CsaV3_5G020320 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G020320
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative
Locationchr5 : 15231742 .. 15231911 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAATGCCAAGAACCTTAATAACAAAATGATGGACGAACTTTATGAGAAATTCAAGATCAATCACAGAAATTCGACTCCATATCGCCCCAAGATGAATGGGGCAGTTGAGACAGCCAACAAAAATATTAAAAGAATCATTGAGAAGATGACAACAACATACAAAGATTAG

mRNA sequence

AATGCCAAGAACCTTAATAACAAAATGATGGACGAACTTTATGAGAAATTCAAGATCAATCACAGAAATTCGACTCCATATCGCCCCAAGATGAATGGGGCAGTTGAGACAGCCAACAAAAATATTAAAAGAATCATTGAGAAGATGACAACAACATACAAAGATTA

Coding sequence (CDS)

AATGCCAAGAACCTTAATAACAAAATGATGGACGAACTTTATGAGAAATTCAAGATCAATCACAGAAATTCGACTCCATATCGCCCCAAGATGAATGGGGCAGTTGAGACAGCCAACAAAAATATTAAAAGAATCATTGAGAAGATGACAACAACATACAAAGATTA

Protein sequence

NAKNLNNKMMDELYEKFKINHRNSTPYRPKMNGAVETANKNIKRIIEKMTTTYKDX
Homology
[Close]
BLAST of CsaV3_5G020320 vs. NCBI nr
Match: XP_011656202.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein K02A2.6-like [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 2.0e-20
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1   NAKNLNNKMMDELYEKFKINHRNSTPYRPKMNGAVETANKNIKRIIEKMTTTYKD 56
           NAKNLNNKMMDEL EKFKINHRNSTPYRPKMNGAVE ANKNIKRIIEKMTTTYKD
Sbjct: 249 NAKNLNNKMMDELCEKFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTTTYKD 303

[Close]
BLAST of CsaV3_5G020320 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 4.6e-17
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 1    NAKNLNNKMMDELYEKFKINHRNSTPYRPKMNGAVETANKNIKRIIEKMTTTYKD 56
            NA+NLNNK+M ELYE+FKI H NSTPYRPKMNGAVE ANKNIKRI+EKMT TY+D
Sbjct: 2047 NARNLNNKLMSELYEQFKIKHLNSTPYRPKMNGAVEAANKNIKRIVEKMTVTYRD 2101

[Close]
BLAST of CsaV3_5G020320 vs. NCBI nr
Match: XP_022716542.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111275425 [Durio zibethinus])

HSP 1 Score: 95.1 bits (235), Expect = 7.9e-17
Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 0 

Query: 1    NAKNLNNKMMDELYEKFKINHRNSTPYRPKMNGAVETANKNIKRIIEKMTTTYKD 56
            NAKNLNNKMM+E+  +FKI+HRNSTPYRPKMNGAVE ANKNIKRI+EKMT TYKD
Sbjct: 1772 NAKNLNNKMMNEVCTQFKIHHRNSTPYRPKMNGAVEAANKNIKRILEKMTETYKD 1826

[Close]
BLAST of CsaV3_5G020320 vs. NCBI nr
Match: PKI58257.1 (hypothetical protein CRG98_021339 [Punica granatum])

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-16
Identity = 44/55 (80.00%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1   NAKNLNNKMMDELYEKFKINHRNSTPYRPKMNGAVETANKNIKRIIEKMTTTYKD 56
           NAKNLNN+++DEL E+FK++HRNSTPYRP+MNGAVE ANKNIK+IIEKMT TYKD
Sbjct: 67  NAKNLNNRIIDELCERFKVHHRNSTPYRPQMNGAVEAANKNIKKIIEKMTVTYKD 121

[Close]
BLAST of CsaV3_5G020320 vs. NCBI nr
Match: PKI79407.1 (hypothetical protein CRG98_000222 [Punica granatum])

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-16
Identity = 44/55 (80.00%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1    NAKNLNNKMMDELYEKFKINHRNSTPYRPKMNGAVETANKNIKRIIEKMTTTYKD 56
            NAKNLNN+++DEL E+FK++HRNSTPYRP+MNGAVE ANKNIK+IIEKMT TYKD
Sbjct: 1323 NAKNLNNRIIDELCERFKVHHRNSTPYRPQMNGAVEAANKNIKKIIEKMTVTYKD 1377

[Close]
BLAST of CsaV3_5G020320 vs. TrEMBL
Match: tr|A0A2I0JPN5|A0A2I0JPN5_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_021339 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.8e-17
Identity = 44/55 (80.00%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1   NAKNLNNKMMDELYEKFKINHRNSTPYRPKMNGAVETANKNIKRIIEKMTTTYKD 56
           NAKNLNN+++DEL E+FK++HRNSTPYRP+MNGAVE ANKNIK+IIEKMT TYKD
Sbjct: 67  NAKNLNNRIIDELCERFKVHHRNSTPYRPQMNGAVEAANKNIKKIIEKMTVTYKD 121

[Close]
BLAST of CsaV3_5G020320 vs. TrEMBL
Match: tr|A0A2I0LFE2|A0A2I0LFE2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000222 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.8e-17
Identity = 44/55 (80.00%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1    NAKNLNNKMMDELYEKFKINHRNSTPYRPKMNGAVETANKNIKRIIEKMTTTYKD 56
            NAKNLNN+++DEL E+FK++HRNSTPYRP+MNGAVE ANKNIK+IIEKMT TYKD
Sbjct: 1323 NAKNLNNRIIDELCERFKVHHRNSTPYRPQMNGAVEAANKNIKKIIEKMTVTYKD 1377

