CsaV3_5G020630 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G020630
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionribosome biogenesis protein BRX1-like
Locationchr5 : 15660384 .. 15662817 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAATTGAAGCTTACAGGGAACCATCTGAAAGGTTCCCGTCCAATTTTGACATTTTCATCAAATTTTGATAAAGATGTCCACTGGAAACTTCTGAAGGAAATGATTATTCAGGTACCAATGGCAAAGTTTTGTCTTTAACAATTAATTTTTGAATGTTGAAATGATTTTTCATTCTTACTCGTGGATCAATGTATGAGGCAAATGTCAATTTCCTTGTCTTTCTTCATTAAACGCATTTTTTGCTCATTTCCTTGCTCCTTCAATCCAAAGCTAACATCGTATTGAATTGATAAAATGGTCTGCATGACTGTAGTCGAAGTAGCTTCTTTCAGTTTTTTCTTATTTGGAAAGAAAAATAAAAGATATTCATAATGCACTTCTTTCATGTAATATCATGGCATAAGAATATGGTTAATGAATACTTGTGCCCATTCTAAAATGCCGGTGCCTCACCACTATTATTCTCTTTCCATGCTGCCTTTATTAATTTCTGATTTCACATATGCATATTTACTATGTTGTGAAAAGTATGTAGATCCTTGCTGCTTCTCCAAATAATGGGATTTTTTAAAACGATTGCTATTAACTCTTGTTTTGCATGACATACTTTTATCTCACCAATGTGTTTTTCTCTCAGATTTTTGGAACTCCTAAGGAGCATCGACATTCTAAACCGTACCATGATCATGTATTTGTTTTCTCTATTGTTGATGACCATATCTGGTTCTGGAATTACCAGGTATGCTTTATTTATTTCCTACTTGCTACAGAATTTAATACTAACCATGATCATGCTTTATTTATAACCATCACTCCGTTAGCAACACCACCTGAGGAACAATGCGTGTTTTTAATGAAGTACGTTAAGGTATATATGGATAAATGTCAGAAGTGTCGTCCTTAAGATATGAGGCATACAATCGTCATTAGGAAAGGAATTTGGCATGGCAAAAAATTAATTGATTTGAAGAGTTTGAGATTAAGCAGATTTTGGGGAATAGTTTTTAGGAGTCCTAGTTGGGGATCTTGCTATTTTTCTTTCTTATGTCAATGATTTCATTGTTTTTGTCAATGATTTCATTGTTTTTCTAGTTCACTGTATACATTTCCATATAATTGATTGTTATCCTTTAAACTTACATGTTCAATTTTCCATCAACTGTTGGTATCTTTGTTCTTGTTTGAGATTTGTGTGGGTGTGACCTATTCCCCAACCTATTATTTAATGATATGGTGCTTGTCTTCTTTGTTTGGTGTGATCAGATATCTGTTCCACATAATGAATCAGATAAAGTCGCTCGAGGAGGACTTGATAAAATGACACTCATTGAGGTTATTCAAATTCCACTTCCTGTTTAGTTTATAAGTGGGTTTTCACAATTTTTTTCACGGACTTCAAATAATTGCATTTGACAGGTTGGCCCACGATTCTGTTTGAATCCAATCAAGATATTTGGTGGCAGTTTTGGAGGTCCTACCCTATATGAGAACCCACTTTATGTATCGCCAAACCAGGTTAGATTGATTGTCCAACTTTTTGATAATTTGGGATTACACTTCTTCACACTATTCTTTTAAATTTGGGTTATAAAAACAGCTGAGAATTTACATTTGCATTAGTTATATCACAACACACTTCACAACACACCCAAAATTGTTGATCCTACTACTTGAGTAACACACTAGAACTCTGCATCACTTCACAATACAGGATTTGCTCAAAAACTATTATTTCCACTTCAACCGACTATCTTTGATAAGCCAATTCTAAAACCAAACTAAGCATATCATCTCTTGAATATACCCTTATAAAGAAATTTAGAAAATATACCAACAAAAGATCAAGACCAAGCAGAGAAGTCCATTTATCTTCATGCAACGCAAACGAATCACCCAAAACTACCCATCTTTCCAAGGCAACTTTAAATCCACAGGTTTTTTCTTCCATTTTTCAACTTGTTGTTTGCTGTGTTTGCCTAATGTAGTCCTCACATGCTTCTTTTCATTTCATGGAATCAAGTGTTCCATTTTTCAATTTTAAATCCACATGCTTCTTTTCATTTCATGGAATCAAGTGTTGAAGTTCTTGTTTGTGTTCTGTATTTTGTTGAGACATTGATTTAGTTACTCATTGATTGTACGTATGTGTTATGGATACTTATATTCATGTTGTCTTTGTAGGTTCAACTGGAGTCGACAACTTCATGAGTTTTCTTTCAAAGAACATTTCCAGAGACGAACATTCTCGGTTGGTCGTTTATGCTTCTGCAGAAAATCTTGTTAGATGTATTCTAATGCTATTTAAAATATTTTTTGATTAAGGGCTAGGATTCTGTACATGTGGATTATTGAAACTTGTATTAAGATGTACAAATATTATAAATCGTATTATAGTGTATATATATTAAAGTGTTGGCTATTTTTTTGT

