGGAGAACATTACACAGGCAGCCTTTGACGTGCAGTATGGTTTATTTAAG

mRNA sequence

ATGAATGATTATTTCATTTCTCAGGCAGTGATAGAAAATACCAGAGCAAATGATATACACAAGCGAGTTCCCTTTTTAGTACCGCTTACTAGCAGGGTTAAGATTTTCACTACACAACTAGCAGCAGCTAGGCAAATGAATGGATCTCTTGCTGTTTTTGCCAGAAACCGGTTTAGAATTCGACGAAATCATATATTGGAAGATGCTTTCAGTCAGATGAGTGCATTGTCTGAAGTTGATCTTCGAGGATCGATACGTGTGTCTTTTGTTAATGAATTTGGAGTTGAGGAGGCAGGAATTGATGGTGGTGGTATTTTTAAAGATGTCATGGAGAACATTACACAGGCAGCCTTTGACGTGCAGTATGGTTTATTTAAG

Coding sequence (CDS)

ATGAATGATTATTTCATTTCTCAGGCAGTGATAGAAAATACCAGAGCAAATGATATACACAAGCGAGTTCCCTTTTTAGTACCGCTTACTAGCAGGGTTAAGATTTTCACTACACAACTAGCAGCAGCTAGGCAAATGAATGGATCTCTTGCTGTTTTTGCCAGAAACCGGTTTAGAATTCGACGAAATCATATATTGGAAGATGCTTTCAGTCAGATGAGTGCATTGTCTGAAGTTGATCTTCGAGGATCGATACGTGTGTCTTTTGTTAATGAATTTGGAGTTGAGGAGGCAGGAATTGATGGTGGTGGTATTTTTAAAGATGTCATGGAGAACATTACACAGGCAGCCTTTGACGTGCAGTATGGTTTATTTAAG

Protein sequence

MNDYFISQAVIENTRANDIHKRVPFLVPLTSRVKIFTTQLAAARQMNGSLAVFARNRFRIRRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDVQYGLFK
Homology
[Close]
BLAST of CsaV3_5G020800 vs. NCBI nr
Match: XP_011655439.1 (PREDICTED: E3 ubiquitin-protein ligase UPL6-like [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 2.0e-60
Identity = 123/126 (97.62%), Postives = 124/126 (98.41%), Query Frame = 0 

Query: 1   MNDYFISQAVIENTRANDIHKRVPFLVPLTSRVKIFTTQLAAARQMNGSLAVFARNRFRI 60
           MNDYFISQAVIENTRANDIHKRVPFLVP TSRVKIFTTQLAAARQ NGSLAVFARNRFRI
Sbjct: 1   MNDYFISQAVIENTRANDIHKRVPFLVPFTSRVKIFTTQLAAARQRNGSLAVFARNRFRI 60

Query: 61  RRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDV 120
           RRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENIT+AAFDV
Sbjct: 61  RRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITRAAFDV 120

Query: 121 QYGLFK 127
           QYGLFK
Sbjct: 121 QYGLFK 126

[Close]
BLAST of CsaV3_5G020800 vs. NCBI nr
Match: XP_011656310.1 (PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis sativus])

HSP 1 Score: 237.7 bits (605), Expect = 2.2e-59
Identity = 121/126 (96.03%), Postives = 123/126 (97.62%), Query Frame = 0 

Query: 1   MNDYFISQAVIENTRANDIHKRVPFLVPLTSRVKIFTTQLAAARQMNGSLAVFARNRFRI 60
           +NDYFISQAVIENTRANDIHKRVPFLVP TSRVKIFTTQLAAARQ NGSLAVFARNRFRI
Sbjct: 619 VNDYFISQAVIENTRANDIHKRVPFLVPFTSRVKIFTTQLAAARQRNGSLAVFARNRFRI 678

Query: 61  RRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDV 120
           RRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKD MENIT+AAFDV
Sbjct: 679 RRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDFMENITRAAFDV 738

Query: 121 QYGLFK 127
           QYGLFK
Sbjct: 739 QYGLFK 744

[Close]
BLAST of CsaV3_5G020800 vs. NCBI nr
Match: XP_008458320.1 (PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis melo])

HSP 1 Score: 223.4 bits (568), Expect = 4.3e-55
Identity = 115/126 (91.27%), Postives = 118/126 (93.65%), Query Frame = 0 