[Close]
BLAST of CsaV3_5G020320 vs. TrEMBL
Match: tr|A0A2I0KA48|A0A2I0KA48_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_014154 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-16
Identity = 44/55 (80.00%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 1   NAKNLNNKMMDELYEKFKINHRNSTPYRPKMNGAVETANKNIKRIIEKMTTTYKD 56
           NAKNLNNK++DEL E+FK+ HRNSTPYRP+MNG VE ANKNIK+IIEKMT TYKD
Sbjct: 96  NAKNLNNKIIDELCEQFKVQHRNSTPYRPQMNGVVEAANKNIKKIIEKMTVTYKD 150

[Close]
BLAST of CsaV3_5G020320 vs. TrEMBL
Match: tr|A0A2I0JXE9|A0A2I0JXE9_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_018678 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-16
Identity = 44/55 (80.00%), Postives = 51/55 (92.73%), Query Frame = 0 

Query: 1   NAKNLNNKMMDELYEKFKINHRNSTPYRPKMNGAVETANKNIKRIIEKMTTTYKD 56
           NAKNLNN+++DEL E+FKI+H NSTPYRP+MNGAVE ANKNIKRI+EKMT TYKD
Sbjct: 67  NAKNLNNEIIDELCERFKIHHHNSTPYRPQMNGAVEAANKNIKRIVEKMTVTYKD 121

[Close]
BLAST of CsaV3_5G020320 vs. TrEMBL
Match: tr|A0A2I0JY86|A0A2I0JY86_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_018370 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-16
Identity = 44/55 (80.00%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 1   NAKNLNNKMMDELYEKFKINHRNSTPYRPKMNGAVETANKNIKRIIEKMTTTYKD 56
           NAKNLNNK++DEL E+FK+ HRN TPYRP+MNGAVE ANKNIK+IIEKMT TYKD
Sbjct: 67  NAKNLNNKIIDELCEQFKVQHRNCTPYRPQMNGAVEAANKNIKKIIEKMTVTYKD 121

The following BLAST results are available for this feature:
BLAST of CsaV3_5G020320 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011656202.12.0e-2096.36PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein K02A2.6-like [Cucumis sa... [more]
XP_022147189.14.6e-1781.82LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia][more]
XP_022716542.17.9e-1783.64LOW QUALITY PROTEIN: uncharacterized protein LOC111275425 [Durio zibethinus][more]
PKI58257.11.0e-1680.00hypothetical protein CRG98_021339 [Punica granatum][more]
PKI79407.11.0e-1680.00hypothetical protein CRG98_000222 [Punica granatum][more]
BLAST of CsaV3_5G020320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G020320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G020320 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2I0JPN5|A0A2I0JPN5_PUNGR6.8e-1780.00Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_021339 PE=4 SV=1[more]
tr|A0A2I0LFE2|A0A2I0LFE2_PUNGR6.8e-1780.00Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000222 PE=4 SV=1[more]
tr|A0A2I0KA48|A0A2I0KA48_PUNGR1.5e-1680.00Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_014154 PE=4 SV=1[more]
tr|A0A2I0JXE9|A0A2I0JXE9_PUNGR1.5e-1680.00Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_018678 PE=4 SV=1[more]
tr|A0A2I0JY86|A0A2I0JY86_PUNGR2.0e-1680.00Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_018370 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090304 nucleic acid metabolic process
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G020320.1CsaV3_5G020320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3DG3DSA:3.30.420.10coord: 1..56
e-value: 7.3E-13
score: 50.6
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..56
score: 9.371
IPR012337Ribonuclease H-like superfamilySUPERFAMILYSSF53098Ribonuclease H-likecoord: 1..54

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G020320CSPI05G13370Wild cucumber (PI 183967)cpicucB284
CsaV3_5G020320CSPI05G13030Wild cucumber (PI 183967)cpicucB289
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G020320Silver-seed gourdcarcucB0565
CsaV3_5G020320Silver-seed gourdcarcucB0868
CsaV3_5G020320Cucumber (Gy14) v2cgybcucB232
CsaV3_5G020320Cucumber (Gy14) v1cgycucB277
CsaV3_5G020320Cucurbita maxima (Rimu)cmacucB0358
CsaV3_5G020320Cucurbita maxima (Rimu)cmacucB0868
CsaV3_5G020320Cucurbita moschata (Rifu)cmocucB0353
CsaV3_5G020320Cucurbita moschata (Rifu)cmocucB0854
CsaV3_5G020320Cucurbita pepo (Zucchini)cpecucB0215
CsaV3_5G020320Cucurbita pepo (Zucchini)cpecucB0525
CsaV3_5G020320Bottle gourd (USVL1VR-Ls)cuclsiB348
CsaV3_5G020320Melon (DHL92) v3.5.1cucmeB352
CsaV3_5G020320Watermelon (Charleston Gray)cucwcgB388
CsaV3_5G020320Melon (DHL92) v3.6.1cucmedB344
CsaV3_5G020320Watermelon (97103) v1cucwmB437
CsaV3_5G020320Watermelon (97103) v2cucwmbB354
CsaV3_5G020320Wax gourdcucwgoB452