mRNA sequence

ATGGAAGAATTGAAGCTTACAGGGAACCATCTGAAAGGTTCCCGTCCAATTTTGACATTTTCATCAAATTTTGATAAAGATGTCCACTGGAAACTTCTGAAGGAAATGATTATTCAGATTTTTGGAACTCCTAAGGAGCATCGACATTCTAAACCGTACCATGATCATGTATTTGTTTTCTCTATTGTTGATGACCATATCTGGTTCTGGAATTACCAGGTTCAACTGGAGTCGACAACTTCATGA

Coding sequence (CDS)

ATGGAAGAATTGAAGCTTACAGGGAACCATCTGAAAGGTTCCCGTCCAATTTTGACATTTTCATCAAATTTTGATAAAGATGTCCACTGGAAACTTCTGAAGGAAATGATTATTCAGATTTTTGGAACTCCTAAGGAGCATCGACATTCTAAACCGTACCATGATCATGTATTTGTTTTCTCTATTGTTGATGACCATATCTGGTTCTGGAATTACCAGGTTCAACTGGAGTCGACAACTTCATGA

Protein sequence

MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFWNYQVQLESTTS
Homology
[Close]
BLAST of CsaV3_5G020630 vs. NCBI nr
Match: XP_008450669.1 (PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >XP_008450670.1 PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >XP_008450671.1 PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 2.2e-36
Identity = 73/81 (90.12%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 1   MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
           MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF
Sbjct: 145 MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 204

Query: 61  SIVDDHIWFWNYQVQLESTTS 82
           SIVDDHIWF NYQ+ +    S
Sbjct: 205 SIVDDHIWFRNYQISVPHNES 225

[Close]
BLAST of CsaV3_5G020630 vs. NCBI nr
Match: XP_022930733.1 (ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita moschata] >XP_022930743.1 ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita moschata])

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-35
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 1   MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
           MEELKLTGNHLKGSRP+LTFSSNFDKDVHWKLLKE+I+QIFGTPKEHRHSKPYHDHVFVF
Sbjct: 145 MEELKLTGNHLKGSRPLLTFSSNFDKDVHWKLLKEIIVQIFGTPKEHRHSKPYHDHVFVF 204

Query: 61  SIVDDHIWFWNYQVQLESTTS 82
           SIVDDHIWF NYQ+ +    S
Sbjct: 205 SIVDDHIWFRNYQISVPHNES 225

[Close]
BLAST of CsaV3_5G020630 vs. NCBI nr
Match: XP_022968854.1 (ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita maxima] >XP_022968859.1 ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita maxima])

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-35
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 1   MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
           MEELKLTGNHLKGSRP+LTFSSNFDKDVHWKLLKE+I+QIFGTPKEHRHSKPYHDHVFVF
Sbjct: 145 MEELKLTGNHLKGSRPLLTFSSNFDKDVHWKLLKEIIVQIFGTPKEHRHSKPYHDHVFVF 204

Query: 61  SIVDDHIWFWNYQVQLESTTS 82
           SIVDDHIWF NYQ+ +    S
Sbjct: 205 SIVDDHIWFRNYQISVPHNES 225

[Close]
BLAST of CsaV3_5G020630 vs. NCBI nr
Match: XP_022159792.1 (ribosome biogenesis protein BRX1 homolog 1-like [Momordica charantia])

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-35
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 1   MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
           MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMI+QIFG PKEHRHSKPYHDHVFVF
Sbjct: 145 MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIVQIFGIPKEHRHSKPYHDHVFVF 204

Query: 61  SIVDDHIWFWNYQVQLESTTS 82
           SIVDDHIWF NYQ+ +    S
Sbjct: 205 SIVDDHIWFRNYQIAVPHNES 225

[Close]
BLAST of CsaV3_5G020630 vs. NCBI nr
Match: XP_022968762.1 (ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita maxima] >XP_022968763.1 ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita maxima] >XP_022968764.1 ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita maxima])