Query: 1   MNDYFISQAVIENTRANDIHKRVPFLVPLTSRVKIFTTQLAAARQMNGSLAVFARNRFRI 60
           +NDYFISQAVIENTRANDI KR PFLVP TSRVKIFT+QLAAARQ NGS  VFARNRFRI
Sbjct: 616 VNDYFISQAVIENTRANDILKRAPFLVPFTSRVKIFTSQLAAARQRNGSHVVFARNRFRI 675

Query: 61  RRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDV 120
           RRNHILEDAFSQMSALSE DLRGSIRVSFVNEFGVEEAGIDGGGIFKD MENIT+AAFDV
Sbjct: 676 RRNHILEDAFSQMSALSEDDLRGSIRVSFVNEFGVEEAGIDGGGIFKDFMENITRAAFDV 735

Query: 121 QYGLFK 127
           QYGLFK
Sbjct: 736 QYGLFK 741

[Close]
BLAST of CsaV3_5G020800 vs. NCBI nr
Match: XP_022138444.1 (E3 ubiquitin-protein ligase UPL6 [Momordica charantia])

HSP 1 Score: 220.7 bits (561), Expect = 2.8e-54
Identity = 113/126 (89.68%), Postives = 119/126 (94.44%), Query Frame = 0 

Query: 1   MNDYFISQAVIENTRANDIHKRVPFLVPLTSRVKIFTTQLAAARQMNGSLAVFARNRFRI 60
           +NDYFISQAVIENTRANDI KR PFLVP TSRVKIFT+QLAAARQ +GS AVFARNRFRI
Sbjct: 616 VNDYFISQAVIENTRANDILKRAPFLVPFTSRVKIFTSQLAAARQSHGSHAVFARNRFRI 675

Query: 61  RRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDV 120
           RRNHILEDA++QMSALSE DLRGSIRVSFVNEFGVEEAGIDGGGIFKD MENIT+AAFDV
Sbjct: 676 RRNHILEDAYNQMSALSEDDLRGSIRVSFVNEFGVEEAGIDGGGIFKDFMENITRAAFDV 735

Query: 121 QYGLFK 127
           QYGLFK
Sbjct: 736 QYGLFK 741

[Close]
BLAST of CsaV3_5G020800 vs. NCBI nr
Match: XP_022958808.1 (E3 ubiquitin-protein ligase UPL6 isoform X1 [Cucurbita moschata])

HSP 1 Score: 218.0 bits (554), Expect = 1.8e-53
Identity = 112/126 (88.89%), Postives = 118/126 (93.65%), Query Frame = 0 

Query: 1   MNDYFISQAVIENTRANDIHKRVPFLVPLTSRVKIFTTQLAAARQMNGSLAVFARNRFRI 60
           +NDYFISQAVIENTRA+DI K+ PFLVP TSRVKIFT+QL AARQ NGS AVFARNRFRI
Sbjct: 616 VNDYFISQAVIENTRAHDILKQAPFLVPFTSRVKIFTSQLTAARQRNGSHAVFARNRFRI 675

Query: 61  RRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDV 120
           RR+HILEDAFSQMSALSE DLRGSIRVSFVNEFGVEEAGIDGGGIFKD MENIT+AAFDV
Sbjct: 676 RRDHILEDAFSQMSALSEDDLRGSIRVSFVNEFGVEEAGIDGGGIFKDFMENITRAAFDV 735

Query: 121 QYGLFK 127
           QYGLFK
Sbjct: 736 QYGLFK 741

[Close]
BLAST of CsaV3_5G020800 vs. TAIR10
Match: AT3G17205.1 (ubiquitin protein ligase 6)

HSP 1 Score: 196.1 bits (497), Expect = 1.3e-50
Identity = 98/126 (77.78%), Postives = 111/126 (88.10%), Query Frame = 0 

Query: 1   MNDYFISQAVIENTRANDIHKRVPFLVPLTSRVKIFTTQLAAARQMNGSLAVFARNRFRI 60
           +N+YFISQA++E TRAN I  + PFL+P TSRVKIFTTQLA ARQ +GS  +FARNRFRI
Sbjct: 612 VNEYFISQAIMEGTRANYILMQAPFLIPFTSRVKIFTTQLATARQSHGSQGIFARNRFRI 671

