CsaV3_5G020700 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G020700
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 15776474 .. 15776677 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCACTACAAGAATTCGAGAGTCTCCCGATGCTGGCAAGCGTTGCTATATATGCCTAAAGGCGTTAGGAAAGGATTTCCCGACTTACATGGTGTCATCGGGAAGGAAGTCGACAATAGTGCATCGGGGGAGGCATTCTCAAAGTGCAAATGGGAAGGCATCGAGCATGCTTTACTCTCGGGCCATCAATAACGACAGATAG

mRNA sequence

ATGGTCACTACAAGAATTCGAGAGTCTCCCGATGCTGGCAAGCGTTGCTATATATGCCTAAAGGCGTTAGGAAAGGATTTCCCGACTTACATGGTGTCATCGGGAAGGAAGTCGACAATAGTGCATCGGGGGAGGCATTCTCAAAGTGCAAATGGGAAGGCATCGAGCATGCTTTACTCTCGGGCCATCAATAACGACAGATAG

Coding sequence (CDS)

ATGGTCACTACAAGAATTCGAGAGTCTCCCGATGCTGGCAAGCGTTGCTATATATGCCTAAAGGCGTTAGGAAAGGATTTCCCGACTTACATGGTGTCATCGGGAAGGAAGTCGACAATAGTGCATCGGGGGAGGCATTCTCAAAGTGCAAATGGGAAGGCATCGAGCATGCTTTACTCTCGGGCCATCAATAACGACAGATAG

Protein sequence

MVTTRIRESPDAGKRCYICLKALGKDFPTYMVSSGRKSTIVHRGRHSQSANGKASSMLYSRAINNDR

Homology

[Close]

BLAST of CsaV3_5G020700 vs. NCBI nr
Match: KGN50937.1 (hypothetical protein Csa_5G351590 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 9.9e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MVTTRIRESPDAGKRCYICLKALGKDFPTYMVSSGRKSTIVHRGRHSQSANGKASSMLYS 60
          MVTTRIRESPDAGKRCYICLKALGKDFPTYMVSSGRKSTIVHRGRHSQSANGKASSMLYS
Sbjct: 1  MVTTRIRESPDAGKRCYICLKALGKDFPTYMVSSGRKSTIVHRGRHSQSANGKASSMLYS 60

Query: 61 RAINNDR 68
          RAINNDR
Sbjct: 61 RAINNDR 67

[Close]

BLAST of CsaV3_5G020700 vs. TrEMBL
Match: tr|A0A0A0KRC6|A0A0A0KRC6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G351590 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.5e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MVTTRIRESPDAGKRCYICLKALGKDFPTYMVSSGRKSTIVHRGRHSQSANGKASSMLYS 60
          MVTTRIRESPDAGKRCYICLKALGKDFPTYMVSSGRKSTIVHRGRHSQSANGKASSMLYS
Sbjct: 1  MVTTRIRESPDAGKRCYICLKALGKDFPTYMVSSGRKSTIVHRGRHSQSANGKASSMLYS 60

Query: 61 RAINNDR 68
          RAINNDR
Sbjct: 61 RAINNDR 67

The following BLAST results are available for this feature:

BLAST of CsaV3_5G020700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50937.1	9.9e-30	100.00	hypothetical protein Csa_5G351590 [Cucumis sativus]	[more]

BLAST of CsaV3_5G020700 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G020700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G020700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KRC6\|A0A0A0KRC6_CUCSA	6.5e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G351590 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G020700.1	CsaV3_5G020700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..67

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G020700	Wax gourd	cucwgoB468
CsaV3_5G020700	Silver-seed gourd	carcucB0516
CsaV3_5G020700	Silver-seed gourd	carcucB0870
CsaV3_5G020700	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G020700	Cucumber (Gy14) v1	cgycucB328
CsaV3_5G020700	Cucurbita maxima (Rimu)	cmacucB0344
CsaV3_5G020700	Cucurbita maxima (Rimu)	cmacucB0890
CsaV3_5G020700	Cucurbita moschata (Rifu)	cmocucB0340
CsaV3_5G020700	Cucurbita moschata (Rifu)	cmocucB0880
CsaV3_5G020700	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G020700	Bottle gourd (USVL1VR-Ls)	cuclsiB354
CsaV3_5G020700	Melon (DHL92) v3.5.1	cucmeB352
CsaV3_5G020700	Melon (DHL92) v3.6.1	cucmedB344
CsaV3_5G020700	Watermelon (Charleston Gray)	cucwcgB395
CsaV3_5G020700	Watermelon (97103) v1	cucwmB442
CsaV3_5G020700	Watermelon (97103) v2	cucwmbB360