HSP 1 Score: 156.8 bits (395), Expect = 3.2e-35
Identity = 70/81 (86.42%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 1   MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
           MEELKLTGNHLKGSRPILTFSSNFDKD HWKLLKE+I+QIFGTPKEHRHSKPYHDHVFVF
Sbjct: 145 MEELKLTGNHLKGSRPILTFSSNFDKDAHWKLLKEIIVQIFGTPKEHRHSKPYHDHVFVF 204

Query: 61  SIVDDHIWFWNYQVQLESTTS 82
           SIVDDHIWF NYQ+ +    S
Sbjct: 205 SIVDDHIWFRNYQIAVPHNES 225

[Close]
BLAST of CsaV3_5G020630 vs. TAIR10
Match: AT1G52930.1 (Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 147.1 bits (370), Expect = 4.7e-36
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 0 

Query: 1   MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
           MEE+KLTGNHLKGSRP+LTFSSNFDKD HWKLLKEM+ Q+FG PKEHR SKPYHDHVFVF
Sbjct: 147 MEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKLLKEMLTQVFGIPKEHRKSKPYHDHVFVF 206

Query: 61  SIVDDHIWFWNYQVQLESTTS 82
           SIVD+HIWF NYQ+ +    S
Sbjct: 207 SIVDEHIWFRNYQISVPHNES 227

[Close]
BLAST of CsaV3_5G020630 vs. TAIR10
Match: AT3G15460.1 (Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 142.1 bits (357), Expect = 1.5e-34
Identity = 63/81 (77.78%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 1   MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
           MEELKLTGNHLKGSRP+LTFSSNF+ D HWKLLKEM+ QIFG P+ HR SKPYHDHVFVF
Sbjct: 143 MEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLTQIFGIPEGHRKSKPYHDHVFVF 202

Query: 61  SIVDDHIWFWNYQVQLESTTS 82
           SIVDDHIWF NYQ+ +    S
Sbjct: 203 SIVDDHIWFRNYQISVPHNES 223

[Close]
BLAST of CsaV3_5G020630 vs. Swiss-Prot
Match: sp|Q9C928|BRX12_ARATH (Ribosome biogenesis protein BRX1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=BRIX1-2 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 8.4e-35
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 0 

Query: 1   MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
           MEE+KLTGNHLKGSRP+LTFSSNFDKD HWKLLKEM+ Q+FG PKEHR SKPYHDHVFVF
Sbjct: 147 MEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKLLKEMLTQVFGIPKEHRKSKPYHDHVFVF 206

Query: 61  SIVDDHIWFWNYQVQLESTTS 82
           SIVD+HIWF NYQ+ +    S
Sbjct: 207 SIVDEHIWFRNYQISVPHNES 227

[Close]
BLAST of CsaV3_5G020630 vs. Swiss-Prot
Match: sp|Q9LE16|BRX11_ARATH (Ribosome biogenesis protein BRX1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=BRIX1-1 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.7e-33
Identity = 63/81 (77.78%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 1   MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
           MEELKLTGNHLKGSRP+LTFSSNF+ D HWKLLKEM+ QIFG P+ HR SKPYHDHVFVF
Sbjct: 143 MEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLTQIFGIPEGHRKSKPYHDHVFVF 202

Query: 61  SIVDDHIWFWNYQVQLESTTS 82
           SIVDDHIWF NYQ+ +    S
Sbjct: 203 SIVDDHIWFRNYQISVPHNES 223

[Close]
BLAST of CsaV3_5G020630 vs. Swiss-Prot
Match: sp|Q8UVY2|BRX1_XENLA (Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis OX=8355 GN=brix1 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.8e-20
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 0 

Query: 1   MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
           + ELK++GN LKGSRPIL+F   FD++  + LLKE++ QIFGTP+ H  S+P+ DH+F F
Sbjct: 142 LAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTF 201

Query: 61  SIVDDHIWFWNYQV 75
           SI D+ IWF NYQ+
Sbjct: 202 SIADNRIWFRNYQI 215

[Close]
BLAST of CsaV3_5G020630 vs. Swiss-Prot
Match: sp|Q3SZZ0|BRX1_BOVIN (Ribosome biogenesis protein BRX1 homolog OS=Bos taurus OX=9913 GN=BRIX1 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-19
Identity = 42/74 (56.76%), Postives = 58/74 (78.38%), Query Frame = 0 

Query: 1   MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
           + ELK+TGN LKGSRP+L+F   FD+  H+ LLKE++IQIF TP+ H  S+P+ DHVF F
Sbjct: 149 LAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTF 208