Query: 61  RRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDV 120
           RR+HILEDA++QMSALSE DLR SIRV+FVNE GVEEAGIDGGGIFKD ME IT+AAFDV
Sbjct: 672 RRDHILEDAYNQMSALSEDDLRSSIRVTFVNELGVEEAGIDGGGIFKDFMEKITRAAFDV 731

Query: 121 QYGLFK 127
           QYGLFK
Sbjct: 732 QYGLFK 737

[Close]
BLAST of CsaV3_5G020800 vs. TAIR10
Match: AT3G53090.1 (ubiquitin-protein ligase 7)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-14
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 0 

Query: 24  PFLVPLTSRVKIFTTQLA---AARQMNGSL-AVFARN-RFRIRRNHILEDAFSQMSALSE 83
           P + P   RV +F   ++   A+R+M G + A  AR+    +RR H++ED F Q++++  
Sbjct: 737 PHVFPFEERVHVFREFISKDKASRKMAGEVDAPGARSIEIVVRRGHVVEDGFQQLNSIGS 796

Query: 84  VDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDVQYGLF 126
             L+ SI VSFVNE G+ EAG+D GG+ K+ + +IT+AAF  +YGLF
Sbjct: 797 -RLKSSIHVSFVNESGLPEAGLDYGGLSKEFLTDITKAAFATEYGLF 842

[Close]
BLAST of CsaV3_5G020800 vs. Swiss-Prot
Match: sp|Q8RWB8|UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana OX=3702 GN=UPL6 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.4e-49
Identity = 98/126 (77.78%), Postives = 111/126 (88.10%), Query Frame = 0 

Query: 1   MNDYFISQAVIENTRANDIHKRVPFLVPLTSRVKIFTTQLAAARQMNGSLAVFARNRFRI 60
           +N+YFISQA++E TRAN I  + PFL+P TSRVKIFTTQLA ARQ +GS  +FARNRFRI
Sbjct: 612 VNEYFISQAIMEGTRANYILMQAPFLIPFTSRVKIFTTQLATARQSHGSQGIFARNRFRI 671

Query: 61  RRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDV 120
           RR+HILEDA++QMSALSE DLR SIRV+FVNE GVEEAGIDGGGIFKD ME IT+AAFDV
Sbjct: 672 RRDHILEDAYNQMSALSEDDLRSSIRVTFVNELGVEEAGIDGGGIFKDFMEKITRAAFDV 731

Query: 121 QYGLFK 127
           QYGLFK
Sbjct: 732 QYGLFK 737

[Close]
BLAST of CsaV3_5G020800 vs. Swiss-Prot
Match: sp|Q80U95|UBE3C_MOUSE (Ubiquitin-protein ligase E3C OS=Mus musculus OX=10090 GN=Ube3c PE=1 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 6.7e-15
Identity = 45/117 (38.46%), Postives = 67/117 (57.26%), Query Frame = 0 

Query: 11  IENTRANDIHKRVPFLVPLTSRVKIFTTQLAAARQ-MNGSLAVFARNRFRIRRNHILEDA 70
           +   R   I   +PF+VP   RVKIF   + A +Q + G           IRRN+I EDA
Sbjct: 677 VSEERQLAILTELPFVVPFEERVKIFQRLIYADKQEVQGDGPFLDGINVTIRRNYIYEDA 736

Query: 71  FSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDVQYGLFK 127
           + ++S  +E DL+  IRV  +N  G++EAGIDGGGIF++ +  + ++ F+   G FK
Sbjct: 737 YDKLSPENEPDLKKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFNPNQGFFK 793

[Close]
BLAST of CsaV3_5G020800 vs. Swiss-Prot
Match: sp|Q15386|UBE3C_HUMAN (Ubiquitin-protein ligase E3C OS=Homo sapiens OX=9606 GN=UBE3C PE=1 SV=3)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-14
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 0 

Query: 23  VPFLVPLTSRVKIFTTQLAAARQ-MNGSLAVFARNRFRIRRNHILEDAFSQMSALSEVDL 82
           +PF+VP   RVKIF   + A +Q + G           IRRN+I EDA+ ++S  +E DL
Sbjct: 689 LPFVVPFEERVKIFQRLIYADKQEVQGDGPFLDGINVTIRRNYIYEDAYDKLSPENEPDL 748

Query: 83  RGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDVQYGLFK 127
           +  IRV  +N  G++EAGIDGGGIF++ +  + ++ F+   G FK
Sbjct: 749 KKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFNPNQGFFK 793

