CsaV3_5G020330 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G020330
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 15245928 .. 15246754 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTACCCATCAGGTAAATTGGTTAAATTATTAGTGAGGCCAAAGTTGAGAGGAGTGGAGAAAAAATTGTCCCGTAAGGAACTAAAACAAAGAATGTAATTTGTGGATGAAAACGAAAAGAAGTGAAACGAAAAAAGAAGTAATATTTAATTGGGCAACAAACAACTCTGACACTCTTTTTGTCACACTGCTCCCATTCAAAAACTGAGCCGCAACTTGCACAAACTAGCCGTCGAGATCAGTCAACCACACAGTTTGCGGACCAAATTCTTCCAGCAACTACCAACCTTCCCCCAAAAAGCCCACACCACCCTCAAACTCAACCCAATCAACCCCTCTTTTATACAATTCAAACACAAACACAGACCCCCATCTTCTCTCTGCTTCATTGCGGTTCTTCTGTCGTAAGTGACTCTCTTCTATGGCTTCCTCTTTTTGCTTTACATTCTACTATGTTTAGTCACCGTTCTGGGGGGATTCGTTTCCTCCTCCTTTTTTTTTCTTTTTCTTTTTTTAAATTTTCAGTCAAAATTTCATGACGAAAGAAACCGACCCTTTTCCACTTACCCTCCAAAAAGAGAAACAGTGAACTGAGCTTTCACATTCTCTGCCCTTTCTTGAGGATTATGATCATGTGGGTGTTTGGTATTTTTTGGTTATGGTGTTTATTTTATACCCACACAATCGGGTTCTTATATTTATTTATTCTTACTTCATTTTGGTTTTTTTTTTTTTTTATCTATTTATTTATTTTTGGACGAATTACAGGTGCGATACAAAAGAGAAGCTAAGTGGGAGTTTCTTCCGTGTCGAAGCATTGCTTAG

mRNA sequence

ATGTGTACCCATCAGCCGCAACTTGCACAAACTAGCCGTCGAGATCAGTCAACCACACAGTTTGCGGACCAAATTCTTCCAGCAACTACCAACCTTCCCCCAAAAAGCCCACACCACCCTCAAACTCAACCCAATCAACCCCTCTTTTATACAATTCAAACACAAACACAGACCCCCATCTTCTCTCTGCTTCATTGCGGTTCTTCTGTCGTGCGATACAAAAGAGAAGCTAAGTGGGAGTTTCTTCCGTGTCGAAGCATTGCTTAG

Coding sequence (CDS)

ATGTGTACCCATCAGCCGCAACTTGCACAAACTAGCCGTCGAGATCAGTCAACCACACAGTTTGCGGACCAAATTCTTCCAGCAACTACCAACCTTCCCCCAAAAAGCCCACACCACCCTCAAACTCAACCCAATCAACCCCTCTTTTATACAATTCAAACACAAACACAGACCCCCATCTTCTCTCTGCTTCATTGCGGTTCTTCTGTCGTGCGATACAAAAGAGAAGCTAAGTGGGAGTTTCTTCCGTGTCGAAGCATTGCTTAG

Protein sequence

MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPIFSLLHCGSSVVRYKREAKWEFLPCRSIA
Homology
[Close]
BLAST of CsaV3_5G020330 vs. NCBI nr
Match: KGN50903.1 (hypothetical protein Csa_5G320420 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 7.1e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI 60
          MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI
Sbjct: 1  MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI 60

Query: 61 FSLLHCGSSVVRYKREAKWEFLPCRSIA 89
          FSLLHCGSSVVRYKREAKWEFLPCRSIA
Sbjct: 61 FSLLHCGSSVVRYKREAKWEFLPCRSIA 88

[Close]
BLAST of CsaV3_5G020330 vs. TrEMBL
Match: tr|A0A0A0KMT8|A0A0A0KMT8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G320420 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.7e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI 60
          MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI
Sbjct: 1  MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI 60

Query: 61 FSLLHCGSSVVRYKREAKWEFLPCRSIA 89
          FSLLHCGSSVVRYKREAKWEFLPCRSIA
Sbjct: 61 FSLLHCGSSVVRYKREAKWEFLPCRSIA 88

The following BLAST results are available for this feature:
BLAST of CsaV3_5G020330 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50903.17.1e-44100.00hypothetical protein Csa_5G320420 [Cucumis sativus][more]
BLAST of CsaV3_5G020330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G020330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G020330 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KMT8|A0A0A0KMT8_CUCSA4.7e-44100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G320420 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G020330.1CsaV3_5G020330.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G020330Silver-seed gourdcarcucB0565
CsaV3_5G020330Silver-seed gourdcarcucB0868
CsaV3_5G020330Cucumber (Gy14) v2cgybcucB232
CsaV3_5G020330Cucumber (Gy14) v1cgycucB277
CsaV3_5G020330Cucurbita maxima (Rimu)cmacucB0358
CsaV3_5G020330Cucurbita maxima (Rimu)cmacucB0868
CsaV3_5G020330Cucurbita moschata (Rifu)cmocucB0353
CsaV3_5G020330Cucurbita moschata (Rifu)cmocucB0854
CsaV3_5G020330Cucurbita pepo (Zucchini)cpecucB0215
CsaV3_5G020330Cucurbita pepo (Zucchini)cpecucB0525
CsaV3_5G020330Wild cucumber (PI 183967)cpicucB284
CsaV3_5G020330Wild cucumber (PI 183967)cpicucB289
CsaV3_5G020330Bottle gourd (USVL1VR-Ls)cuclsiB348
CsaV3_5G020330Melon (DHL92) v3.5.1cucmeB352
CsaV3_5G020330Watermelon (Charleston Gray)cucwcgB388
CsaV3_5G020330Melon (DHL92) v3.6.1cucmedB344
CsaV3_5G020330Watermelon (97103) v1cucwmB437
CsaV3_5G020330Watermelon (97103) v2cucwmbB354
CsaV3_5G020330Wax gourdcucwgoB452