Query: 61  SIVDDHIWFWNYQV 75
           +I+D+ IWF N+Q+
Sbjct: 209 TILDNRIWFRNFQI 222

[Close]
BLAST of CsaV3_5G020630 vs. Swiss-Prot
Match: sp|Q8TDN6|BRX1_HUMAN (Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens OX=9606 GN=BRIX1 PE=1 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-19
Identity = 42/74 (56.76%), Postives = 58/74 (78.38%), Query Frame = 0 

Query: 1   MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
           + ELK+TGN LKGSRP+L+F   FD+  H+ LLKE++IQIF TP+ H  S+P+ DHVF F
Sbjct: 149 LAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTF 208

Query: 61  SIVDDHIWFWNYQV 75
           +I+D+ IWF N+Q+
Sbjct: 209 TILDNRIWFRNFQI 222

[Close]
BLAST of CsaV3_5G020630 vs. TrEMBL
Match: tr|A0A1S3BQS3|A0A1S3BQS3_CUCME (ribosome biogenesis protein BRX1-like OS=Cucumis melo OX=3656 GN=LOC103492188 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-36
Identity = 73/81 (90.12%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 1   MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
           MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF
Sbjct: 145 MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 204

Query: 61  SIVDDHIWFWNYQVQLESTTS 82
           SIVDDHIWF NYQ+ +    S
Sbjct: 205 SIVDDHIWFRNYQISVPHNES 225

[Close]
BLAST of CsaV3_5G020630 vs. TrEMBL
Match: tr|A0A118K6D2|A0A118K6D2_CYNCS (Anticodon-binding OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_011088 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-34
Identity = 70/79 (88.61%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 1   MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
           MEELKLTGNHLKGSRP+LTFSSNFDKD HWKLLKEMIIQIFGTPKEHR SKPYHDHVFVF
Sbjct: 142 MEELKLTGNHLKGSRPLLTFSSNFDKDPHWKLLKEMIIQIFGTPKEHRKSKPYHDHVFVF 201

Query: 61  SIVDDHIWFWNYQVQLEST 80
           SIVDDHIWF NYQ+    T
Sbjct: 202 SIVDDHIWFRNYQISCPHT 220

[Close]
BLAST of CsaV3_5G020630 vs. TrEMBL
Match: tr|A0A2P2KB14|A0A2P2KB14_RHIMU (Ribosome biogenesis protein brix OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.4e-34
Identity = 70/81 (86.42%), Postives = 73/81 (90.12%), Query Frame = 0 

Query: 1   MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
           MEELKLTGNHLKGSRPILTFSSNFDKD HWKLLKEM++QIFGTPKEHR SKPYHDHVFVF
Sbjct: 138 MEELKLTGNHLKGSRPILTFSSNFDKDSHWKLLKEMLMQIFGTPKEHRKSKPYHDHVFVF 197

Query: 61  SIVDDHIWFWNYQVQLESTTS 82
           SIVDDHIWF NYQV +    S
Sbjct: 198 SIVDDHIWFRNYQVSVPHNES 218

[Close]
BLAST of CsaV3_5G020630 vs. TrEMBL
Match: tr|A0A2P2KB60|A0A2P2KB60_RHIMU (Uncharacterized protein MANES_12G076100 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.4e-34
Identity = 70/81 (86.42%), Postives = 73/81 (90.12%), Query Frame = 0 

Query: 1   MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
           MEELKLTGNHLKGSRPILTFSSNFDKD HWKLLKEM++QIFGTPKEHR SKPYHDHVFVF
Sbjct: 138 MEELKLTGNHLKGSRPILTFSSNFDKDSHWKLLKEMLMQIFGTPKEHRKSKPYHDHVFVF 197

Query: 61  SIVDDHIWFWNYQVQLESTTS 82
           SIVDDHIWF NYQV +    S
Sbjct: 198 SIVDDHIWFRNYQVSVPHNES 218

[Close]
BLAST of CsaV3_5G020630 vs. TrEMBL
Match: tr|A0A2P2KB08|A0A2P2KB08_RHIMU (Ribosome biogenesis protein brix OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.4e-34
Identity = 70/81 (86.42%), Postives = 73/81 (90.12%), Query Frame = 0 

Query: 1  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEHRHSKPYHDHVFVF 60
          MEELKLTGNHLKGSRPILTFSSNFDKD HWKLLKEM++QIFGTPKEHR SKPYHDHVFVF
Sbjct: 1  MEELKLTGNHLKGSRPILTFSSNFDKDSHWKLLKEMLMQIFGTPKEHRKSKPYHDHVFVF 60