[Close]
BLAST of CsaV3_5G020800 vs. Swiss-Prot
Match: sp|Q7Z3V4|UBE3B_HUMAN (Ubiquitin-protein ligase E3B OS=Homo sapiens OX=9606 GN=UBE3B PE=1 SV=3)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-14
Identity = 43/119 (36.13%), Postives = 69/119 (57.98%), Query Frame = 0 

Query: 12  ENTRANDIHKRVPFLVPLTSRVKIFTTQLAAARQMNGSLAVFARN----RFRIRRNHILE 71
           +  RA  I + +P ++P  +RV +F T +   ++  G +   + +       IRR+ +LE
Sbjct: 633 DRKRAQLILQYIPHVIPHKNRVLLFRTMVTKEKEKLGLVETSSASPHVTHITIRRSRMLE 692

Query: 72  DAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDVQYGLFK 127
           D + Q+  LS+  ++G IRV FVN+ GV+EAGID  G+FK+ +E I +  FD    LFK
Sbjct: 693 DGYEQLRQLSQHAMKGVIRVKFVNDLGVDEAGIDQDGVFKEFLEEIIKRVFDPALNLFK 751

[Close]
BLAST of CsaV3_5G020800 vs. Swiss-Prot
Match: sp|Q9ES34|UBE3B_MOUSE (Ubiquitin-protein ligase E3B OS=Mus musculus OX=10090 GN=Ube3b PE=1 SV=3)

HSP 1 Score: 79.0 bits (193), Expect = 4.3e-14
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = 0 

Query: 12  ENTRANDIHKRVPFLVPLTSRVKIFTTQLAAARQMNGSLAVFARN----RFRIRRNHILE 71
           +  RA  + + +P +VP  +RV +F   +   ++  G +   + +       IRR+ +LE
Sbjct: 635 DRRRAQLVLQHIPHVVPHKNRVLLFRNMVIKEKEKLGLVETSSASPHVTHITIRRSRMLE 694

Query: 72  DAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDVQYGLFK 127
           D + Q+  LS+  ++G IRV FVN+ GV+EAGID  G+FK+ +E I +  FD    LFK
Sbjct: 695 DGYEQLRQLSQHAMKGVIRVKFVNDLGVDEAGIDQDGVFKEFLEEIIKRVFDPALNLFK 753

[Close]
BLAST of CsaV3_5G020800 vs. TrEMBL
Match: tr|A0A1S3C746|A0A1S3C746_CUCME (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 OS=Cucumis melo OX=3656 GN=LOC103497770 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.9e-55
Identity = 115/126 (91.27%), Postives = 118/126 (93.65%), Query Frame = 0 

Query: 1   MNDYFISQAVIENTRANDIHKRVPFLVPLTSRVKIFTTQLAAARQMNGSLAVFARNRFRI 60
           +NDYFISQAVIENTRANDI KR PFLVP TSRVKIFT+QLAAARQ NGS  VFARNRFRI
Sbjct: 616 VNDYFISQAVIENTRANDILKRAPFLVPFTSRVKIFTSQLAAARQRNGSHVVFARNRFRI 675

Query: 61  RRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDV 120
           RRNHILEDAFSQMSALSE DLRGSIRVSFVNEFGVEEAGIDGGGIFKD MENIT+AAFDV
Sbjct: 676 RRNHILEDAFSQMSALSEDDLRGSIRVSFVNEFGVEEAGIDGGGIFKDFMENITRAAFDV 735

Query: 121 QYGLFK 127
           QYGLFK
Sbjct: 736 QYGLFK 741

[Close]
BLAST of CsaV3_5G020800 vs. TrEMBL
Match: tr|V7BS42|V7BS42_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G120900g PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.2e-50
Identity = 104/126 (82.54%), Postives = 115/126 (91.27%), Query Frame = 0 

Query: 1   MNDYFISQAVIENTRANDIHKRVPFLVPLTSRVKIFTTQLAAARQMNGSLAVFARNRFRI 60
           +NDYFISQAVIENTRAN+I K+ PFL+P TSR KIFT+QLAAARQ +GS AVF RNRF+I
Sbjct: 614 VNDYFISQAVIENTRANEILKQAPFLIPFTSRAKIFTSQLAAARQRHGSQAVFTRNRFKI 673

Query: 61  RRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDV 120
           RRNHILEDA++QMS LSE DLRG IRV+FVNEFGVEEAGIDGGGIFKD MENIT+AAFDV
Sbjct: 674 RRNHILEDAYNQMSQLSEDDLRGLIRVAFVNEFGVEEAGIDGGGIFKDFMENITRAAFDV 733

Query: 121 QYGLFK 127
           QYGLFK
Sbjct: 734 QYGLFK 739

[Close]
BLAST of CsaV3_5G020800 vs. TrEMBL
Match: tr|A0A1S3VJH2|A0A1S3VJH2_VIGRR (E3 ubiquitin-protein ligase UPL6 OS=Vigna radiata var. radiata OX=3916 GN=LOC106775722 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.1e-50
Identity = 103/126 (81.75%), Postives = 114/126 (90.48%), Query Frame = 0 

Query: 1   MNDYFISQAVIENTRANDIHKRVPFLVPLTSRVKIFTTQLAAARQMNGSLAVFARNRFRI 60
           +NDYFISQA+IENTRAN+I K+ PFL+P TSR KIFT+QLAAARQ  GS AVF RNRF+I
Sbjct: 614 VNDYFISQAIIENTRANEILKQAPFLIPFTSRAKIFTSQLAAARQRQGSQAVFTRNRFKI 673

Query: 61  RRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDV 120
           RRNHILEDA++QMS LSE DLRG IRV+FVNEFGVEEAGIDGGGIFKD MENIT+AAFDV
Sbjct: 674 RRNHILEDAYNQMSQLSEDDLRGLIRVAFVNEFGVEEAGIDGGGIFKDFMENITRAAFDV 733

Query: 121 QYGLFK 127
           QYGLFK
Sbjct: 734 QYGLFK 739

[Close]
BLAST of CsaV3_5G020800 vs. TrEMBL
Match: tr|A0A0S3S4I5|A0A0S3S4I5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G114800 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.1e-50
Identity = 103/126 (81.75%), Postives = 114/126 (90.48%), Query Frame = 0 

Query: 1   MNDYFISQAVIENTRANDIHKRVPFLVPLTSRVKIFTTQLAAARQMNGSLAVFARNRFRI 60
           +NDYFISQA+IENTRAN+I K+ PFL+P TSR KIFT+QLAAARQ  GS AVF RNRF+I
Sbjct: 614 VNDYFISQAIIENTRANEILKQAPFLIPFTSRAKIFTSQLAAARQRQGSQAVFTRNRFKI 673

Query: 61  RRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDV 120
           RRNHILEDA++QMS LSE DLRG IRV+FVNEFGVEEAGIDGGGIFKD MENIT+AAFDV
Sbjct: 674 RRNHILEDAYNQMSQLSEDDLRGLIRVAFVNEFGVEEAGIDGGGIFKDFMENITRAAFDV 733

Query: 121 QYGLFK 127
           QYGLFK
Sbjct: 734 QYGLFK 739

[Close]
BLAST of CsaV3_5G020800 vs. TrEMBL
Match: tr|A0A2P5F5Q6|A0A2P5F5Q6_9ROSA (HECT domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_110280 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.4e-49
Identity = 103/126 (81.75%), Postives = 115/126 (91.27%), Query Frame = 0 

Query: 1   MNDYFISQAVIENTRANDIHKRVPFLVPLTSRVKIFTTQLAAARQMNGSLAVFARNRFRI 60
           +N++FISQAVIENTRANDI K+ PFLVP TSRVKIFT+QLAA RQ + S AV+ RNRFRI
Sbjct: 618 VNEFFISQAVIENTRANDILKQAPFLVPFTSRVKIFTSQLAAVRQKHSSHAVYTRNRFRI 677

Query: 61  RRNHILEDAFSQMSALSEVDLRGSIRVSFVNEFGVEEAGIDGGGIFKDVMENITQAAFDV 120
           RR+HILEDA++QMSALSE DLRG IRV+FVNEFGVEEAGIDGGGIFKD MENIT+AAFDV
Sbjct: 678 RRDHILEDAYNQMSALSEDDLRGPIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDV 737