Query: 61 SIVDDHIWFWNYQVQLESTTS 82
          SIVDDHIWF NYQV +    S
Sbjct: 61 SIVDDHIWFRNYQVSVPHNES 81

The following BLAST results are available for this feature:
BLAST of CsaV3_5G020630 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008450669.12.2e-3690.12PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >XP_008450670.1 ... [more]
XP_022930733.11.5e-3586.42ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita moschata] >XP_0229307... [more]
XP_022968854.11.5e-3586.42ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita maxima] >XP_022968859... [more]
XP_022159792.11.9e-3587.65ribosome biogenesis protein BRX1 homolog 1-like [Momordica charantia][more]
XP_022968762.13.2e-3586.42ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita maxima] >XP_022968763... [more]
BLAST of CsaV3_5G020630 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G52930.14.7e-3679.01Ribosomal RNA processing Brix domain protein[more]
AT3G15460.11.5e-3477.78Ribosomal RNA processing Brix domain protein[more]
BLAST of CsaV3_5G020630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9C928|BRX12_ARATH8.4e-3579.01Ribosome biogenesis protein BRX1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=BR... [more]
sp|Q9LE16|BRX11_ARATH2.7e-3377.78Ribosome biogenesis protein BRX1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=BR... [more]
sp|Q8UVY2|BRX1_XENLA5.8e-2056.76Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis OX=8355 GN=brix1 PE=2... [more]
sp|Q3SZZ0|BRX1_BOVIN1.7e-1956.76Ribosome biogenesis protein BRX1 homolog OS=Bos taurus OX=9913 GN=BRIX1 PE=2 SV=... [more]
sp|Q8TDN6|BRX1_HUMAN1.7e-1956.76Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens OX=9606 GN=BRIX1 PE=1 S... [more]
BLAST of CsaV3_5G020630 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BQS3|A0A1S3BQS3_CUCME1.5e-3690.12ribosome biogenesis protein BRX1-like OS=Cucumis melo OX=3656 GN=LOC103492188 PE... [more]
tr|A0A118K6D2|A0A118K6D2_CYNCS1.4e-3488.61Anticodon-binding OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_011088 PE... [more]
tr|A0A2P2KB14|A0A2P2KB14_RHIMU2.4e-3486.42Ribosome biogenesis protein brix OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|A0A2P2KB60|A0A2P2KB60_RHIMU2.4e-3486.42Uncharacterized protein MANES_12G076100 OS=Rhizophora mucronata OX=61149 PE=4 SV... [more]
tr|A0A2P2KB08|A0A2P2KB08_RHIMU2.4e-3486.42Ribosome biogenesis protein brix OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026532BRX1
IPR007109Brix
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G020630.1CsaV3_5G020630.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007109Brix domainPFAMPF04427Brixcoord: 1..77
e-value: 4.1E-13
score: 49.8
IPR007109Brix domainPROSITEPS50833BRIXcoord: 1..81
score: 10.324
IPR026532Ribosome biogenesis protein BRX1PANTHERPTHR13634RIBOSOME BIOGENESIS PROTEIN BRIXcoord: 1..79

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G020630CsGy5G013600Cucumber (Gy14) v2cgybcucB232
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G020630Silver-seed gourdcarcucB0565
CsaV3_5G020630Silver-seed gourdcarcucB0868
CsaV3_5G020630Silver-seed gourdcarcucB0870
CsaV3_5G020630Cucurbita maxima (Rimu)cmacucB0344
CsaV3_5G020630Cucurbita maxima (Rimu)cmacucB0358
CsaV3_5G020630Cucurbita maxima (Rimu)cmacucB0868
CsaV3_5G020630Cucurbita moschata (Rifu)cmocucB0340
CsaV3_5G020630Cucurbita moschata (Rifu)cmocucB0353
CsaV3_5G020630Cucurbita moschata (Rifu)cmocucB0854
CsaV3_5G020630Cucurbita pepo (Zucchini)cpecucB0215
CsaV3_5G020630Cucurbita pepo (Zucchini)cpecucB0525
CsaV3_5G020630Wild cucumber (PI 183967)cpicucB284
CsaV3_5G020630Bottle gourd (USVL1VR-Ls)cuclsiB348
CsaV3_5G020630Melon (DHL92) v3.5.1cucmeB352
CsaV3_5G020630Watermelon (Charleston Gray)cucwcgB388
CsaV3_5G020630Melon (DHL92) v3.6.1cucmedB344
CsaV3_5G020630Watermelon (97103) v1cucwmB437
CsaV3_5G020630Watermelon (97103) v2cucwmbB354
CsaV3_5G020630Wax gourdcucwgoB452