Query: 121 QYGLFK 127
           QYGLFK
Sbjct: 738 QYGLFK 743

The following BLAST results are available for this feature:
BLAST of CsaV3_5G020800 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011655439.12.0e-6097.62PREDICTED: E3 ubiquitin-protein ligase UPL6-like [Cucumis sativus][more]
XP_011656310.12.2e-5996.03PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis sativu... [more]
XP_008458320.14.3e-5591.27PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis melo][more]
XP_022138444.12.8e-5489.68E3 ubiquitin-protein ligase UPL6 [Momordica charantia][more]
XP_022958808.11.8e-5388.89E3 ubiquitin-protein ligase UPL6 isoform X1 [Cucurbita moschata][more]
BLAST of CsaV3_5G020800 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G17205.11.3e-5077.78ubiquitin protein ligase 6[more]
AT3G53090.11.6e-1442.06ubiquitin-protein ligase 7[more]
BLAST of CsaV3_5G020800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8RWB8|UPL6_ARATH2.4e-4977.78E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana OX=3702 GN=UPL6 PE=2 SV... [more]
sp|Q80U95|UBE3C_MOUSE6.7e-1538.46Ubiquitin-protein ligase E3C OS=Mus musculus OX=10090 GN=Ube3c PE=1 SV=2[more]
sp|Q15386|UBE3C_HUMAN1.1e-1440.95Ubiquitin-protein ligase E3C OS=Homo sapiens OX=9606 GN=UBE3C PE=1 SV=3[more]
sp|Q7Z3V4|UBE3B_HUMAN1.5e-1436.13Ubiquitin-protein ligase E3B OS=Homo sapiens OX=9606 GN=UBE3B PE=1 SV=3[more]
sp|Q9ES34|UBE3B_MOUSE4.3e-1435.29Ubiquitin-protein ligase E3B OS=Mus musculus OX=10090 GN=Ube3b PE=1 SV=3[more]
BLAST of CsaV3_5G020800 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C746|A0A1S3C746_CUCME2.9e-5591.27LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 OS=Cucumis melo OX=3656 GN... [more]
tr|V7BS42|V7BS42_PHAVU1.2e-5082.54Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G120900g PE=4 ... [more]
tr|A0A1S3VJH2|A0A1S3VJH2_VIGRR2.1e-5081.75E3 ubiquitin-protein ligase UPL6 OS=Vigna radiata var. radiata OX=3916 GN=LOC106... [more]
tr|A0A0S3S4I5|A0A0S3S4I5_PHAAN2.1e-5081.75Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G... [more]
tr|A0A2P5F5Q6|A0A2P5F5Q6_9ROSA1.4e-4981.75HECT domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_110280... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR035983Hect_E3_ubiquitin_ligase
IPR000569HECT_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005575 cellular_component
molecular_function GO:0004842 ubiquitin-protein transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G020800.1CsaV3_5G020800.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.90.1750.10coord: 7..126
e-value: 4.5E-21
score: 76.9
NoneNo IPR availablePANTHERPTHR11254:SF413E3 UBIQUITIN-PROTEIN LIGASE UPL6coord: 2..126
NoneNo IPR availablePANTHERPTHR11254HECT DOMAIN UBIQUITIN-PROTEIN LIGASEcoord: 2..126
IPR000569HECT domainPROSITEPS50237HECTcoord: 77..126
score: 13.569
IPR035983HECT, E3 ligase catalytic domainSUPERFAMILYSSF56204Hect, E3 ligase catalytic domaincoord: 48..125

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G020800Silver-seed gourdcarcucB0516
CsaV3_5G020800Silver-seed gourdcarcucB0870
CsaV3_5G020800Cucumber (Gy14) v2cgybcucB232
CsaV3_5G020800Cucurbita maxima (Rimu)cmacucB0344
CsaV3_5G020800Cucurbita maxima (Rimu)cmacucB0890
CsaV3_5G020800Cucurbita moschata (Rifu)cmocucB0340
CsaV3_5G020800Cucurbita moschata (Rifu)cmocucB0880
CsaV3_5G020800Cucurbita pepo (Zucchini)cpecucB0227
CsaV3_5G020800Cucurbita pepo (Zucchini)cpecucB0549
CsaV3_5G020800Wild cucumber (PI 183967)cpicucB284
CsaV3_5G020800Bottle gourd (USVL1VR-Ls)cuclsiB354
CsaV3_5G020800Melon (DHL92) v3.5.1cucmeB352
CsaV3_5G020800Melon (DHL92) v3.6.1cucmedB344
CsaV3_5G020800Watermelon (Charleston Gray)cucwcgB395
CsaV3_5G020800Watermelon (97103) v1cucwmB442
CsaV3_5G020800Watermelon (97103) v2cucwmbB360
CsaV3_5G020800Wax gourdcucwgoB468